/**
* Save changes to article.
* @return int the article ID
*/
function execute()
{
$authorSubmissionDao =& DAORegistry::getDAO('AuthorSubmissionDAO');
if (isset($this->article)) {
// Update existing article
$this->article->setLocale($this->getData('locale'));
$this->article->setCommentsToEditor($this->getData('commentsToEditor'));
if ($this->article->getSubmissionProgress() <= $this->step) {
$this->article->stampStatusModified();
$this->article->setSubmissionProgress($this->step + 1);
}
$lastSectionDecision = $this->article->getLastSectionDecision();
$lastSectionDecision->setSectionId($this->getData('sectionId'));
$authorSubmissionDao->updateAuthorSubmission($this->article);
} else {
// Insert new article
$journal =& Request::getJournal();
$user =& Request::getUser();
$this->article = new AuthorSubmission();
$this->article->setLocale($this->getData('locale'));
$this->article->setUserId($user->getId());
$this->article->setJournalId($journal->getId());
$this->article->stampStatusModified();
$this->article->setSubmissionProgress($this->step + 1);
$this->article->setLanguage(String::substr($this->article->getLocale(), 0, 2));
$this->article->setCommentsToEditor($this->getData('commentsToEditor'));
// Set new Section Decision
$sectionDecision =& new SectionDecision();
$sectionDecision->setReviewType(REVIEW_TYPE_INITIAL);
$sectionDecision->setRound(1);
$sectionDecision->setSectionId($this->getData('sectionId'));
$sectionDecision->setDecision(0);
$sectionDecision->setDateDecided(date(Core::getCurrentDate()));
$this->article->addDecision($sectionDecision);
// Set user to initial author
$author = new Author();
$author->setFirstName($user->getFirstName());
$author->setMiddleName($user->getMiddleName());
$author->setLastName($user->getLastName());
$author->setAffiliation($user->getLocalizedAffiliation());
$author->setEmail($user->getEmail());
$author->setPhoneNumber($user->getPhone());
$author->setBiography($user->getBiography(null), null);
$author->setPrimaryContact(1);
$this->article->addAuthor($author);
$authorSubmissionDao->insertAuthorSubmission($this->article);
$this->articleId = $this->article->getId();
}
return $this->articleId;
}
/**
* Retrieve all authors from published papers
* @param $schedConfId int
* @return $authors array Author Objects
*/
function getPublishedPaperAuthors($schedConfId)
{
$primaryLocale = AppLocale::getPrimaryLocale();
$locale = AppLocale::getLocale();
$authors = array();
$result =& $this->retrieve('SELECT aa.*,
aspl.setting_value AS affiliation_pl,
asl.setting_value AS affiliation_l
FROM authors aa
LEFT JOIN published_papers pa ON (pa.paper_id = aa.submission_id)
LEFT JOIN author_settings aspl ON (aspl.author_id = aa.author_id AND aspl.setting_name = ? AND aspl.locale = ?)
LEFT JOIN author_settings asl ON (asl.author_id = aa.author_id AND asl.setting_name = ? AND asl.locale = ?)
WHERE pa.sched_conf_id = ?', array('affiliation', $primaryLocale, 'affiliation', $locale, (int) $schedConfId));
while (!$result->EOF) {
$row = $result->GetRowAssoc(false);
$author = new Author();
$author->setId($row['author_id']);
$author->setSubmissionId($row['paper_id']);
$author->setFirstName($row['first_name']);
$author->setMiddleName($row['middle_name']);
$author->setLastName($row['last_name']);
$author->setAffiliation($row['affiliation_pl'], $primaryLocale);
$author->setAffiliation($row['affiliation_l'], $locale);
$author->setEmail($row['email']);
$author->setBiography($row['biography']);
$author->setPrimaryContact($row['primary_contact']);
$author->setSequence($row['seq']);
$authors[] = $author;
$result->moveNext();
}
$result->Close();
unset($result);
return $authors;
}
/**
* Save settings.
*/
function execute()
{
$articleDao = DAORegistry::getDAO('ArticleDAO');
$signoffDao = DAORegistry::getDAO('SignoffDAO');
$sectionEditorSubmissionDao = DAORegistry::getDAO('SectionEditorSubmissionDAO');
$application = PKPApplication::getApplication();
$request = $this->request;
$user = $request->getUser();
$router = $request->getRouter();
$journal = $router->getContext($request);
$article = $articleDao->newDataObject();
$article->setLocale($journal->getPrimaryLocale());
// FIXME in bug #5543
$article->setUserId($user->getId());
$article->setJournalId($journal->getId());
$article->setSectionId($this->getData('sectionId'));
$article->setLanguage($this->getData('language'));
$article->setTitle($this->getData('title'), null);
// Localized
$article->setAbstract($this->getData('abstract'), null);
// Localized
$article->setDiscipline($this->getData('discipline'), null);
// Localized
$article->setSubjectClass($this->getData('subjectClass'), null);
// Localized
$article->setSubject($this->getData('subject'), null);
// Localized
$article->setCoverageGeo($this->getData('coverageGeo'), null);
// Localized
$article->setCoverageChron($this->getData('coverageChron'), null);
// Localized
$article->setCoverageSample($this->getData('coverageSample'), null);
// Localized
$article->setType($this->getData('type'), null);
// Localized
$article->setSponsor($this->getData('sponsor'), null);
// Localized
$article->setCitations($this->getData('citations'));
$article->setPages($this->getData('pages'));
// Set some default values so the ArticleDAO doesn't complain when adding this article
$article->setDateSubmitted(Core::getCurrentDate());
$article->setStatus(STATUS_PUBLISHED);
$article->setSubmissionProgress(0);
$article->stampStatusModified();
$article->setCurrentRound(1);
$article->setFastTracked(1);
$article->setHideAuthor(0);
$article->setCommentsStatus(0);
// Insert the article to get it's ID
$articleDao->insertObject($article);
$articleId = $article->getId();
// Add authors
$authors = $this->getData('authors');
for ($i = 0, $count = count($authors); $i < $count; $i++) {
if ($authors[$i]['authorId'] > 0) {
// Update an existing author
$author =& $authorDao->getAuthor($authors[$i]['authorId'], $articleId);
$isExistingAuthor = true;
} else {
// Create a new author
$author = new Author();
$isExistingAuthor = false;
}
if ($author != null) {
$author->setSubmissionId($articleId);
$author->setFirstName($authors[$i]['firstName']);
$author->setMiddleName($authors[$i]['middleName']);
$author->setLastName($authors[$i]['lastName']);
if (array_key_exists('affiliation', $authors[$i])) {
$author->setAffiliation($authors[$i]['affiliation'], null);
}
$author->setCountry($authors[$i]['country']);
$author->setEmail($authors[$i]['email']);
$author->setUrl($authors[$i]['url']);
if (array_key_exists('competingInterests', $authors[$i])) {
$author->setCompetingInterests($authors[$i]['competingInterests'], null);
}
$author->setBiography($authors[$i]['biography'], null);
$author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0);
$author->setSequence($authors[$i]['seq']);
if ($isExistingAuthor == false) {
$authorDao = DAORegistry::getDAO('AuthorDAO');
/* @var $authorDao AuthorDAO */
$authorDao->insertObject($author);
}
}
}
// Add the submission files as galleys
import('lib.pkp.classes.file.TemporaryFileManager');
import('classes.file.ArticleFileManager');
$tempFileIds = $this->getData('tempFileId');
$temporaryFileManager = new TemporaryFileManager();
$articleFileManager = new ArticleFileManager($articleId);
$designatedPrimary = false;
foreach (array_keys($tempFileIds) as $locale) {
$temporaryFile = $temporaryFileManager->getFile($tempFileIds[$locale], $user->getId());
$fileId = null;
if ($temporaryFile) {
$fileId = $articleFileManager->temporaryFileToArticleFile($temporaryFile, SUBMISSION_FILE_SUBMISSION);
$fileType = $temporaryFile->getFileType();
if (strstr($fileType, 'html')) {
import('classes.article.ArticleHTMLGalley');
$galley = new ArticleHTMLGalley();
} else {
import('classes.article.ArticleGalley');
$galley = new ArticleGalley();
}
$galley->setArticleId($articleId);
$galley->setFileId($fileId);
$galley->setLocale($locale);
if ($galley->isHTMLGalley()) {
$galley->setLabel('HTML');
} else {
if (strstr($fileType, 'pdf')) {
$galley->setLabel('PDF');
} else {
if (strstr($fileType, 'postscript')) {
$galley->setLabel('Postscript');
} else {
if (strstr($fileType, 'xml')) {
$galley->setLabel('XML');
} else {
$galley->setLabel(__('common.untitled'));
}
}
}
}
$galleyDao = DAORegistry::getDAO('ArticleGalleyDAO');
$galleyDao->insertGalley($galley);
if (!$designatedPrimary) {
$article->setSubmissionFileId($fileId);
if ($locale == $journal->getPrimaryLocale()) {
// Used to make sure that *some* file
// is designated Review Version, but
// preferrably the primary locale.
$designatedPrimary = true;
}
}
}
// Update file search index
import('classes.search.ArticleSearchIndex');
$articleSearchIndex = new ArticleSearchIndex();
if (isset($galley)) {
$articleSearchIndex->articleFileChanged($galley->getArticleId(), SUBMISSION_SEARCH_GALLEY_FILE, $galley->getFileId());
}
$articleSearchIndex->articleChangesFinished();
}
// Designate this as the review version by default.
$authorSubmissionDao = DAORegistry::getDAO('AuthorSubmissionDAO');
$authorSubmission =& $authorSubmissionDao->getAuthorSubmission($articleId);
import('classes.submission.author.AuthorAction');
AuthorAction::designateReviewVersion($authorSubmission, true);
// Accept the submission
$sectionEditorSubmission =& $sectionEditorSubmissionDao->getSectionEditorSubmission($articleId);
$articleFileManager = new ArticleFileManager($articleId);
import('classes.submission.sectionEditor.SectionEditorAction');
assert(false);
// FIXME: $decisionLabels missing from call below.
SectionEditorAction::recordDecision($this->request, $sectionEditorSubmission, SUBMISSION_EDITOR_DECISION_ACCEPT);
import('classes.author.form.submit.AuthorSubmitForm');
AuthorSubmitForm::assignEditors($article);
$articleDao->updateObject($article);
// Add to end of editing queue
import('classes.submission.editor.EditorAction');
if (isset($galley)) {
EditorAction::expediteSubmission($article, $this->request);
}
if ($this->getData('destination') == "issue") {
// Add to an existing issue
$issueId = $this->getData('issueId');
$this->scheduleForPublication($articleId, $issueId);
}
// Import the references list.
$citationDao = DAORegistry::getDAO('CitationDAO');
$rawCitationList = $article->getCitations();
$citationDao->importCitations($request, ASSOC_TYPE_ARTICLE, $articleId, $rawCitationList);
// Index article.
import('classes.search.ArticleSearchIndex');
$articleSearchIndex = new ArticleSearchIndex();
$articleSearchIndex->articleMetadataChanged($article);
$articleSearchIndex->articleChangesFinished();
}
/**
* Save changes to article.
* @param $request Request
* @return int the article ID
*/
function execute()
{
$articleDao =& DAORegistry::getDAO('ArticleDAO');
$authorDao =& DAORegistry::getDAO('AuthorDAO');
$article =& $this->article;
// Retrieve the previous citation list for comparison.
$previousRawCitationList = $article->getCitations();
// Update article
$article->setTitle($this->getData('title'), null);
// Localized
$article->setAbstract($this->getData('abstract'), null);
// Localized
$article->setDiscipline($this->getData('discipline'), null);
// Localized
$article->setSubjectClass($this->getData('subjectClass'), null);
// Localized
$article->setSubject($this->getData('subject'), null);
// Localized
$article->setCoverageGeo($this->getData('coverageGeo'), null);
// Localized
$article->setCoverageChron($this->getData('coverageChron'), null);
// Localized
$article->setCoverageSample($this->getData('coverageSample'), null);
// Localized
$article->setType($this->getData('type'), null);
// Localized
$article->setLanguage($this->getData('language'));
$article->setSponsor($this->getData('sponsor'), null);
// Localized
$article->setCitations($this->getData('citations'));
if ($article->getSubmissionProgress() <= $this->step) {
$article->stampStatusModified();
$article->setSubmissionProgress($this->step + 1);
}
// Update authors
$authors = $this->getData('authors');
for ($i = 0, $count = count($authors); $i < $count; $i++) {
if ($authors[$i]['authorId'] > 0) {
// Update an existing author
$author =& $authorDao->getAuthor($authors[$i]['authorId'], $article->getId());
$isExistingAuthor = true;
} else {
// Create a new author
$author = new Author();
$isExistingAuthor = false;
}
if ($author != null) {
$author->setSubmissionId($article->getId());
$author->setFirstName($authors[$i]['firstName']);
$author->setMiddleName($authors[$i]['middleName']);
$author->setLastName($authors[$i]['lastName']);
$author->setAffiliation($authors[$i]['affiliation'], null);
$author->setCountry($authors[$i]['country']);
$author->setEmail($authors[$i]['email']);
$author->setData('orcid', $authors[$i]['orcid']);
$author->setUrl($authors[$i]['url']);
if (array_key_exists('competingInterests', $authors[$i])) {
$author->setCompetingInterests($authors[$i]['competingInterests'], null);
}
$author->setBiography($authors[$i]['biography'], null);
$author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0);
$author->setSequence($authors[$i]['seq']);
HookRegistry::call('Author::Form::Submit::AuthorSubmitStep3Form::Execute', array(&$author, &$authors[$i]));
if ($isExistingAuthor) {
$authorDao->updateAuthor($author);
} else {
$authorDao->insertAuthor($author);
}
}
unset($author);
}
// Remove deleted authors
$deletedAuthors = preg_split('/:/', $this->getData('deletedAuthors'), -1, PREG_SPLIT_NO_EMPTY);
for ($i = 0, $count = count($deletedAuthors); $i < $count; $i++) {
$authorDao->deleteAuthorById($deletedAuthors[$i], $article->getId());
}
parent::execute();
// Save the article
$articleDao->updateArticle($article);
// Update references list if it changed.
$citationDao =& DAORegistry::getDAO('CitationDAO');
$rawCitationList = $article->getCitations();
if ($previousRawCitationList != $rawCitationList) {
$citationDao->importCitations($this->request, ASSOC_TYPE_ARTICLE, $article->getId(), $rawCitationList);
}
return $this->articleId;
}
/**
* Save changes to article.
* @param $request PKPRequest
* @return int the article ID
*/
function execute(&$request)
{
$articleDao =& DAORegistry::getDAO('ArticleDAO');
$authorDao =& DAORegistry::getDAO('AuthorDAO');
$sectionDao =& DAORegistry::getDAO('SectionDAO');
$citationDao =& DAORegistry::getDAO('CitationDAO');
/* @var $citationDao CitationDAO */
$article =& $this->article;
// Retrieve the previous citation list for comparison.
$previousRawCitationList = $article->getCitations();
// Update article
$article->setTitle($this->getData('title'), null);
// Localized
$section =& $sectionDao->getSection($article->getSectionId());
$article->setAbstract($this->getData('abstract'), null);
// Localized
import('classes.file.PublicFileManager');
$publicFileManager = new PublicFileManager();
if ($publicFileManager->uploadedFileExists(COVER_PAGE_IMAGE_NAME)) {
$journal = Request::getJournal();
$originalFileName = $publicFileManager->getUploadedFileName(COVER_PAGE_IMAGE_NAME);
$type = $publicFileManager->getUploadedFileType(COVER_PAGE_IMAGE_NAME);
$newFileName = 'cover_article_' . $this->article->getId() . '_' . $this->getFormLocale() . $publicFileManager->getImageExtension($type);
$publicFileManager->uploadJournalFile($journal->getId(), COVER_PAGE_IMAGE_NAME, $newFileName);
$article->setOriginalFileName($publicFileManager->truncateFileName($originalFileName, 127), $this->getFormLocale());
$article->setFileName($newFileName, $this->getFormLocale());
// Store the image dimensions.
list($width, $height) = getimagesize($publicFileManager->getJournalFilesPath($journal->getId()) . '/' . $newFileName);
$article->setWidth($width, $this->getFormLocale());
$article->setHeight($height, $this->getFormLocale());
}
$article->setCoverPageAltText($this->getData('coverPageAltText'), null);
// Localized
$showCoverPage = array_map(create_function('$arrayElement', 'return (int)$arrayElement;'), (array) $this->getData('showCoverPage'));
foreach (array_keys($this->getData('coverPageAltText')) as $locale) {
if (!array_key_exists($locale, $showCoverPage)) {
$showCoverPage[$locale] = 0;
}
}
$article->setShowCoverPage($showCoverPage, null);
// Localized
$hideCoverPageToc = array_map(create_function('$arrayElement', 'return (int)$arrayElement;'), (array) $this->getData('hideCoverPageToc'));
foreach (array_keys($this->getData('coverPageAltText')) as $locale) {
if (!array_key_exists($locale, $hideCoverPageToc)) {
$hideCoverPageToc[$locale] = 0;
}
}
$article->setHideCoverPageToc($hideCoverPageToc, null);
// Localized
$hideCoverPageAbstract = array_map(create_function('$arrayElement', 'return (int)$arrayElement;'), (array) $this->getData('hideCoverPageAbstract'));
foreach (array_keys($this->getData('coverPageAltText')) as $locale) {
if (!array_key_exists($locale, $hideCoverPageAbstract)) {
$hideCoverPageAbstract[$locale] = 0;
}
}
$article->setHideCoverPageAbstract($hideCoverPageAbstract, null);
// Localized
$article->setDiscipline($this->getData('discipline'), null);
// Localized
$article->setSubjectClass($this->getData('subjectClass'), null);
// Localized
$article->setSubject($this->getData('subject'), null);
// Localized
$article->setCoverageGeo($this->getData('coverageGeo'), null);
// Localized
$article->setCoverageChron($this->getData('coverageChron'), null);
// Localized
$article->setCoverageSample($this->getData('coverageSample'), null);
// Localized
$article->setType($this->getData('type'), null);
// Localized
$article->setLanguage($this->getData('language'));
// Localized
$article->setSponsor($this->getData('sponsor'), null);
// Localized
$article->setCitations($this->getData('citations'));
if ($this->isEditor) {
$article->setHideAuthor($this->getData('hideAuthor') ? $this->getData('hideAuthor') : 0);
}
// consider the additional field names from the public identifer plugins
import('classes.plugins.PubIdPluginHelper');
$pubIdPluginHelper = new PubIdPluginHelper();
$pubIdPluginHelper->execute($this, $article);
// Update authors
$authors = $this->getData('authors');
for ($i = 0, $count = count($authors); $i < $count; $i++) {
if ($authors[$i]['authorId'] > 0) {
// Update an existing author
$author =& $authorDao->getAuthor($authors[$i]['authorId'], $article->getId());
$isExistingAuthor = true;
} else {
// Create a new author
if (checkPhpVersion('5.0.0')) {
// *5488* PHP4 Requires explicit instantiation-by-reference
$author = new Author();
} else {
$author =& new Author();
}
$isExistingAuthor = false;
}
if ($author != null) {
$author->setSubmissionId($article->getId());
$author->setFirstName($authors[$i]['firstName']);
$author->setMiddleName($authors[$i]['middleName']);
$author->setLastName($authors[$i]['lastName']);
$author->setAffiliation($authors[$i]['affiliation'], null);
// Localized
$author->setCountry($authors[$i]['country']);
$author->setEmail($authors[$i]['email']);
$author->setData('orcid', $authors[$i]['orcid']);
$author->setUrl($authors[$i]['url']);
if (array_key_exists('competingInterests', $authors[$i])) {
$author->setCompetingInterests($authors[$i]['competingInterests'], null);
// Localized
}
$author->setBiography($authors[$i]['biography'], null);
// Localized
$author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0);
$author->setSequence($authors[$i]['seq']);
HookRegistry::call('Submission::Form::MetadataForm::Execute', array(&$author, &$authors[$i]));
if ($isExistingAuthor) {
$authorDao->updateAuthor($author);
} else {
$authorDao->insertAuthor($author);
}
unset($author);
}
}
// Remove deleted authors
$deletedAuthors = preg_split('/:/', $this->getData('deletedAuthors'), -1, PREG_SPLIT_NO_EMPTY);
for ($i = 0, $count = count($deletedAuthors); $i < $count; $i++) {
$authorDao->deleteAuthorById($deletedAuthors[$i], $article->getId());
}
if ($this->isEditor) {
$article->setCopyrightHolder($this->getData('copyrightHolder'), null);
$article->setCopyrightYear($this->getData('copyrightYear'));
$article->setLicenseURL($this->getData('licenseURL'));
}
parent::execute();
// Save the article
$articleDao->updateArticle($article);
// Update search index
import('classes.search.ArticleSearchIndex');
$articleSearchIndex = new ArticleSearchIndex();
$articleSearchIndex->articleMetadataChanged($article);
$articleSearchIndex->articleChangesFinished();
// Update references list if it changed.
$rawCitationList = $article->getCitations();
if ($previousRawCitationList != $rawCitationList) {
$citationDao->importCitations($request, ASSOC_TYPE_ARTICLE, $article->getId(), $rawCitationList);
}
return $article->getId();
}
/**
* Retrieve all authors from published papers
* @param $schedConfId int
* @return $authors array Author Objects
*/
function getPublishedPaperAuthors($schedConfId)
{
$authors = array();
$result =& $this->retrieve('SELECT aa.* FROM paper_authors aa, published_papers pa WHERE aa.paper_id = pa.paper_id AND pa.sched_conf_id = ? ORDER BY pa.sched_conf_id', $schedConfId);
while (!$result->EOF) {
$row = $result->GetRowAssoc(false);
$author = new Author();
$author->setId($row['author_id']);
$author->setPaperId($row['paper_id']);
$author->setFirstName($row['first_name']);
$author->setMiddleName($row['middle_name']);
$author->setLastName($row['last_name']);
$author->setAffiliation($row['affiliation']);
$author->setEmail($row['email']);
$author->setBiography($row['biography']);
$author->setPrimaryContact($row['primary_contact']);
$author->setSequence($row['seq']);
$authors[] = $author;
$result->moveNext();
}
$result->Close();
unset($result);
return $authors;
}
/**
* Save author
* @see Form::execute()
* @see Form::execute()
*/
function execute()
{
$authorDao = DAORegistry::getDAO('AuthorDAO');
$submission = $this->getSubmission();
$author = $this->getAuthor();
if (!$author) {
// this is a new submission contributor
$author = new Author();
$author->setSubmissionId($submission->getId());
$existingAuthor = false;
} else {
$existingAuthor = true;
if ($submission->getId() !== $author->getSubmissionId()) {
fatalError('Invalid author!');
}
}
$author->setFirstName($this->getData('firstName'));
$author->setMiddleName($this->getData('middleName'));
$author->setLastName($this->getData('lastName'));
$author->setSuffix($this->getData('suffix'));
$author->setAffiliation($this->getData('affiliation'), null);
// localized
$author->setCountry($this->getData('country'));
$author->setEmail($this->getData('email'));
$author->setUrl($this->getData('userUrl'));
$author->setOrcid($this->getData('orcid'));
$author->setUserGroupId($this->getData('userGroupId'));
$author->setBiography($this->getData('biography'), null);
// localized
$author->setPrimaryContact($this->getData('primaryContact') ? true : false);
$author->setIncludeInBrowse($this->getData('includeInBrowse') ? true : false);
// in order to be able to use the hook
parent::execute();
if ($existingAuthor) {
$authorDao->updateObject($author);
$authorId = $author->getId();
} else {
$authorId = $authorDao->insertObject($author);
}
return $authorId;
}
/**
* Save changes to article.
* @return int the article ID
*/
function execute()
{
$articleDao =& DAORegistry::getDAO('ArticleDAO');
$authorDao =& DAORegistry::getDAO('AuthorDAO');
$sectionDao =& DAORegistry::getDAO('SectionDAO');
// Update article
$article =& $this->article;
$article->setTitle($this->getData('title'), null);
// Localized
$section =& $sectionDao->getSection($article->getSectionId());
$article->setAbstract($this->getData('abstract'), null);
// Localized
import('file.PublicFileManager');
$publicFileManager = new PublicFileManager();
if ($publicFileManager->uploadedFileExists('coverPage')) {
$journal = Request::getJournal();
$originalFileName = $publicFileManager->getUploadedFileName('coverPage');
$newFileName = 'cover_article_' . $this->getData('articleId') . '_' . $this->getFormLocale() . '.' . $publicFileManager->getExtension($originalFileName);
$publicFileManager->uploadJournalFile($journal->getId(), 'coverPage', $newFileName);
$article->setOriginalFileName($publicFileManager->truncateFileName($originalFileName, 127), $this->getFormLocale());
$article->setFileName($newFileName, $this->getFormLocale());
// Store the image dimensions.
list($width, $height) = getimagesize($publicFileManager->getJournalFilesPath($journal->getId()) . '/' . $newFileName);
$article->setWidth($width, $this->getFormLocale());
$article->setHeight($height, $this->getFormLocale());
}
$article->setCoverPageAltText($this->getData('coverPageAltText'), null);
// Localized
$showCoverPage = array_map(create_function('$arrayElement', 'return (int)$arrayElement;'), (array) $this->getData('showCoverPage'));
foreach (array_keys($this->getData('coverPageAltText')) as $locale) {
if (!array_key_exists($locale, $showCoverPage)) {
$showCoverPage[$locale] = 0;
}
}
$article->setShowCoverPage($showCoverPage, null);
// Localized
$hideCoverPageToc = array_map(create_function('$arrayElement', 'return (int)$arrayElement;'), (array) $this->getData('hideCoverPageToc'));
foreach (array_keys($this->getData('coverPageAltText')) as $locale) {
if (!array_key_exists($locale, $hideCoverPageToc)) {
$hideCoverPageToc[$locale] = 0;
}
}
$article->setHideCoverPageToc($hideCoverPageToc, null);
// Localized
$hideCoverPageAbstract = array_map(create_function('$arrayElement', 'return (int)$arrayElement;'), (array) $this->getData('hideCoverPageAbstract'));
foreach (array_keys($this->getData('coverPageAltText')) as $locale) {
if (!array_key_exists($locale, $hideCoverPageAbstract)) {
$hideCoverPageAbstract[$locale] = 0;
}
}
$article->setHideCoverPageAbstract($hideCoverPageAbstract, null);
// Localized
$article->setDiscipline($this->getData('discipline'), null);
// Localized
$article->setSubjectClass($this->getData('subjectClass'), null);
// Localized
$article->setSubject($this->getData('subject'), null);
// Localized
$article->setCoverageGeo($this->getData('coverageGeo'), null);
// Localized
$article->setCoverageChron($this->getData('coverageChron'), null);
// Localized
$article->setCoverageSample($this->getData('coverageSample'), null);
// Localized
$article->setType($this->getData('type'), null);
// Localized
$article->setLanguage($this->getData('language'));
// Localized
$article->setSponsor($this->getData('sponsor'), null);
// Localized
$article->setCitations($this->getData('citations'));
if ($this->isEditor) {
$article->setHideAuthor($this->getData('hideAuthor') ? $this->getData('hideAuthor') : 0);
}
// Update authors
$authors = $this->getData('authors');
for ($i = 0, $count = count($authors); $i < $count; $i++) {
if ($authors[$i]['authorId'] > 0) {
// Update an existing author
$author =& $article->getAuthor($authors[$i]['authorId']);
$isExistingAuthor = true;
} else {
// Create a new author
$author = new Author();
$isExistingAuthor = false;
}
if ($author != null) {
$author->setFirstName($authors[$i]['firstName']);
$author->setMiddleName($authors[$i]['middleName']);
$author->setLastName($authors[$i]['lastName']);
$author->setAffiliation($authors[$i]['affiliation']);
$author->setCountry($authors[$i]['country']);
$author->setEmail($authors[$i]['email']);
$author->setUrl($authors[$i]['url']);
if (array_key_exists('competingInterests', $authors[$i])) {
$author->setCompetingInterests($authors[$i]['competingInterests'], null);
// Localized
}
$author->setBiography($authors[$i]['biography'], null);
// Localized
$author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0);
$author->setSequence($authors[$i]['seq']);
if ($isExistingAuthor == false) {
$article->addAuthor($author);
}
}
}
// Remove deleted authors
$deletedAuthors = explode(':', $this->getData('deletedAuthors'));
for ($i = 0, $count = count($deletedAuthors); $i < $count; $i++) {
$article->removeAuthor($deletedAuthors[$i]);
}
parent::execute();
// Save the article
$articleDao->updateArticle($article);
// Update search index
import('search.ArticleSearchIndex');
ArticleSearchIndex::indexArticleMetadata($article);
return $article->getId();
}
public function testSpeed()
{
// Add publisher records
// ---------------------
$scholastic = new Publisher();
$scholastic->setName("Scholastic");
// do not save, will do later to test cascade
$morrow = new Publisher();
$morrow->setName("William Morrow");
$morrow->save();
$morrow_id = $morrow->getId();
$penguin = new Publisher();
$penguin->setName("Penguin");
$penguin->save();
$penguin_id = $penguin->getId();
$vintage = new Publisher();
$vintage->setName("Vintage");
$vintage->save();
$vintage_id = $vintage->getId();
// Add author records
// ------------------
$rowling = new Author();
$rowling->setFirstName("J.K.");
$rowling->setLastName("Rowling");
// no save()
$stephenson = new Author();
$stephenson->setFirstName("Neal");
$stephenson->setLastName("Stephenson");
$stephenson->save();
$stephenson_id = $stephenson->getId();
$byron = new Author();
$byron->setFirstName("George");
$byron->setLastName("Byron");
$byron->save();
$byron_id = $byron->getId();
$grass = new Author();
$grass->setFirstName("Gunter");
$grass->setLastName("Grass");
$grass->save();
$grass_id = $grass->getId();
// Add book records
// ----------------
$phoenix = new Book();
$phoenix->setTitle("Harry Potter and the Order of the Phoenix");
$phoenix->setISBN("043935806X");
// cascading save (Harry Potter)
$phoenix->setAuthor($rowling);
$phoenix->setPublisher($scholastic);
$phoenix->save();
$phoenix_id = $phoenix->getId();
$qs = new Book();
$qs->setISBN("0380977427");
$qs->setTitle("Quicksilver");
$qs->setAuthor($stephenson);
$qs->setPublisher($morrow);
$qs->save();
$qs_id = $qs->getId();
$dj = new Book();
$dj->setISBN("0140422161");
$dj->setTitle("Don Juan");
$dj->setAuthor($byron);
$dj->setPublisher($penguin);
$dj->save();
$dj_id = $qs->getId();
$td = new Book();
$td->setISBN("067972575X");
$td->setTitle("The Tin Drum");
$td->setAuthor($grass);
$td->setPublisher($vintage);
$td->save();
$td_id = $td->getId();
// Add review records
// ------------------
$r1 = new Review();
$r1->setBook($phoenix);
$r1->setReviewedBy("Washington Post");
$r1->setRecommended(true);
$r1->setReviewDate(time());
$r1->save();
$r1_id = $r1->getId();
$r2 = new Review();
$r2->setBook($phoenix);
$r2->setReviewedBy("New York Times");
$r2->setRecommended(false);
$r2->setReviewDate(time());
$r2->save();
$r2_id = $r2->getId();
// Perform a "complex" search
// --------------------------
$crit = new Criteria();
$crit->add(BookPeer::TITLE, 'Harry%', Criteria::LIKE);
$results = BookPeer::doSelect($crit);
$crit2 = new Criteria();
$crit2->add(BookPeer::ISBN, array("0380977427", "0140422161"), Criteria::IN);
$results = BookPeer::doSelect($crit2);
// Perform a "limit" search
// ------------------------
$crit = new Criteria();
$crit->setLimit(2);
$crit->setOffset(1);
$crit->addAscendingOrderByColumn(BookPeer::TITLE);
$results = BookPeer::doSelect($crit);
// Perform a lookup & update!
// --------------------------
$qs_lookup = BookPeer::retrieveByPk($qs_id);
$new_title = "Quicksilver (" . crc32(uniqid(rand())) . ")";
$qs_lookup->setTitle($new_title);
$qs_lookup->save();
$qs_lookup2 = BookPeer::retrieveByPk($qs_id);
// Test some basic DATE / TIME stuff
// ---------------------------------
// that's the control timestamp.
$control = strtotime('2004-02-29 00:00:00');
// should be two in the db
$r = ReviewPeer::doSelectOne(new Criteria());
$r_id = $r->getId();
$r->setReviewDate($control);
$r->save();
$r2 = ReviewPeer::retrieveByPk($r_id);
// Testing the DATE/TIME columns
// -----------------------------
// that's the control timestamp.
$control = strtotime('2004-02-29 00:00:00');
// should be two in the db
$r = ReviewPeer::doSelectOne(new Criteria());
$r_id = $r->getId();
$r->setReviewDate($control);
$r->save();
$r2 = ReviewPeer::retrieveByPk($r_id);
// Testing the column validators
// -----------------------------
$bk1 = new Book();
$bk1->setTitle("12345");
// min length is 10
$ret = $bk1->validate();
// Unique validator
$bk2 = new Book();
$bk2->setTitle("Don Juan");
$ret = $bk2->validate();
// Now trying some more complex validation.
$auth1 = new Author();
$auth1->setFirstName("Hans");
// last name required; will fail
$bk1->setAuthor($auth1);
$rev1 = new Review();
$rev1->setReviewDate("08/09/2001");
// will fail: reviewed_by column required
$bk1->addReview($rev1);
$ret2 = $bk1->validate();
$bk2 = new Book();
$bk2->setTitle("12345678901");
// passes
$auth2 = new Author();
$auth2->setLastName("Blah");
//passes
$auth2->setEmail("*****@*****.**");
//passes
$auth2->setAge(50);
//passes
$bk2->setAuthor($auth2);
$rev2 = new Review();
$rev2->setReviewedBy("Me!");
// passes
$rev2->setStatus("new");
// passes
$bk2->addReview($rev2);
$ret3 = $bk2->validate();
// Testing doCount() functionality
// -------------------------------
$c = new Criteria();
$count = BookPeer::doCount($c);
// Testing many-to-many relationships
// ----------------------------------
// init book club list 1 with 2 books
$blc1 = new BookClubList();
$blc1->setGroupLeader("Crazyleggs");
$blc1->setTheme("Happiness");
$brel1 = new BookListRel();
$brel1->setBook($phoenix);
$brel2 = new BookListRel();
$brel2->setBook($dj);
$blc1->addBookListRel($brel1);
$blc1->addBookListRel($brel2);
$blc1->save();
// init book club list 2 with 1 book
$blc2 = new BookClubList();
$blc2->setGroupLeader("John Foo");
$blc2->setTheme("Default");
$brel3 = new BookListRel();
$brel3->setBook($phoenix);
$blc2->addBookListRel($brel3);
$blc2->save();
// re-fetch books and lists from db to be sure that nothing is cached
$crit = new Criteria();
$crit->add(BookPeer::ID, $phoenix->getId());
$phoenix = BookPeer::doSelectOne($crit);
$crit = new Criteria();
$crit->add(BookClubListPeer::ID, $blc1->getId());
$blc1 = BookClubListPeer::doSelectOne($crit);
$crit = new Criteria();
$crit->add(BookClubListPeer::ID, $blc2->getId());
$blc2 = BookClubListPeer::doSelectOne($crit);
$relCount = $phoenix->countBookListRels();
$relCount = $blc1->countBookListRels();
$relCount = $blc2->countBookListRels();
// Removing books that were just created
// -------------------------------------
$hp = BookPeer::retrieveByPk($phoenix_id);
$c = new Criteria();
$c->add(BookPeer::ID, $hp->getId());
// The only way for cascading to work currently
// is to specify the author_id and publisher_id (i.e. the fkeys
// have to be in the criteria).
$c->add(AuthorPeer::ID, $hp->getId());
$c->add(PublisherPeer::ID, $hp->getId());
$c->setSingleRecord(true);
BookPeer::doDelete($c);
// Attempting to delete books by complex criteria
$c = new Criteria();
$cn = $c->getNewCriterion(BookPeer::ISBN, "043935806X");
$cn->addOr($c->getNewCriterion(BookPeer::ISBN, "0380977427"));
$cn->addOr($c->getNewCriterion(BookPeer::ISBN, "0140422161"));
$c->add($cn);
BookPeer::doDelete($c);
$td->delete();
AuthorPeer::doDelete($stephenson_id);
AuthorPeer::doDelete($byron_id);
$grass->delete();
PublisherPeer::doDelete($morrow_id);
PublisherPeer::doDelete($penguin_id);
$vintage->delete();
// These have to be deleted manually also since we have onDelete
// set to SETNULL in the foreign keys in book. Is this correct?
$rowling->delete();
$scholastic->delete();
$blc1->delete();
$blc2->delete();
}
/**
* Retrieve all authors from published articles
* @param $issueId int
* @return $authors array Author Objects
*/
function getPublishedArticleAuthors($issueId)
{
$primaryLocale = Locale::getPrimaryLocale();
$locale = Locale::getLocale();
$authors = array();
$result =& $this->retrieve('SELECT aa.*
FROM authors aa
LEFT JOIN published_articles pa ON (pa.article_id = aa.submission_id)
WHERE pa.issue_id = ? ORDER BY pa.issue_id', (int) $issueId);
while (!$result->EOF) {
$row = $result->GetRowAssoc(false);
$author = new Author();
$author->setId($row['author_id']);
$author->setSubmissionId($row['article_id']);
$author->setFirstName($row['first_name']);
$author->setMiddleName($row['middle_name']);
$author->setLastName($row['last_name']);
$author->setAffiliation($row['affiliation_pl'], $primaryLocale);
$author->setAffiliation($row['affiliation_l'], $locale);
$author->setEmail($row['email']);
$author->setBiography($row['biography']);
$author->setPrimaryContact($row['primary_contact']);
$author->setSequence($row['seq']);
$authors[] = $author;
$result->moveNext();
}
$result->Close();
unset($result);
return $authors;
}
/**
* Internal function to return an Author object from a row.
* @param $row array
* @return Author
*/
function &_returnAuthorFromRow(&$row)
{
$author = new Author();
$author->setId($row['author_id']);
$author->setPaperId($row['paper_id']);
$author->setFirstName($row['first_name']);
$author->setMiddleName($row['middle_name']);
$author->setLastName($row['last_name']);
$author->setAffiliation($row['affiliation']);
$author->setCountry($row['country']);
$author->setEmail($row['email']);
$author->setUrl($row['url']);
$author->setPrimaryContact($row['primary_contact']);
$author->setSequence($row['seq']);
$this->getDataObjectSettings('paper_author_settings', 'author_id', $row['author_id'], $author);
HookRegistry::call('AuthorDAO::_returnAuthorFromRow', array(&$author, &$row));
return $author;
}
/**
* Save changes to article.
* @return int the article ID
*/
function execute()
{
$articleDao =& DAORegistry::getDAO('ArticleDAO');
$authorDao =& DAORegistry::getDAO('AuthorDAO');
// Update article
$article =& $this->article;
$article->setTitle($this->getData('title'), null);
// Localized
$article->setAbstract($this->getData('abstract'), null);
// Localized
$article->setDiscipline($this->getData('discipline'), null);
// Localized
$article->setSubjectClass($this->getData('subjectClass'), null);
// Localized
$article->setSubject($this->getData('subject'), null);
// Localized
$article->setCoverageGeo($this->getData('coverageGeo'), null);
// Localized
$article->setCoverageChron($this->getData('coverageChron'), null);
// Localized
$article->setCoverageSample($this->getData('coverageSample'), null);
// Localized
$article->setType($this->getData('type'), null);
// Localized
$article->setLanguage($this->getData('language'));
$article->setSponsor($this->getData('sponsor'), null);
// Localized
$article->setCitations($this->getData('citations'));
if ($article->getSubmissionProgress() <= $this->step) {
$article->stampStatusModified();
$article->setSubmissionProgress($this->step + 1);
}
// Update authors
$authors = $this->getData('authors');
for ($i = 0, $count = count($authors); $i < $count; $i++) {
if ($authors[$i]['authorId'] > 0) {
// Update an existing author
$author =& $article->getAuthor($authors[$i]['authorId']);
$isExistingAuthor = true;
} else {
// Create a new author
$author = new Author();
$isExistingAuthor = false;
}
if ($author != null) {
$author->setArticleId($article->getId());
$author->setFirstName($authors[$i]['firstName']);
$author->setMiddleName($authors[$i]['middleName']);
$author->setLastName($authors[$i]['lastName']);
$author->setAffiliation($authors[$i]['affiliation']);
$author->setCountry($authors[$i]['country']);
$author->setEmail($authors[$i]['email']);
$author->setUrl($authors[$i]['url']);
if (array_key_exists('competingInterests', $authors[$i])) {
$author->setCompetingInterests($authors[$i]['competingInterests'], null);
}
$author->setBiography($authors[$i]['biography'], null);
$author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0);
$author->setSequence($authors[$i]['seq']);
if ($isExistingAuthor == false) {
$article->addAuthor($author);
}
}
unset($author);
}
// Remove deleted authors
$deletedAuthors = explode(':', $this->getData('deletedAuthors'));
for ($i = 0, $count = count($deletedAuthors); $i < $count; $i++) {
$article->removeAuthor($deletedAuthors[$i]);
}
parent::execute();
// Save the article
$articleDao->updateArticle($article);
return $this->articleId;
}
/**
* Save settings.
*/
function execute($editArticleId)
{
$this->editArticleID = $editArticleId;
$articleDao =& DAORegistry::getDAO('ArticleDAO');
$signoffDao =& DAORegistry::getDAO('SignoffDAO');
$sectionEditorSubmissionDao =& DAORegistry::getDAO('SectionEditorSubmissionDAO');
$application =& PKPApplication::getApplication();
$request =& $application->getRequest();
$user =& $request->getUser();
$router =& $request->getRouter();
$journal =& $router->getContext($request);
$article = new Article();
$article->setLocale($journal->getPrimaryLocale());
// FIXME in bug #5543
$article->setUserId($user->getId());
$article->setJournalId($journal->getId());
$article->setSectionId($this->getData('sectionId'));
$article->setLanguage(String::substr($journal->getPrimaryLocale(), 0, 2));
$article->setTitle($this->getData('title'), null);
// Localized
//add Original Journal to Abstract
$orig_journal = $this->getData('originalJournal');
$abstr = $this->getData('abstract');
foreach (array_keys($abstr) as $abs_key) {
$abstr[$abs_key] .= ' <p id="originalPub"> ' . $orig_journal . ' </p> ';
// $abstr[$abs_key] .= ' <p id="originalPub"> ' . $orig_journal[$abs_key]. ' </p> ';
//OriginalJournal in EditPlugin only a string and not an array...
$this->setData('abstract', $abstr);
}
$article->setAbstract($this->getData('abstract'), null);
// Localized
$article->setDiscipline($this->getData('discipline'), null);
// Localized
$article->setSubjectClass($this->getData('subjectClass'), null);
// Localized
$article->setSubject($this->getData('subject'), null);
// Localized
$article->setCoverageGeo($this->getData('coverageGeo'), null);
// Localized
$article->setCoverageChron($this->getData('coverageChron'), null);
// Localized
$article->setCoverageSample($this->getData('coverageSample'), null);
// Localized
$article->setType($this->getData('type'), null);
// Localized
$article->setSponsor($this->getData('sponsor'), null);
// Localized
$article->setCitations($this->getData('citations'));
$article->setPages($this->getData('pages'));
// Set some default values so the ArticleDAO doesn't complain when adding this article
$article->setDateSubmitted(Core::getCurrentDate());
$article->setStatus(STATUS_PUBLISHED);
$article->setSubmissionProgress(0);
$article->stampStatusModified();
$article->setCurrentRound(1);
$article->setFastTracked(1);
$article->setHideAuthor(0);
$article->setCommentsStatus(0);
// As article has an ID already set it
$article->setId($this->editArticleID);
$articleId = $this->editArticleID;
//delete prior Authors to prevent from double saving the same authors
$authorDao =& DAORegistry::getDAO('AuthorDAO');
$authorDao->deleteAuthorsByArticle($articleId);
// Add authors
$authors = $this->getData('authors');
for ($i = 0, $count = count($authors); $i < $count; $i++) {
if ($authors[$i]['authorId'] > 0) {
// Update an existing author
$author =& $article->getAuthor($authors[$i]['authorId']);
$isExistingAuthor = true;
} else {
// Create a new author
$author = new Author();
$isExistingAuthor = false;
}
if ($author != null) {
$author->setSubmissionId($articleId);
$author->setFirstName($authors[$i]['firstName']);
$author->setMiddleName($authors[$i]['middleName']);
$author->setLastName($authors[$i]['lastName']);
if (array_key_exists('affiliation', $authors[$i])) {
$author->setAffiliation($authors[$i]['affiliation'], null);
}
$author->setCountry($authors[$i]['country']);
$author->setEmail($authors[$i]['email']);
$author->setUrl($authors[$i]['url']);
if (array_key_exists('competingInterests', $authors[$i])) {
$author->setCompetingInterests($authors[$i]['competingInterests'], null);
}
$author->setBiography($authors[$i]['biography'], null);
$author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0);
$author->setSequence($authors[$i]['seq']);
if ($isExistingAuthor == false) {
$article->addAuthor($author);
}
}
}
// Check whether the user gave a handle and create a handleSubmissionFile in case
$submissionHandle = $this->getData('submissionHandle');
$handleSubmissionFileId;
$handleCheck = FALSE;
//import FileManager before creating files because otherwise naming of the copied files failes
import('classes.file.ArticleFileManager');
foreach (array_keys($submissionHandle) as $locale) {
if (!empty($submissionHandle[$locale])) {
$this->deleteOldFile("submission/original", $articleId);
// $this->deleteOldFile("submission/copyedit", $articleId);
$handleCheck = TRUE;
$handleSubmissionId = $this->createHandleTXTFile($submissionHandle[$locale], $articleId, 'submission');
$handleSubmissionPDFId = $this->createHandlePDF($submissionHandle[$locale], $articleId, 'submission');
//Add the handle submission files as galley
$this->setGalley($articleId, $handleSubmissionPDFId, $locale, 'application/pdf');
}
if ($handleCheck == TRUE) {
if ($locale == $journal->getPrimaryLocale()) {
$article->setSubmissionFileId($handleSubmissionPDFId);
$article->SetReviewFileId($handleSubmissionPDFId);
}
// Update file search index
import('classes.search.ArticleSearchIndex');
if (isset($galley)) {
ArticleSearchIndex::updateFileIndex($galley->getArticleId(), ARTICLE_SEARCH_GALLEY_FILE, $galley->getFileId());
}
}
}
// Add the submission files as galleys
import('classes.file.TemporaryFileManager');
import('classes.file.ArticleFileManager');
$tempFileIds = $this->getData('tempFileId');
$temporaryFileManager = new TemporaryFileManager();
$articleFileManager = new ArticleFileManager($articleId);
$tempFileCheck = FALSE;
foreach (array_keys($tempFileIds) as $locale) {
$temporaryFile = $temporaryFileManager->getFile($tempFileIds[$locale], $user->getId());
$fileId = null;
if ($temporaryFile) {
$this->deleteOldFile("submission/original", $articleId);
$this->deleteOldFile("submission/copyedit", $articleId);
$tempFileCheck = TRUE;
$fileId = $articleFileManager->temporaryFileToArticleFile($temporaryFile, ARTICLE_FILE_SUBMISSION);
$fileType = $temporaryFile->getFileType();
$this->setGalley($articleId, $fileId, $locale, $fileType);
// $galley =& $this->setGalley($articleId, $fileId, $locale, $fileType);
}
if ($tempFileCheck == TRUE) {
if ($locale == $journal->getPrimaryLocale()) {
$article->setSubmissionFileId($fileId);
$article->SetReviewFileId($fileId);
}
// Update file search index
import('classes.search.ArticleSearchIndex');
if (isset($galley)) {
ArticleSearchIndex::updateFileIndex($galley->getArticleId(), ARTICLE_SEARCH_GALLEY_FILE, $galley->getFileId());
}
}
}
//Check whether the user gave a handle and create handleSupplFile in case
$supplHandle = $this->getData('supplHandle');
$handleSuppFileId = null;
foreach (array_keys($supplHandle) as $locale) {
if (!empty($supplHandle[$locale])) {
$this->deleteOldFile("supp", $articleId);
$handleSuppFileId = $this->createHandleTXTFile($supplHandle[$locale], $articleId, 'supplementary');
$handleSupplPDFFileID = $this->createHandlePDF($submissionHandle[$locale], $articleId, 'supplementary');
}
}
//Add uploaded Supplementary file
$tempSupplFileIds = $this->getData('tempSupplFileId');
foreach (array_keys($tempSupplFileIds) as $locale) {
$temporaryFile = $temporaryFileManager->getFile($tempSupplFileIds[$locale], $user->getId());
$fileId = null;
if ($temporaryFile) {
$this->deleteOldFile("supp", $articleId);
$fileId = $articleFileManager->temporaryFileToArticleFile($temporaryFile, ARTICLE_FILE_SUPP);
$fileType = $temporaryFile->getFileType();
}
}
// Designate this as the review version by default.
/*$authorSubmissionDao =& DAORegistry::getDAO('AuthorSubmissionDAO');
$authorSubmission =& $authorSubmissionDao->getAuthorSubmission($articleId);
import('classes.submission.author.AuthorAction');
AuthorAction::designateReviewVersion($authorSubmission, true);
*/
// Accept the submission
/*$sectionEditorSubmission =& $sectionEditorSubmissionDao->getSectionEditorSubmission($articleId);
$articleFileManager = new ArticleFileManager($articleId);
$sectionEditorSubmission->setReviewFile($articleFileManager->getFile($article->getSubmissionFileId()));
import('classes.submission.sectionEditor.SectionEditorAction');
SectionEditorAction::recordDecision($sectionEditorSubmission, SUBMISSION_EDITOR_DECISION_ACCEPT);
*/
// Create signoff infrastructure
$copyeditInitialSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_INITIAL', ASSOC_TYPE_ARTICLE, $articleId);
$copyeditAuthorSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_AUTHOR', ASSOC_TYPE_ARTICLE, $articleId);
$copyeditFinalSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_FINAL', ASSOC_TYPE_ARTICLE, $articleId);
$copyeditInitialSignoff->setUserId(0);
$copyeditAuthorSignoff->setUserId($user->getId());
$copyeditFinalSignoff->setUserId(0);
$signoffDao->updateObject($copyeditInitialSignoff);
$signoffDao->updateObject($copyeditAuthorSignoff);
$signoffDao->updateObject($copyeditFinalSignoff);
$layoutSignoff = $signoffDao->build('SIGNOFF_LAYOUT', ASSOC_TYPE_ARTICLE, $articleId);
$layoutSignoff->setUserId(0);
$signoffDao->updateObject($layoutSignoff);
$proofAuthorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_AUTHOR', ASSOC_TYPE_ARTICLE, $articleId);
$proofProofreaderSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_PROOFREADER', ASSOC_TYPE_ARTICLE, $articleId);
$proofLayoutEditorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_LAYOUT', ASSOC_TYPE_ARTICLE, $articleId);
$proofAuthorSignoff->setUserId($user->getId());
$proofProofreaderSignoff->setUserId(0);
$proofLayoutEditorSignoff->setUserId(0);
$signoffDao->updateObject($proofAuthorSignoff);
$signoffDao->updateObject($proofProofreaderSignoff);
$signoffDao->updateObject($proofLayoutEditorSignoff);
import('classes.author.form.submit.AuthorSubmitForm');
AuthorSubmitForm::assignEditors($article);
$articleDao->updateArticle($article);
// Add to end of editing queue
import('classes.submission.editor.EditorAction');
if (isset($galley)) {
EditorAction::expediteSubmission($article);
}
// As the article already has an issue, just get it from database
$issueDao =& DAORegistry::getDAO('IssueDAO');
$issue =& $issueDao->getIssueByArticleId($this->editArticleID);
$issueId = $issue->getIssueId();
//$this->scheduleForPublication($articleId, $issueId);
// Index article.
import('classes.search.ArticleSearchIndex');
ArticleSearchIndex::indexArticleMetadata($article);
// Import the references list.
$citationDao =& DAORegistry::getDAO('CitationDAO');
$rawCitationList = $article->getCitations();
$citationDao->importCitations($request, ASSOC_TYPE_ARTICLE, $articleId, $rawCitationList);
}
/**
* Save submissionContributor
* @see Form::execute()
* @see Form::execute()
*/
function execute()
{
$authorDao =& DAORegistry::getDAO('AuthorDAO');
$monograph = $this->getMonograph();
$submissionContributor =& $this->getSubmissionContributor();
if (!$submissionContributor) {
// this is a new submission contributor
$submissionContributor = new Author();
$submissionContributor->setMonographId($monograph->getId());
$existingSubmissionContributor = false;
} else {
$existingSubmissionContributor = true;
}
assert($monograph->getId() == $submissionContributor->getMonographId());
$submissionContributor->setFirstName($this->getData('firstName'));
$submissionContributor->setMiddleName($this->getData('middleName'));
$submissionContributor->setLastName($this->getData('lastName'));
$submissionContributor->setAffiliation($this->getData('affiliation'), Locale::getLocale());
// localized
$submissionContributor->setCountry($this->getData('country'));
$submissionContributor->setEmail($this->getData('email'));
$submissionContributor->setUrl($this->getData('url'));
$submissionContributor->setUserGroupId($this->getData('userGroupId'));
$submissionContributor->setBiography($this->getData('biography'), Locale::getLocale());
// localized
$submissionContributor->setPrimaryContact($this->getData('primaryContact') ? true : false);
if ($existingSubmissionContributor) {
$authorDao->updateAuthor($submissionContributor);
$authorId = $submissionContributor->getId();
} else {
$authorId = $authorDao->insertAuthor($submissionContributor);
}
return $authorId;
}
/**
* @covers OAIMetadataFormat_DC
* @covers Dc11SchemaArticleAdapter
*/
public function testToXml()
{
$this->markTestSkipped('Skipped because of weird class interaction with ControlledVocabDAO.');
//
// Create test data.
//
$journalId = 1;
// Enable the DOI plugin.
$pluginSettingsDao = DAORegistry::getDAO('PluginSettingsDAO');
/* @var $pluginSettingsDao PluginSettingsDAO */
$pluginSettingsDao->updateSetting($journalId, 'doipubidplugin', 'enabled', 1);
$pluginSettingsDao->updateSetting($journalId, 'doipubidplugin', 'enableIssueDoi', 1);
$pluginSettingsDao->updateSetting($journalId, 'doipubidplugin', 'enableArticleDoi', 1);
$pluginSettingsDao->updateSetting($journalId, 'doipubidplugin', 'enableGalleyDoi', 1);
// Author
import('classes.article.Author');
$author = new Author();
$author->setFirstName('author-firstname');
$author->setLastName('author-lastname');
$author->setAffiliation('author-affiliation', 'en_US');
$author->setEmail('*****@*****.**');
// Article
import('classes.article.PublishedArticle');
$article = $this->getMock('PublishedArticle', array('getBestArticleId'));
/* @var $article PublishedArticle */
$article->expects($this->any())->method('getBestArticleId')->will($this->returnValue(9));
$article->setId(9);
$article->setJournalId($journalId);
$author->setSubmissionId($article->getId());
$article->setPages(15);
$article->setType('art-type', 'en_US');
$article->setTitle('article-title-en', 'en_US');
$article->setTitle('article-title-de', 'de_DE');
$article->setDiscipline('article-discipline', 'en_US');
$article->setSubject('article-subject', 'en_US');
$article->setAbstract('article-abstract', 'en_US');
$article->setSponsor('article-sponsor', 'en_US');
$article->setStoredPubId('doi', 'article-doi');
$article->setLanguage('en_US');
// Galleys
import('classes.article.ArticleGalley');
$galley = new ArticleGalley();
$galley->setId(98);
$galley->setStoredPubId('doi', 'galley-doi');
$galleys = array($galley);
// Journal
import('classes.journal.Journal');
$journal = $this->getMock('Journal', array('getSetting'));
/* @var $journal Journal */
$journal->expects($this->any())->method('getSetting')->will($this->returnCallback(array($this, 'getJournalSetting')));
$journal->setPrimaryLocale('en_US');
$journal->setPath('journal-path');
$journal->setId($journalId);
// Section
import('classes.journal.Section');
$section = new Section();
$section->setIdentifyType('section-identify-type', 'en_US');
// Issue
import('classes.issue.Issue');
$issue = $this->getMock('Issue', array('getIssueIdentification'));
/* @var $issue Issue */
$issue->expects($this->any())->method('getIssueIdentification')->will($this->returnValue('issue-identification'));
$issue->setId(96);
$issue->setDatePublished('2010-11-05');
$issue->setStoredPubId('doi', 'issue-doi');
$issue->setJournalId($journalId);
//
// Create infrastructural support objects
//
// Router
import('lib.pkp.classes.core.PKPRouter');
$router = $this->getMock('PKPRouter', array('url'));
$application = PKPApplication::getApplication();
$router->setApplication($application);
$router->expects($this->any())->method('url')->will($this->returnCallback(array($this, 'routerUrl')));
// Request
import('classes.core.Request');
$request = $this->getMock('Request', array('getRouter'));
$request->expects($this->any())->method('getRouter')->will($this->returnValue($router));
Registry::set('request', $request);
//
// Create mock DAOs
//
// Create a mocked AuthorDAO that returns our test author.
import('classes.article.AuthorDAO');
$authorDao = $this->getMock('AuthorDAO', array('getBySubmissionId'));
$authorDao->expects($this->any())->method('getBySubmissionId')->will($this->returnValue(array($author)));
DAORegistry::registerDAO('AuthorDAO', $authorDao);
// Create a mocked OAIDAO that returns our test data.
import('classes.oai.ojs.OAIDAO');
$oaiDao = $this->getMock('OAIDAO', array('getJournal', 'getSection', 'getIssue'));
$oaiDao->expects($this->any())->method('getJournal')->will($this->returnValue($journal));
$oaiDao->expects($this->any())->method('getSection')->will($this->returnValue($section));
$oaiDao->expects($this->any())->method('getIssue')->will($this->returnValue($issue));
DAORegistry::registerDAO('OAIDAO', $oaiDao);
// Create a mocked ArticleGalleyDAO that returns our test data.
import('classes.article.ArticleGalleyDAO');
$articleGalleyDao = $this->getMock('ArticleGalleyDAO', array('getBySubmissionId'));
$articleGalleyDao->expects($this->any())->method('getBySubmissionId')->will($this->returnValue($galleys));
DAORegistry::registerDAO('ArticleGalleyDAO', $articleGalleyDao);
// FIXME: ArticleGalleyDAO::getBySubmissionId returns iterator; array expected here. Fix expectations.
// Create a mocked PublishedArticleDAO that returns our test article.
import('classes.article.PublishedArticleDAO');
$articleDao = $this->getMock('PublishedArticleDAO', array('getPublishedArticleByArticleId'));
$articleDao->expects($this->any())->method('getPublishedArticleByArticleId')->will($this->returnValue($article));
DAORegistry::registerDAO('PublishedArticleDAO', $articleDao);
//
// Test
//
// OAI record
$record = new OAIRecord();
$record->setData('article', $article);
$record->setData('galleys', $galleys);
$record->setData('journal', $journal);
$record->setData('section', $section);
$record->setData('issue', $issue);
// Instantiate the OAI meta-data format.
$prefix = OAIMetadataFormatPlugin_DC::getMetadataPrefix();
$schema = OAIMetadataFormatPlugin_DC::getSchema();
$namespace = OAIMetadataFormatPlugin_DC::getNamespace();
$mdFormat = new OAIMetadataFormat_DC($prefix, $schema, $namespace);
$xml = $mdFormat->toXml($record);
self::assertXmlStringEqualsXmlFile('tests/plugins/oaiMetadataFormats/dc/expectedResult.xml', $xml);
}
/**
* Save settings.
*/
function execute()
{
$articleDao =& DAORegistry::getDAO('ArticleDAO');
$signoffDao =& DAORegistry::getDAO('SignoffDAO');
$sectionEditorSubmissionDao =& DAORegistry::getDAO('SectionEditorSubmissionDAO');
$application =& PKPApplication::getApplication();
$request =& $application->getRequest();
$user =& $request->getUser();
$router =& $request->getRouter();
$journal =& $router->getContext($request);
$article = new Article();
$article->setLocale($journal->getPrimaryLocale());
// FIXME in bug #5543
$article->setUserId($user->getId());
$article->setJournalId($journal->getId());
$article->setSectionId($this->getData('sectionId'));
$article->setLanguage(String::substr($journal->getPrimaryLocale(), 0, 2));
$article->setTitle($this->getData('title'), null);
// Localized
$article->setAbstract($this->getData('abstract'), null);
// Localized
$article->setDiscipline($this->getData('discipline'), null);
// Localized
$article->setSubjectClass($this->getData('subjectClass'), null);
// Localized
$article->setSubject($this->getData('subject'), null);
// Localized
$article->setCoverageGeo($this->getData('coverageGeo'), null);
// Localized
$article->setCoverageChron($this->getData('coverageChron'), null);
// Localized
$article->setCoverageSample($this->getData('coverageSample'), null);
// Localized
$article->setType($this->getData('type'), null);
// Localized
$article->setSponsor($this->getData('sponsor'), null);
// Localized
$article->setCitations($this->getData('citations'));
$article->setPages($this->getData('pages'));
// Set some default values so the ArticleDAO doesn't complain when adding this article
$article->setDateSubmitted(Core::getCurrentDate());
$article->setStatus(STATUS_PUBLISHED);
$article->setSubmissionProgress(0);
$article->stampStatusModified();
$article->setCurrentRound(1);
$article->setFastTracked(1);
$article->setHideAuthor(0);
$article->setCommentsStatus(0);
// Insert the article to get it's ID
$articleDao->insertArticle($article);
$articleId = $article->getId();
// Add authors
$authors = $this->getData('authors');
for ($i = 0, $count = count($authors); $i < $count; $i++) {
if ($authors[$i]['authorId'] > 0) {
// Update an existing author
$author =& $article->getAuthor($authors[$i]['authorId']);
$isExistingAuthor = true;
} else {
// Create a new author
$author = new Author();
$isExistingAuthor = false;
}
if ($author != null) {
$author->setSubmissionId($articleId);
$author->setFirstName($authors[$i]['firstName']);
$author->setMiddleName($authors[$i]['middleName']);
$author->setLastName($authors[$i]['lastName']);
if (array_key_exists('affiliation', $authors[$i])) {
$author->setAffiliation($authors[$i]['affiliation'], null);
}
$author->setCountry($authors[$i]['country']);
$author->setEmail($authors[$i]['email']);
$author->setUrl($authors[$i]['url']);
if (array_key_exists('competingInterests', $authors[$i])) {
$author->setCompetingInterests($authors[$i]['competingInterests'], null);
}
$author->setBiography($authors[$i]['biography'], null);
$author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0);
$author->setSequence($authors[$i]['seq']);
if ($isExistingAuthor == false) {
$article->addAuthor($author);
}
}
}
// Add the submission files as galleys
import('classes.file.TemporaryFileManager');
import('classes.file.ArticleFileManager');
$tempFileIds = $this->getData('tempFileId');
$temporaryFileManager = new TemporaryFileManager();
$articleFileManager = new ArticleFileManager($articleId);
foreach (array_keys($tempFileIds) as $locale) {
$temporaryFile = $temporaryFileManager->getFile($tempFileIds[$locale], $user->getId());
$fileId = null;
if ($temporaryFile) {
$fileId = $articleFileManager->temporaryFileToArticleFile($temporaryFile, ARTICLE_FILE_SUBMISSION);
$fileType = $temporaryFile->getFileType();
if (strstr($fileType, 'html')) {
import('classes.article.ArticleHTMLGalley');
$galley = new ArticleHTMLGalley();
} else {
import('classes.article.ArticleGalley');
$galley = new ArticleGalley();
}
$galley->setArticleId($articleId);
$galley->setFileId($fileId);
$galley->setLocale($locale);
if ($galley->isHTMLGalley()) {
$galley->setLabel('HTML');
} else {
if (strstr($fileType, 'pdf')) {
$galley->setLabel('PDF');
} else {
if (strstr($fileType, 'postscript')) {
$galley->setLabel('Postscript');
} else {
if (strstr($fileType, 'xml')) {
$galley->setLabel('XML');
} else {
$galley->setLabel(__('common.untitled'));
}
}
}
}
$galleyDao =& DAORegistry::getDAO('ArticleGalleyDAO');
$galleyDao->insertGalley($galley);
}
if ($locale == $journal->getPrimaryLocale()) {
$article->setSubmissionFileId($fileId);
$article->SetReviewFileId($fileId);
}
// Update file search index
import('classes.search.ArticleSearchIndex');
if (isset($galley)) {
ArticleSearchIndex::updateFileIndex($galley->getArticleId(), ARTICLE_SEARCH_GALLEY_FILE, $galley->getFileId());
}
}
// Designate this as the review version by default.
$authorSubmissionDao =& DAORegistry::getDAO('AuthorSubmissionDAO');
$authorSubmission =& $authorSubmissionDao->getAuthorSubmission($articleId);
import('classes.submission.author.AuthorAction');
AuthorAction::designateReviewVersion($authorSubmission, true);
// Accept the submission
$sectionEditorSubmission =& $sectionEditorSubmissionDao->getSectionEditorSubmission($articleId);
$articleFileManager = new ArticleFileManager($articleId);
$sectionEditorSubmission->setReviewFile($articleFileManager->getFile($article->getSubmissionFileId()));
import('classes.submission.sectionEditor.SectionEditorAction');
SectionEditorAction::recordDecision($sectionEditorSubmission, SUBMISSION_EDITOR_DECISION_ACCEPT);
// Create signoff infrastructure
$copyeditInitialSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_INITIAL', ASSOC_TYPE_ARTICLE, $articleId);
$copyeditAuthorSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_AUTHOR', ASSOC_TYPE_ARTICLE, $articleId);
$copyeditFinalSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_FINAL', ASSOC_TYPE_ARTICLE, $articleId);
$copyeditInitialSignoff->setUserId(0);
$copyeditAuthorSignoff->setUserId($user->getId());
$copyeditFinalSignoff->setUserId(0);
$signoffDao->updateObject($copyeditInitialSignoff);
$signoffDao->updateObject($copyeditAuthorSignoff);
$signoffDao->updateObject($copyeditFinalSignoff);
$layoutSignoff = $signoffDao->build('SIGNOFF_LAYOUT', ASSOC_TYPE_ARTICLE, $articleId);
$layoutSignoff->setUserId(0);
$signoffDao->updateObject($layoutSignoff);
$proofAuthorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_AUTHOR', ASSOC_TYPE_ARTICLE, $articleId);
$proofProofreaderSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_PROOFREADER', ASSOC_TYPE_ARTICLE, $articleId);
$proofLayoutEditorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_LAYOUT', ASSOC_TYPE_ARTICLE, $articleId);
$proofAuthorSignoff->setUserId($user->getId());
$proofProofreaderSignoff->setUserId(0);
$proofLayoutEditorSignoff->setUserId(0);
$signoffDao->updateObject($proofAuthorSignoff);
$signoffDao->updateObject($proofProofreaderSignoff);
$signoffDao->updateObject($proofLayoutEditorSignoff);
import('classes.author.form.submit.AuthorSubmitForm');
AuthorSubmitForm::assignEditors($article);
$articleDao->updateArticle($article);
// Add to end of editing queue
import('classes.submission.editor.EditorAction');
if (isset($galley)) {
EditorAction::expediteSubmission($article);
}
if ($this->getData('destination') == "issue") {
// Add to an existing issue
$issueId = $this->getData('issueId');
$this->scheduleForPublication($articleId, $issueId);
}
// Index article.
import('classes.search.ArticleSearchIndex');
ArticleSearchIndex::indexArticleMetadata($article);
// Import the references list.
$citationDao =& DAORegistry::getDAO('CitationDAO');
$rawCitationList = $article->getCitations();
$citationDao->importCitations($request, ASSOC_TYPE_ARTICLE, $articleId, $rawCitationList);
}
/**
* Import papers (including metadata and files).
*/
function importPapers()
{
if ($this->hasOption('verbose')) {
printf("Importing papers\n");
}
import('classes.file.PaperFileManager');
import('classes.search.PaperSearchIndex');
$userDao =& DAORegistry::getDAO('UserDAO');
$roleDao =& DAORegistry::getDAO('RoleDAO');
$trackDao =& DAORegistry::getDAO('TrackDAO');
$paperDao =& DAORegistry::getDAO('PaperDAO');
$publishedPaperDao =& DAORegistry::getDAO('PublishedPaperDAO');
$galleyDao =& DAORegistry::getDAO('PaperGalleyDAO');
$unassignedTrackId = null;
$result =& $this->importDao->retrieve('SELECT * FROM papers ORDER by id');
while (!$result->EOF) {
$row =& $result->fields;
$schedConf =& $this->schedConfMap[$row['cf']];
$schedConfId = $schedConf->getId();
// Bring in the primary user for this paper.
$user = $userDao->getUserByUsername(Core::cleanVar($row['login']));
if (!$user) {
unset($user);
$user = new User();
$user->setUsername(Core::cleanVar($row['login']));
$user->setFirstName(Core::cleanVar($row['first_name']));
$user->setLastName(Core::cleanVar($row['surname']));
$user->setAffiliation(Core::cleanVar($row['affiliation']), Locale::getLocale());
$user->setEmail(Core::cleanVar($row['email']));
$user->setUrl(Core::cleanVar($row['url']));
$user->setBiography(Core::cleanVar($row['bio']), Locale::getLocale());
$user->setLocales(array());
$user->setDateRegistered($row['created']);
$user->setDateLastLogin($row['created']);
$user->setMustChangePassword(1);
$password = Validation::generatePassword();
$user->setPassword(Validation::encryptCredentials($user->getUsername(), $password));
if ($this->hasOption('emailUsers')) {
import('classes.mail.MailTemplate');
$mail = new MailTemplate('USER_REGISTER');
$mail->setFrom($schedConf->getSetting('contactEmail'), $schedConf->getSetting('contactName'));
$mail->assignParams(array('username' => $user->getUsername(), 'password' => $password, 'conferenceName' => $schedConf->getFullTitle()));
$mail->addRecipient($user->getEmail(), $user->getFullName());
$mail->send();
}
$user->setDisabled(0);
$otherUser =& $userDao->getUserByEmail(Core::cleanVar($row['email']));
if ($otherUser !== null) {
// User exists with this email -- munge it to make unique
$user->setEmail('ocs-' . Core::cleanVar($row['login']) . '+' . Core::cleanVar($row['email']));
$this->conflicts[] = array(&$otherUser, &$user);
}
unset($otherUser);
$userDao->insertUser($user);
// Make this user a author
$role = new Role();
$role->setSchedConfId($schedConf->getId());
$role->setConferenceId($schedConf->getConferenceId());
$role->setUserId($user->getId());
$role->setRoleId(ROLE_ID_AUTHOR);
$roleDao->insertRole($role);
unset($role);
}
$userId = $user->getId();
// Bring in the basic entry for the paper
$paper = new Paper();
$paper->setUserId($userId);
$paper->setLocale(Locale::getPrimaryLocale());
$paper->setSchedConfId($schedConfId);
$oldTrackId = $row['primary_track_id'];
if (!$oldTrackId || !isset($this->trackMap[$oldTrackId])) {
$oldTrackId = $row['secondary_track_id'];
}
if (!$oldTrackId || !isset($this->trackMap[$oldTrackId])) {
if (!$unassignedTrackId) {
// Create an "Unassigned" track to use for submissions
// that didn't have a track in OCS 1.x.
$track = new Track();
$track->setSchedConfId($schedConf->getId());
$track->setTitle('UNASSIGNED', Locale::getLocale());
$track->setSequence(REALLY_BIG_NUMBER);
$track->setDirectorRestricted(1);
$track->setMetaReviewed(1);
$unassignedTrackId = $trackDao->insertTrack($track);
}
$newTrackId = $unassignedTrackId;
} else {
$newTrackId = $this->trackMap[$oldTrackId];
}
$paper->setTrackId($newTrackId);
$paper->setTitle(Core::cleanVar($row['title']), Locale::getLocale());
$paper->setAbstract(Core::cleanVar($row['abstract']), Locale::getLocale());
$paper->setDiscipline(Core::cleanVar($row['discipline']), Locale::getLocale());
$paper->setSponsor(Core::cleanVar($row['sponsor']), Locale::getLocale());
$paper->setSubject(Core::cleanVar($row['topic']), Locale::getLocale());
$paper->setLanguage(Core::cleanVar($row['language']));
$paper->setDateSubmitted($row['created']);
$paper->setDateStatusModified($row['timestamp']);
// $paper->setTypeConst($row['present_format'] == 'multiple' ? SUBMISSION_TYPE_PANEL : SUBMISSION_TYPE_SINGLE); FIXME
$paper->setCurrentRound(REVIEW_ROUND_ABSTRACT);
$paper->setSubmissionProgress(0);
$paper->setPages('');
// Bring in authors
$firstNames = split("\n", Core::cleanVar($row['first_name'] . "\n" . $row['add_first_names']));
$lastNames = split("\n", Core::cleanVar($row['surname'] . "\n" . $row['add_surnames']));
$emails = split("\n", Core::cleanVar($row['email'] . "\n" . $row['add_emails']));
$affiliations = split("\n", Core::cleanVar($row['affiliation'] . "\n" . $row['add_affiliations']));
$urls = split("\n", Core::cleanVar($row['url'] . "\n" . $row['add_urls']));
foreach ($emails as $key => $email) {
if (empty($email)) {
continue;
}
$author = new Author();
$author->setEmail($email);
$author->setFirstName($firstNames[$key]);
$author->setLastName($lastNames[$key]);
$author->setAffiliation($affiliations[$key], Locale::getLocale());
@$author->setUrl($urls[$key]);
// Suppress warnings from inconsistent OCS 1.x data
$author->setPrimaryContact($key == 0 ? 1 : 0);
$paper->addAuthor($author);
unset($author);
}
switch ($row['accepted']) {
case 'true':
$paper->setStatus(STATUS_PUBLISHED);
$paperId = $paperDao->insertPaper($paper);
$publishedPaper = new PublishedPaper();
$publishedPaper->setPaperId($paperId);
$publishedPaper->setSchedConfId($schedConfId);
$publishedPaper->setDatePublished(Core::getCurrentDate());
$publishedPaper->setSeq(REALLY_BIG_NUMBER);
$publishedPaper->setViews(0);
$publishedPaperDao->insertPublishedPaper($publishedPaper);
$publishedPaperDao->resequencePublishedPapers($paper->getTrackId(), $schedConfId);
break;
case 'reject':
$paper->setStatus(STATUS_DECLINED);
$paperId = $paperDao->insertPaper($paper);
break;
default:
$paper->setStatus(STATUS_QUEUED);
$paperId = $paperDao->insertPaper($paper);
}
$this->paperMap[$row['id']] =& $paper;
$paperFileManager = new PaperFileManager($paperId);
if (!empty($row['paper']) && $row['paper'] != 'PDF') {
$format = 'text/html';
$extension = $paperFileManager->getDocumentExtension($format);
$fileId = $paperFileManager->writeSubmissionFile('migratedFile' . $extension, $row['paper'], $format);
$paper->setSubmissionFileId($fileId);
$paperDao->updatePaper($paper);
$fileId = $paperFileManager->writePublicFile('migratedGalley' . $extension, $row['paper'], $format);
PaperSearchIndex::updateFileIndex($paperId, PAPER_SEARCH_GALLEY_FILE, $fileId);
if (strstr($format, 'html')) {
$galley = new PaperHTMLGalley();
$galley->setLabel('HTML');
} else {
$galley = new PaperGalley();
switch ($format) {
case 'application/pdf':
$galley->setLabel('PDF');
break;
case 'application/postscript':
$galley->setLabel('PostScript');
break;
case 'application/msword':
$galley->setLabel('Word');
break;
case 'text/xml':
$galley->setLabel('XML');
break;
case 'application/powerpoint':
$galley->setLabel('Slideshow');
break;
default:
$galley->setLabel('Untitled');
break;
}
}
$galley->setLocale(Locale::getLocale());
$galley->setPaperId($paperId);
$galley->setFileId($fileId);
$galleyDao->insertGalley($galley);
unset($galley);
} elseif ($row['paper'] == 'PDF') {
$fileId = $paperFileManager->copySubmissionFile($this->importPath . '/papers/' . $row['pdf'], 'application/pdf');
$paper->setSubmissionFileId($fileId);
$paperDao->updatePaper($paper);
$fileId = $paperFileManager->copyPublicFile($this->importPath . '/papers/' . $row['pdf'], 'application/pdf');
PaperSearchIndex::updateFileIndex($paperId, PAPER_SEARCH_GALLEY_FILE, $fileId);
$galley = new PaperGalley();
$galley->setLabel('PDF');
$galley->setLocale(Locale::getLocale());
$galley->setPaperId($paperId);
$galley->setFileId($fileId);
$galleyDao->insertGalley($galley);
unset($galley);
}
// FIXME: The following fields from OCS 1.x are UNUSED:
// program_insert approach coverage format relation appendix_names appendix_dates
// appendix appendix_pdf secondary_track_id multiple_* restrict_access paper_email
// delete_paper comment_email
unset($user);
unset($paper);
unset($schedConf);
unset($paperFileManager);
$result->MoveNext();
}
$result->Close();
}
/**
* Save changes to paper.
* @return int the paper ID
*/
function execute()
{
$paperDao = DAORegistry::getDAO('PaperDAO');
if (isset($this->paper)) {
$reviewMode = $this->paper->getReviewMode();
// Update existing paper
$this->paper->setTrackId($this->getData('trackId'));
$this->paper->setLocale($this->getData('locale'));
$this->paper->setCommentsToDirector($this->getData('commentsToDirector'));
$this->paper->setData('sessionType', $this->getData('sessionType'));
if ($this->paper->getSubmissionProgress() <= $this->step) {
$this->paper->stampStatusModified();
if ($reviewMode == REVIEW_MODE_ABSTRACTS_ALONE) {
$this->paper->setSubmissionProgress($this->step + 2);
} else {
$this->paper->setSubmissionProgress($this->step + 1);
}
}
$paperDao->updatePaper($this->paper);
} else {
// Insert new paper
$conference =& Request::getConference();
$schedConf =& Request::getSchedConf();
$user =& Request::getUser();
$this->paper = new Paper();
$this->paper->setLocale($this->getData('locale'));
$this->paper->setUserId($user->getId());
$this->paper->setSchedConfId($schedConf->getId());
$this->paper->setTrackId($this->getData('trackId'));
$this->paper->stampStatusModified();
$reviewMode = $schedConf->getSetting('reviewMode');
$this->paper->setReviewMode($reviewMode);
$this->paper->setLanguage(String::substr($this->paper->getLocale(), 0, 2));
$this->paper->setCommentsToDirector($this->getData('commentsToDirector'));
switch ($reviewMode) {
case REVIEW_MODE_ABSTRACTS_ALONE:
case REVIEW_MODE_BOTH_SEQUENTIAL:
$this->paper->setSubmissionProgress($this->step + 2);
$this->paper->setCurrentRound(REVIEW_ROUND_ABSTRACT);
break;
case REVIEW_MODE_PRESENTATIONS_ALONE:
case REVIEW_MODE_BOTH_SIMULTANEOUS:
$this->paper->setSubmissionProgress($this->step + 1);
$this->paper->setCurrentRound(REVIEW_ROUND_PRESENTATION);
break;
}
$this->paper->setData('sessionType', $this->getData('sessionType'));
$paperDao->insertPaper($this->paper);
$this->paperId = $this->paper->getPaperId();
// Set user to initial author
$authorDao = DAORegistry::getDAO('AuthorDAO');
/* @var $authorDao AuthorDAO */
$user =& Request::getUser();
$author = new Author();
$author->setSubmissionId($this->paperId);
$author->setFirstName($user->getFirstName());
$author->setMiddleName($user->getMiddleName());
$author->setLastName($user->getLastName());
$author->setAffiliation($user->getAffiliation(null), null);
$author->setCountry($user->getCountry());
$author->setEmail($user->getEmail());
$author->setUrl($user->getUrl());
$author->setBiography($user->getBiography(null), null);
$author->setPrimaryContact(1);
$authorDao->insertObject($author);
}
return $this->paperId;
}
$isNewAuthor = true;
}
$uploadFileSpecified = isset($_FILES['file']) && isset($_FILES['file']['name']) && !empty($_FILES['file']['name']);
$author->setFirstName($first_name);
$author->setLastName($last_name);
$author->commit();
// Reset types
$types = Input::Get('type', 'array', array());
AuthorAssignedType::ResetAuthorAssignedTypes($author->getId());
foreach ($types as $type) {
$author->setType($type);
}
$author->setSkype(Input::Get('skype'));
$author->setJabber(Input::Get('jabber'));
$author->setAim(Input::Get('aim'));
$author->setEmail(Input::Get('email'));
$authorBiography = array();
$authorBiography['biography'] = Input::Get("txt_biography", "string");
$authorBiography['language'] = Input::Get("lang", "int", 0);
$authorBiography['first_name'] = Input::Get("lang_first_name");
$authorBiography['last_name'] = Input::Get("lang_last_name");
$author->setBiography($authorBiography);
if ($uploadFileSpecified) {
$attributes = array();
$image = Image::OnImageUpload($_FILES['file'], $attributes);
if (PEAR::isError($image)) {
camp_html_add_msg($image->getMessage());
} else {
$author->setImage($image->getImageId());
}
}
function importArticles()
{
assert($this->xml->name == 'articles');
$articleDAO =& DAORegistry::getDAO('ArticleDAO');
$articles = $articleDAO->getArticlesByJournalId($this->journal->getId());
$journalFileManager = new JournalFileManager($this->journal);
$publicFileManager =& new PublicFileManager();
$this->nextElement();
while ($this->xml->name == 'article') {
$articleXML = $this->getCurrentElementAsDom();
$article = new Article();
$article->setJournalId($this->journal->getId());
$article->setUserId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $articleXML->userId));
$article->setSectionId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_SECTION, (int) $articleXML->sectionId));
$article->setLocale((string) $articleXML->locale);
$article->setLanguage((string) $articleXML->language);
$article->setCommentsToEditor((string) $articleXML->commentsToEditor);
$article->setCitations((string) $articleXML->citations);
$article->setDateSubmitted((string) $articleXML->dateSubmitted);
$article->setDateStatusModified((string) $articleXML->dateStatusModified);
$article->setLastModified((string) $articleXML->lastModified);
$article->setStatus((int) $articleXML->status);
$article->setSubmissionProgress((int) $articleXML->submissionProgress);
$article->setCurrentRound((int) $articleXML->currentRound);
$article->setPages((string) $articleXML->pages);
$article->setFastTracked((int) $articleXML->fastTracked);
$article->setHideAuthor((int) $articleXML->hideAuthor);
$article->setCommentsStatus((int) $articleXML->commentsStatus);
$articleDAO->insertArticle($article);
$oldArticleId = (int) $articleXML->oldId;
$this->restoreDataObjectSettings($articleDAO, $articleXML->settings, 'article_settings', 'article_id', $article->getId());
$article =& $articleDAO->getArticle($article->getId());
// Reload article with restored settings
$covers = $article->getFileName(null);
if ($covers) {
foreach ($covers as $locale => $oldCoverFileName) {
$sourceFile = $this->publicFolderPath . '/' . $oldCoverFileName;
$extension = $publicFileManager->getExtension($oldCoverFileName);
$destFile = 'cover_issue_' . $article->getId() . "_{$locale}.{$extension}";
$publicFileManager->copyJournalFile($this->journal->getId(), $sourceFile, $destFile);
unlink($sourceFile);
$article->setFileName($destFile, $locale);
$articleDAO->updateArticle($article);
}
}
$articleFileManager = new ArticleFileManager($article->getId());
$authorDAO =& DAORegistry::getDAO('AuthorDAO');
foreach ($articleXML->author as $authorXML) {
$author = new Author();
$author->setArticleId($article->getId());
$author->setFirstName((string) $authorXML->firstName);
$author->setMiddleName((string) $authorXML->middleName);
$author->setLastName((string) $authorXML->lastName);
$author->setSuffix((string) $authorXML->suffix);
$author->setCountry((string) $authorXML->country);
$author->setEmail((string) $authorXML->email);
$author->setUrl((string) $authorXML->url);
$author->setUserGroupId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_GROUP, (int) $authorXML->userGroupId));
$author->setPrimaryContact((int) $authorXML->primaryContact);
$author->setSequence((int) $authorXML->sequence);
$authorDAO->insertAuthor($author);
$this->restoreDataObjectSettings($authorDAO, $authorXML->settings, 'author_settings', 'author_id', $author->getId());
unset($author);
}
$articleEmailLogDAO =& DAORegistry::getDAO('ArticleEmailLogDAO');
$emailLogsXML = array();
foreach ($articleXML->emailLogs->emailLog as $emailLogXML) {
array_unshift($emailLogsXML, $emailLogXML);
}
foreach ($emailLogsXML as $emailLogXML) {
$emailLog = new ArticleEmailLogEntry();
$emailLog->setAssocType(ASSOC_TYPE_ARTICLE);
$emailLog->setAssocId($article->getId());
$emailLog->setSenderId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $emailLogXML->senderId));
$emailLog->setDateSent((string) $emailLogXML->dateSent);
$emailLog->setIPAddress((string) $emailLogXML->IPAddress);
$emailLog->setEventType((int) $emailLogXML->eventType);
$emailLog->setFrom((string) $emailLogXML->from);
$emailLog->setRecipients((string) $emailLogXML->recipients);
$emailLog->setCcs((string) $emailLogXML->ccs);
$emailLog->setBccs((string) $emailLogXML->bccs);
$emailLog->setSubject((string) $emailLogXML->subject);
$emailLog->setBody((string) $emailLogXML->body);
$articleEmailLogDAO->insertObject($emailLog);
$this->idTranslationTable->register(INTERNAL_TRANSFER_OBJECT_ARTICLE_EMAIL_LOG, (int) $emailLogXML->oldId, $emailLog->getId());
}
$articleFileDAO =& DAORegistry::getDAO('ArticleFileDAO');
foreach ($articleXML->articleFile as $articleFileXML) {
try {
$articleFile = new ArticleFile();
$articleFile->setArticleId($article->getId());
$articleFile->setSourceFileId((int) $articleFileXML->sourceFileId);
$articleFile->setSourceRevision((int) $articleFileXML->sourceRevision);
$articleFile->setRevision((int) $articleFileXML->revision);
$articleFile->setFileName((string) $articleFileXML->fileName);
$articleFile->setFileType((string) $articleFileXML->fileType);
$articleFile->setFileSize((string) $articleFileXML->fileSize);
$articleFile->setOriginalFileName((string) $articleFileXML->originalFileName);
$articleFile->setFileStage((int) $articleFileXML->fileStage);
$articleFile->setAssocId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_EMAIL_LOG, (int) $articleFileXML->assocId));
$articleFile->setDateUploaded((string) $articleFileXML->dateUploaded);
$articleFile->setDateModified((string) $articleFileXML->dateModified);
$articleFile->setRound((int) $articleFileXML->round);
$articleFile->setViewable((int) $articleFileXML->viewable);
$articleFileDAO->insertArticleFile($articleFile);
$oldArticleFileId = (int) $articleFileXML->oldId;
$oldFileName = $articleFile->getFileName();
$stagePath = $articleFileManager->fileStageToPath($articleFile->getFileStage());
$fileInTransferPackage = $this->journalFolderPath . "/articles/{$oldArticleId}/{$stagePath}/{$oldFileName}";
$newFileName = $articleFileManager->generateFilename($articleFile, $articleFile->getFileStage(), $articleFile->getOriginalFileName());
$newFilePath = "/articles/" . $article->getId() . "/{$stagePath}/{$newFileName}";
$journalFileManager->copyFile($fileInTransferPackage, $journalFileManager->filesDir . $newFilePath);
unlink($fileInTransferPackage);
$articleFileDAO->updateArticleFile($articleFile);
$this->idTranslationTable->register(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, $oldArticleFileId, $articleFile->getFileId());
} catch (Exception $e) {
}
}
$articleFiles = $articleFileDAO->getArticleFilesByArticle($article->getId());
foreach ($articleFiles as $articleFile) {
try {
$articleFile->setSourceFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, $articleFile->getSourceFileId()));
$articleFileDAO->updateArticleFile($articleFile);
} catch (Exception $e) {
}
}
$suppFileDAO =& DAORegistry::getDAO('SuppFileDAO');
foreach ($articleXML->suppFile as $suppFileXML) {
$suppFile =& new SuppFile();
$suppFile->setArticleId($article->getId());
$suppFile->setRemoteURL((string) $suppFileXML->remoteURL);
$suppFile->setFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $suppFileXML->fileId));
$suppFile->setType((string) $suppFileXML->type);
$suppFile->setDateCreated((string) $suppFileXML->dateCreated);
$suppFile->setLanguage((string) $suppFileXML->language);
$suppFile->setShowReviewers((int) $suppFileXML->showReviewers);
$suppFile->setDateSubmitted((string) $suppFileXML->dateSubmitted);
$suppFile->setSequence((int) $suppFileXML->sequence);
$suppFileDAO->insertSuppFile($suppFile);
$this->restoreDataObjectSettings($suppFileDAO, $suppFileXML->settings, 'article_supp_file_settings', 'supp_id', $suppFile->getId());
}
$articleCommentDAO =& DAORegistry::getDAO('ArticleCommentDAO');
foreach ($articleXML->articleComment as $articleCommentXML) {
$articleComment = new ArticleComment();
$articleComment->setArticleId($article->getId());
$articleComment->setAssocId($article->getId());
$articleComment->setCommentType((int) $articleCommentXML->commentType);
$articleComment->setRoleId((int) $articleCommentXML->roleId);
$articleComment->setAuthorId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $articleCommentXML->authorId));
$articleComment->setCommentTitle((string) $articleCommentXML->commentTitle);
$articleComment->setComments((string) $articleCommentXML->comments);
$articleComment->setDatePosted((string) $articleCommentXML->datePosted);
$articleComment->setDateModified((string) $articleCommentXML->dateModified);
$articleComment->setViewable((int) $articleCommentXML->viewable);
$articleCommentDAO->insertArticleComment($articleComment);
}
$articleGalleyDAO =& DAORegistry::getDAO('ArticleGalleyDAO');
foreach ($articleXML->articleGalley as $articleGalleyXML) {
$articleGalley = null;
if ($articleGalleyXML->htmlGalley == "1") {
$articleGalley = new ArticleHTMLGalley();
} else {
$articleGalley = new ArticleGalley();
}
$articleGalley->setArticleId($article->getId());
$articleGalley->setLocale((string) $articleGalleyXML->locale);
$articleGalley->setFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleGalleyXML->fileId));
$articleGalley->setLabel((string) $articleGalleyXML->label);
$articleGalley->setSequence((int) $articleGalleyXML->sequence);
$articleGalley->setRemoteURL((string) $articleGalleyXML->remoteURL);
if ($articleGalley instanceof ArticleHTMLGalley) {
$articleGalley->setStyleFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleGalleyXML->styleFileId));
}
$articleGalleyDAO->insertGalley($articleGalley);
if ($articleGalley instanceof ArticleHTMLGalley) {
foreach ($articleGalleyXML->htmlGalleyImage as $articleGalleyImageXML) {
$imageId = $this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleGalleyImageXML);
$articleGalleyDAO->insertGalleyImage($articleGalley->getId(), $imageId);
}
}
$this->restoreDataObjectSettings($articleGalleyDAO, $articleGalleyXML->settings, 'article_galley_settings', 'galley_id', $articleGalley->getId());
}
$noteDAO =& DAORegistry::getDAO('NoteDAO');
foreach ($articleXML->articleNote as $articleNoteXML) {
$articleNote = new Note();
$articleNote->setUserId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $articleNoteXML->userId));
$articleNote->setFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleNoteXML->fileId));
$articleNote->setAssocType(ASSOC_TYPE_ARTICLE);
$articleNote->setAssocId($article->getId());
$articleNote->setDateCreated((string) $articleNoteXML->dateCreated);
$articleNote->setDateModified((string) $articleNoteXML->dateModified);
$articleNote->setContents((string) $articleNoteXML->contents);
$articleNote->setTitle((string) $articleNoteXML->title);
$noteDAO->insertObject($articleNote);
}
$editAssignmentDAO =& DAORegistry::getDAO('EditAssignmentDAO');
foreach ($articleXML->editAssignment as $editAssignmentXML) {
$editAssignment = new EditAssignment();
$editAssignment->setArticleId($article->getId());
$editAssignment->setEditorId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $editAssignmentXML->editorId));
$editAssignment->setCanReview((int) $editAssignmentXML->canReview);
$editAssignment->setCanEdit((int) $editAssignmentXML->canEdit);
$editAssignment->setDateUnderway((string) $editAssignmentXML->dateUnderway);
$editAssignment->setDateNotified((string) $editAssignmentXML->dateNotified);
$editAssignmentDAO->insertEditAssignment($editAssignment);
}
$reviewAssignmentDAO =& DAORegistry::getDAO('ReviewAssignmentDAO');
$reviewFormResponseDAO =& DAORegistry::getDAO('ReviewFormResponseDAO');
foreach ($articleXML->reviewAssignment as $reviewAssignmentXML) {
$reviewAssignment = new ReviewAssignment();
$reviewAssignment->setSubmissionId($article->getId());
$reviewAssignment->setReviewerId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $reviewAssignmentXML->reviewerId));
try {
$reviewAssignment->setReviewerFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $reviewAssignmentXML->reviewerFileId));
} catch (Exception $e) {
$this->logger->log("Arquivo do artigo {$oldArticleId} não encontrado. ID: " . (int) $reviewAssignmentXML->reviewerFileId . "\n");
}
$reviewAssignment->setReviewFormId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_REVIEW_FORM, (int) $reviewAssignmentXML->reviewFormId));
$reviewAssignment->setReviewRoundId((int) $reviewAssignmentXML->reviewRoundId);
$reviewAssignment->setStageId((int) $reviewAssignmentXML->stageId);
$reviewAssignment->setReviewerFullName((string) $reviewAssignmentXML->reviewerFullName);
$reviewAssignment->setCompetingInterests((string) $reviewAssignmentXML->competingInterests);
$reviewAssignment->setRegretMessage((string) $reviewAssignmentXML->regretMessage);
$reviewAssignment->setRecommendation((string) $reviewAssignmentXML->recommendation);
$reviewAssignment->setDateAssigned((string) $reviewAssignmentXML->dateAssigned);
$reviewAssignment->setDateNotified((string) $reviewAssignmentXML->dateNotified);
$reviewAssignment->setDateConfirmed((string) $reviewAssignmentXML->dateConfirmed);
$reviewAssignment->setDateCompleted((string) $reviewAssignmentXML->dateCompleted);
$reviewAssignment->setDateAcknowledged((string) $reviewAssignmentXML->dateAcknowledged);
$reviewAssignment->setDateDue((string) $reviewAssignmentXML->dateDue);
$reviewAssignment->setDateResponseDue((string) $reviewAssignmentXML->dateResponseDue);
$reviewAssignment->setLastModified((string) $reviewAssignmentXML->lastModified);
$reviewAssignment->setDeclined((int) $reviewAssignmentXML->declined);
$reviewAssignment->setReplaced((int) $reviewAssignmentXML->replaced);
$reviewAssignment->setCancelled((int) $reviewAssignmentXML->cancelled);
$reviewAssignment->setQuality((int) $reviewAssignmentXML->quality);
$reviewAssignment->setDateRated((string) $reviewAssignmentXML->dateRated);
$reviewAssignment->setDateReminded((string) $reviewAssignmentXML->dateReminded);
$reviewAssignment->setReminderWasAutomatic((int) $reviewAssignmentXML->reminderWasAutomatic);
$reviewAssignment->setRound((int) $reviewAssignmentXML->round);
$reviewAssignment->setReviewRevision((int) $reviewAssignmentXML->reviewRevision);
$reviewAssignment->setReviewMethod((int) $reviewAssignmentXML->reviewMethod);
$reviewAssignment->setUnconsidered((int) $reviewAssignmentXML->unconsidered);
$reviewAssignmentDAO->insertObject($reviewAssignment);
foreach ($reviewAssignmentXML->formResponses->formResponse as $formResponseXML) {
$reviewFormResponseDAO->update('INSERT INTO review_form_responses
(review_form_element_id, review_id, response_type, response_value)
VALUES
(?, ?, ?, ?)', array($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_REVIEW_FORM_ELEMENT, (int) $formResponseXML->reviewFormElementId), $reviewAssignment->getId(), (string) $formResponseXML->responseType, (string) $formResponseXML->responseValue));
}
}
$signoffDAO =& DAORegistry::getDAO('SignoffDAO');
foreach ($articleXML->signoff as $signoffXML) {
$signoff = new Signoff();
$signoff->setAssocType(ASSOC_TYPE_ARTICLE);
$signoff->setAssocId($article->getId());
$signoff->setUserId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $signoffXML->userId));
$signoff->setFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $signoffXML->fileId));
$signoff->setUserGroupId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_GROUP, (int) $signoffXML->userGroupId));
$signoff->setSymbolic((string) $signoffXML->symbolic);
$signoff->setFileRevision((int) $signoffXML->fileRevision);
$signoff->setDateUnderway((string) $signoffXML->dateUnderway);
$signoff->setDateNotified((string) $signoffXML->dateNotified);
$signoff->setDateCompleted((string) $signoffXML->dateCompleted);
$signoff->setDateAcknowledged((string) $signoffXML->dateAcknowledged);
$signoffDAO->insertObject($signoff);
}
$editorSubmissionDAO =& DAORegistry::getDAO('EditorSubmissionDAO');
foreach ($articleXML->editDecisions as $editDecisionXML) {
$editDecisions =& $editorSubmissionDAO->update('INSERT INTO edit_decisions (article_id, round, editor_id, decision, date_decided) values (?, ?, ?, ?, ?)', array($article->getId(), (string) $editDecisionXML->round, $this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $editDecisionXML->editorId), (string) $editDecisionXML->decision, (string) $editDecisionXML->dateDecided));
}
$publishedArticleDAO =& DAORegistry::getDAO('PublishedArticleDAO');
if (isset($articleXML->publishedArticle)) {
$publishedArticleXML = $articleXML->publishedArticle;
$publishedArticle = new PublishedArticle();
$publishedArticle->setId($article->getId());
$publishedArticle->setIssueId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ISSUE, (int) $publishedArticleXML->issueId));
$publishedArticle->setDatePublished((string) $publishedArticleXML->datePublished);
$publishedArticle->setSeq((int) $publishedArticleXML->seq);
$publishedArticle->setAccessStatus((int) $publishedArticleXML->accessStatus);
$publishedArticleDAO->insertPublishedArticle($publishedArticle);
}
$articleEventLogDAO =& DAORegistry::getDAO('ArticleEventLogDAO');
$eventLogsXML =& iterator_to_array($articleXML->eventLogs->eventLog);
$eventLogsXML = array();
foreach ($articleXML->eventLogs->eventLog as $eventLogXML) {
array_unshift($eventLogsXML, $eventLogXML);
}
foreach ($eventLogsXML as $eventLogXML) {
$eventLog = new ArticleEventLogEntry();
$eventLog->setAssocType(ASSOC_TYPE_ARTICLE);
$eventLog->setAssocId($article->getId());
$eventLog->setUserId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $eventLogXML->userId));
$eventLog->setDateLogged((string) $eventLogXML->dateLogged);
$eventLog->setIPAddress((string) $eventLogXML->IPAddress);
$eventLog->setEventType((int) $eventLogXML->eventType);
$eventLog->setMessage((string) $eventLogXML->message);
$eventLog->setIsTranslated((int) $eventLogXML->isTranslated);
$articleEventLogDAO->insertObject($eventLog);
$this->restoreDataObjectSettings($articleEventLogDAO, $eventLogXML->settings, 'event_log_settings', 'log_id', $eventLog->getId());
}
try {
$article->setSubmissionFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleXML->submissionFileId));
} catch (Exception $e) {
}
try {
$article->setRevisedFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleXML->revisedFileId));
} catch (Exception $e) {
}
try {
$article->setReviewFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleXML->reviewFileId));
} catch (Exception $e) {
}
try {
$article->setEditorFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleXML->editorFileId));
} catch (Exception $e) {
}
$articleDAO->updateArticle($article);
$this->nextElement();
}
}
$rev1->setReviewDate("08/09/2001");
// will fail: reviewed_by column required
$bk1->addReview($rev1);
$ret2 = $bk1->validate();
$failures2 = $bk1->getValidationFailures();
print "Making sure 6 validation messages were returned: ";
print boolTest(count($failures2) === 3);
print "Making sure correct columns failed: ";
print boolTest(array_keys($failures2) === array(AuthorPeer::LAST_NAME, BookPeer::TITLE, ReviewPeer::REVIEWED_BY));
$bk2 = new Book();
$bk2->setTitle("12345678901");
// passes
$auth2 = new Author();
$auth2->setLastName("Blah");
//passes
$auth2->setEmail("*****@*****.**");
//passes
$auth2->setAge(50);
//passes
$bk2->setAuthor($auth2);
$rev2 = new Review();
$rev2->setReviewedBy("Me!");
// passes
$rev2->setStatus("new");
// passes
$bk2->addReview($rev2);
$ret3 = $bk2->validate();
print "Making sure complex validation can pass: "******"Error doing validation tests: " . $e->__toString());
/**
* Save changes to paper.
* @return int the paper ID
*/
function execute()
{
$paperDao =& DAORegistry::getDAO('PaperDAO');
$authorDao =& DAORegistry::getDAO('AuthorDAO');
$paper =& $this->paper;
$conference =& Request::getConference();
$schedConf =& Request::getSchedConf();
$user =& Request::getUser();
// Update paper
$paper->setTitle($this->getData('title'), null);
// Localized
$reviewMode = $this->paper->getReviewMode();
if ($reviewMode != REVIEW_MODE_PRESENTATIONS_ALONE) {
$paper->setAbstract($this->getData('abstract'), null);
// Localized
}
$paper->setDiscipline($this->getData('discipline'), null);
// Localized
$paper->setSubjectClass($this->getData('subjectClass'), null);
// Localized
$paper->setSubject($this->getData('subject'), null);
// Localized
$paper->setCoverageGeo($this->getData('coverageGeo'), null);
// Localized
$paper->setCoverageChron($this->getData('coverageChron'), null);
// Localized
$paper->setCoverageSample($this->getData('coverageSample'), null);
// Localized
$paper->setType($this->getData('type'), null);
// Localized
$paper->setLanguage($this->getData('language'));
// Localized
$paper->setSponsor($this->getData('sponsor'), null);
// Localized
$paper->setCitations($this->getData('citations'));
// Update the submission progress if necessary.
if ($paper->getSubmissionProgress() <= $this->step) {
$paper->stampStatusModified();
// If we aren't about to collect the paper, the submission is complete
// (for now)
$reviewMode = $this->paper->getReviewMode();
if ($reviewMode == REVIEW_MODE_BOTH_SIMULTANEOUS || $reviewMode == REVIEW_MODE_PRESENTATIONS_ALONE) {
if (!$schedConf->getSetting('acceptSupplementaryReviewMaterials')) {
$paper->setSubmissionProgress($this->step + 2);
} else {
$paper->setSubmissionProgress($this->step + 1);
}
// The line below is necessary to ensure that
// the paper upload goes in with the correct
// stage number (i.e. paper).
$paper->setCurrentStage(REVIEW_STAGE_PRESENTATION);
} else {
$paper->setDateSubmitted(Core::getCurrentDate());
$paper->stampStatusModified();
$paper->setCurrentStage(REVIEW_STAGE_ABSTRACT);
$this->assignDirectors($paper);
if ($schedConf->getSetting('acceptSupplementaryReviewMaterials')) {
$paper->setSubmissionProgress($this->step + 2);
} else {
$paper->setSubmissionProgress(0);
$this->confirmSubmission($paper, $user, $schedConf, $conference, 'SUBMISSION_ACK');
}
}
}
// Update authors
$authors = $this->getData('authors');
for ($i = 0, $count = count($authors); $i < $count; $i++) {
if ($authors[$i]['authorId'] > 0) {
// Update an existing author
$author =& $paper->getAuthor($authors[$i]['authorId']);
$isExistingAuthor = true;
} else {
// Create a new author
$author = new Author();
$isExistingAuthor = false;
}
if ($author != null) {
$author->setFirstName($authors[$i]['firstName']);
$author->setMiddleName($authors[$i]['middleName']);
$author->setLastName($authors[$i]['lastName']);
$author->setAffiliation($authors[$i]['affiliation']);
$author->setCountry($authors[$i]['country']);
$author->setEmail($authors[$i]['email']);
$author->setUrl($authors[$i]['url']);
$author->setBiography($authors[$i]['biography'], null);
// Localized
$author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0);
$author->setSequence($authors[$i]['seq']);
if ($isExistingAuthor == false) {
$paper->addAuthor($author);
}
}
unset($author);
}
// Remove deleted authors
$deletedAuthors = explode(':', $this->getData('deletedAuthors'));
for ($i = 0, $count = count($deletedAuthors); $i < $count; $i++) {
$paper->removeAuthor($deletedAuthors[$i]);
}
// Save the paper
$paperDao->updatePaper($paper);
// Log the submission, even though it may not be "complete"
// at this step. This is important because we don't otherwise
// capture changes in review process.
import('paper.log.PaperLog');
import('paper.log.PaperEventLogEntry');
PaperLog::logEvent($this->paperId, PAPER_LOG_ABSTRACT_SUBMIT, LOG_TYPE_AUTHOR, $user->getId(), 'log.author.abstractSubmitted', array('submissionId' => $paper->getId(), 'authorName' => $user->getFullName()));
return $this->paperId;
}
function handleAuthorNode(&$conference, &$schedConf, &$authorNode, &$track, &$paper, &$errors)
{
$errors = array();
$conferenceSupportedLocales = array_keys($conference->getSupportedLocaleNames());
// => conference locales must be set up before
$conferencePrimaryLocale = $conference->getPrimaryLocale();
$author = new Author();
if ($node = $authorNode->getChildByName('firstname')) {
$author->setFirstName($node->getValue());
}
if ($node = $authorNode->getChildByName('middlename')) {
$author->setMiddleName($node->getValue());
}
if ($node = $authorNode->getChildByName('lastname')) {
$author->setLastName($node->getValue());
}
if ($node = $authorNode->getChildByName('affiliation')) {
$author->setAffiliation($node->getValue());
}
if ($node = $authorNode->getChildByName('country')) {
$author->setCountry($node->getValue());
}
if ($node = $authorNode->getChildByName('email')) {
$author->setEmail($node->getValue());
}
if ($node = $authorNode->getChildByName('url')) {
$author->setUrl($node->getValue());
}
for ($index = 0; $node = $authorNode->getChildByName('biography', $index); $index++) {
$locale = $node->getAttribute('locale');
if ($locale == '') {
$locale = $conferencePrimaryLocale;
} elseif (!in_array($locale, $conferenceSupportedLocales)) {
$errors[] = array('plugins.importexport.native.import.error.paperAuthorBiographyLocaleUnsupported', array('authorFullName' => $author->getFullName(), 'paperTitle' => $paper->getLocalizedTitle(), 'locale' => $locale));
return false;
}
$author->setBiography($node->getValue(), $locale);
}
$author->setPrimaryContact($authorNode->getAttribute('primary_contact') === 'true' ? 1 : 0);
$paper->addAuthor($author);
// instead of $author->setSequence($index+1);
return true;
}
public function testDoValidate_BasicValidatorObj()
{
$author = new Author();
$author->setFirstName("Malcolm");
// last name required, valid email format, age > 0
$author->setLastName("X");
$author->setEmail('malcolm@');
// fail
$res = $author->validate();
$this->assertFalse($res, "Expected validation to fail.");
$failures = $author->getValidationFailures();
$this->assertEquals(1, count($failures), "Expected 1 column to fail validation.");
$this->assertEquals(array(AuthorPeer::EMAIL), array_keys($failures), "Expected EMAIL to fail validation.");
$validator = $failures[AuthorPeer::EMAIL]->getValidator();
$this->assertTrue($validator instanceof MatchValidator, "Expected validator that failed to be MatchValidator");
}
function handleAuthorNode(&$journal, &$authorNode, &$issue, &$section, &$article, &$errors)
{
$errors = array();
$journalSupportedLocales = array_keys($journal->getSupportedLocaleNames());
// => journal locales must be set up before
$journalPrimaryLocale = $journal->getPrimaryLocale();
$author = new Author();
if ($node = $authorNode->getChildByName('firstname')) {
$author->setFirstName($node->getValue());
}
if ($node = $authorNode->getChildByName('middlename')) {
$author->setMiddleName($node->getValue());
}
if ($node = $authorNode->getChildByName('lastname')) {
$author->setLastName($node->getValue());
}
for ($index = 0; $node = $authorNode->getChildByName('affiliation', $index); $index++) {
$locale = $node->getAttribute('locale');
if ($locale == '') {
$locale = $journalPrimaryLocale;
} elseif (!in_array($locale, $journalSupportedLocales)) {
$errors[] = array('plugins.importexport.native.import.error.articleAuthorAffiliationLocaleUnsupported', array('authorFullName' => $author->getFullName(), 'articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale));
return false;
}
$author->setAffiliation($node->getValue(), $locale);
}
if ($node = $authorNode->getChildByName('country')) {
$author->setCountry($node->getValue());
}
if ($node = $authorNode->getChildByName('email')) {
$author->setEmail($node->getValue());
}
if ($node = $authorNode->getChildByName('url')) {
$author->setUrl($node->getValue());
}
for ($index = 0; $node = $authorNode->getChildByName('competing_interests', $index); $index++) {
$locale = $node->getAttribute('locale');
if ($locale == '') {
$locale = $journalPrimaryLocale;
} elseif (!in_array($locale, $journalSupportedLocales)) {
$errors[] = array('plugins.importexport.native.import.error.articleAuthorCompetingInterestsLocaleUnsupported', array('authorFullName' => $author->getFullName(), 'articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale));
return false;
}
$author->setCompetingInterests($node->getValue(), $locale);
}
for ($index = 0; $node = $authorNode->getChildByName('biography', $index); $index++) {
$locale = $node->getAttribute('locale');
if ($locale == '') {
$locale = $journalPrimaryLocale;
} elseif (!in_array($locale, $journalSupportedLocales)) {
$errors[] = array('plugins.importexport.native.import.error.articleAuthorBiographyLocaleUnsupported', array('authorFullName' => $author->getFullName(), 'articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale));
return false;
}
$author->setBiography($node->getValue(), $locale);
}
$author->setPrimaryContact($authorNode->getAttribute('primary_contact') === 'true' ? 1 : 0);
$article->addAuthor($author);
// instead of $author->setSequence($index+1);
return true;
}
/**
* Save changes to article.
* @param $request Request
* @return int the article ID
*/
function execute(&$request)
{
$articleDao =& DAORegistry::getDAO('ArticleDAO');
$article =& $this->article;
$articleSitesData = $this->getData('articleSites');
$articleSites = $article->getArticleSites();
import('classes.journal.TrialSite');
import('classes.article.ArticleSite');
// Remove deleted article sites
foreach ($articleSites as $articleSite) {
$isPresent = false;
foreach ($articleSitesData as $articleSiteData) {
if (!empty($articleSiteData['id'])) {
if ($articleSite->getId() == $articleSiteData['id']) {
$isPresent = true;
}
}
}
if (!$isPresent) {
$article->removeArticleSite($articleSite->getId());
}
unset($isPresent);
unset($articleSite);
}
// Update / Insters article sites
foreach ($articleSitesData as $articleSiteData) {
if (isset($articleSiteData['id'])) {
$articleSite = $article->getArticleSite($articleSiteData['id']);
$isExistingSite = true;
} else {
$articleSite = new ArticleSite();
$isExistingSite = false;
}
$articleSite->setArticleId($article->getId());
if ($articleSiteData['siteSelect'] == "OTHER") {
$trialSite = new TrialSite();
$trialSite->setName($articleSiteData['siteName']);
$trialSite->setAddress($articleSiteData['siteAddress']);
$trialSite->setCity($articleSiteData['siteCity']);
$trialSite->setRegion($articleSiteData['siteRegion']);
$trialSite->setLicensure($articleSiteData['siteLicensure']);
$trialSite->setAccreditation($articleSiteData['siteAccreditation']);
$articleSite->setSiteId($this->trialSiteDao->insertTrialSite($trialSite));
} else {
$articleSite->setSiteId($articleSiteData['siteSelect']);
}
$articleSite->setAuthority($articleSiteData['authority']);
$articleSite->setERCId($articleSiteData['erc']);
$articleSite->setPrimaryPhone($articleSiteData['primaryPhone']);
$articleSite->setSecondaryPhone($articleSiteData['secondaryPhone']);
$articleSite->setFax($articleSiteData['fax']);
$articleSite->setEmail($articleSiteData['email']);
$articleSite->setSubjectsNumber($articleSiteData['subjectsNumber']);
$investigatorsData = $articleSiteData['investigators'];
$investigators = $articleSite->getInvestigators();
// Remove deleted investigators
foreach ($investigators as $investigator) {
$isPresent = false;
foreach ($investigatorsData as $investigatorData) {
if (!empty($investigatorData['id'])) {
if ($investigator->getId() == $investigatorData['id']) {
$isPresent = true;
}
}
}
if (!$isPresent) {
$articleSite->removeInvestigator($investigator->getId());
}
unset($isPresent);
unset($investigator);
}
// Update / Insert Investigators
$investigatorIterator = 1;
foreach ($investigatorsData as $investigatorData) {
if (isset($investigatorData['id'])) {
$investigator = $articleSite->getInvestigator($investigatorData['id']);
} else {
$investigator = new Author();
}
if ($isExistingSite) {
$investigator->setSiteId($articleSite->getId());
}
if ($investigatorIterator == 1) {
$investigator->setPrimaryContact(1);
}
$investigator->setSequence($investigatorIterator);
$investigator->setFirstName($investigatorData['firstName']);
$investigator->setLastName($investigatorData['lastName']);
$investigator->setExpertise($investigatorData['expertise']);
$investigator->setPrimaryPhoneNumber($investigatorData['iPrimaryPhone']);
$investigator->setSecondaryPhoneNumber($investigatorData['iSecondaryPhone']);
$investigator->setFaxNumber($investigatorData['iFax']);
$investigator->setEmail($investigatorData['iEmail']);
$articleSite->addInvestigator($investigator);
$investigatorIterator++;
}
$article->addArticleSite($articleSite);
}
//update step
if ($article->getSubmissionProgress() <= $this->step) {
$article->stampStatusModified();
$article->setSubmissionProgress($this->step + 1);
} elseif ($article->getSubmissionProgress() == 9) {
$article->setSubmissionProgress(8);
}
parent::execute();
// Save the article
$articleDao->updateArticle($article);
return $this->articleId;
}
/**
* Save changes to article.
* @param $request PKPRequest
* @return int the article ID
*/
function execute(&$request)
{
$articleDao =& DAORegistry::getDAO('ArticleDAO');
$article =& $this->article;
// Retrieve the previous citation list for comparison.
$previousRawCitationList = $article->getCitations();
///////////////////////////////////////////
////////////// Update Authors /////////////
///////////////////////////////////////////
$authors = $this->getData('authors');
for ($i = 0, $count = count($authors); $i < $count; $i++) {
if ($authors[$i]['authorId'] > 0) {
// Update an existing author
$author =& $article->getAuthor($authors[$i]['authorId']);
$isExistingAuthor = true;
} else {
// Create a new author
$author = new Author();
$isExistingAuthor = false;
}
if ($author != null) {
$author->setSubmissionId($article->getId());
if (isset($authors[$i]['firstName'])) {
$author->setFirstName($authors[$i]['firstName']);
}
if (isset($authors[$i]['middleName'])) {
$author->setMiddleName($authors[$i]['middleName']);
}
if (isset($authors[$i]['lastName'])) {
$author->setLastName($authors[$i]['lastName']);
}
if (isset($authors[$i]['affiliation'])) {
$author->setAffiliation($authors[$i]['affiliation']);
}
if (isset($authors[$i]['phone'])) {
$author->setPhoneNumber($authors[$i]['phone']);
}
if (isset($authors[$i]['email'])) {
$author->setEmail($authors[$i]['email']);
}
$author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0);
$author->setSequence($authors[$i]['seq']);
if ($isExistingAuthor == false) {
$article->addAuthor($author);
}
}
unset($author);
}
// Remove deleted authors
$deletedAuthors = explode(':', $this->getData('deletedAuthors'));
for ($i = 0, $count = count($deletedAuthors); $i < $count; $i++) {
$article->removeAuthor($deletedAuthors[$i]);
}
///////////////////////////////////////////
//////////// Update Abstract(s) ///////////
///////////////////////////////////////////
import('classes.article.ProposalAbstract');
$journal = Request::getJournal();
$abstracts = $this->getData('abstracts');
foreach ($journal->getSupportedLocaleNames() as $localeKey => $localeValue) {
if ($abstracts[$localeKey]['abstractId'] > 0) {
$abstract = $article->getAbstractByLocale($localeKey);
$isExistingAbstract = true;
} else {
$abstract = new ProposalAbstract();
$isExistingAbstract = false;
}
if ($abstract != null) {
$abstract->setArticleId($article->getId());
$abstract->setLocale($localeKey);
$abstract->setScientificTitle($abstracts[$localeKey]['scientificTitle']);
$abstract->setPublicTitle($abstracts[$localeKey]['publicTitle']);
$abstract->setBackground($abstracts[$localeKey]['background']);
$abstract->setObjectives($abstracts[$localeKey]['objectives']);
$abstract->setStudyMethods($abstracts[$localeKey]['studyMethods']);
$abstract->setExpectedOutcomes($abstracts[$localeKey]['expectedOutcomes']);
$abstract->setKeywords($abstracts[$localeKey]['keywords']);
if ($isExistingAbstract == false) {
$article->addAbstract($abstract);
}
}
unset($abstract);
}
///////////////////////////////////////////
///////// Update Proposal Details /////////
///////////////////////////////////////////
$proposalDetailsData = $this->getData('proposalDetails');
import('classes.article.ProposalDetails');
$proposalDetails = new ProposalDetails();
$institutionDao =& DAORegistry::getDAO('InstitutionDAO');
import('classes.journal.Institution');
$proposalDetails->setArticleId($article->getId());
$proposalDetails->setStudentResearch($proposalDetailsData['studentInitiatedResearch']);
$proposalDetails->setStartDate($proposalDetailsData['startDate']);
$proposalDetails->setEndDate($proposalDetailsData['endDate']);
if ($proposalDetailsData['keyImplInstitution'] == "OTHER") {
$institution = new Institution();
$institution->setInstitutionName($proposalDetailsData['otherInstitutionName']);
$institution->setInstitutionAcronym($proposalDetailsData['otherInstitutionAcronym']);
$institution->setInstitutionType($proposalDetailsData['otherInstitutionType']);
$institution->setInstitutionInternational($proposalDetailsData['international']);
if ($proposalDetailsData['international'] == INSTITUTION_NATIONAL) {
$institution->setInstitutionLocation($proposalDetailsData['locationCountry']);
} elseif ($proposalDetailsData['international'] == INSTITUTION_INTERNATIONAL) {
$institution->setInstitutionLocation($proposalDetailsData['locationInternational']);
}
$institutionId = $institutionDao->insertInstitution($institution);
$proposalDetails->setKeyImplInstitution($institutionId);
unset($institution);
} else {
$proposalDetails->setKeyImplInstitution($proposalDetailsData['keyImplInstitution']);
}
$proposalDetails->setMultiCountryResearch($proposalDetailsData['multiCountryResearch']);
if ($proposalDetailsData['multiCountryResearch'] == PROPOSAL_DETAIL_YES) {
$countriesArray = $proposalDetailsData['countries'];
$countries = implode(",", $countriesArray);
$proposalDetails->setCountries($countries);
}
$proposalDetails->setNationwide($proposalDetailsData['nationwide']);
if ($proposalDetailsData['nationwide'] != PROPOSAL_DETAIL_YES) {
$geoAreasArray = $proposalDetailsData['geoAreas'];
$proposalDetails->setGeoAreasFromArray($geoAreasArray);
}
$researchDomainsArray = $proposalDetailsData['researchDomains'];
$proposalDetails->setResearchDomainsFromArray($researchDomainsArray);
$researchFieldsArray = $proposalDetailsData['researchFields'];
foreach ($researchFieldsArray as $i => $field) {
if ($field == "OTHER") {
$otherField = $proposalDetailsData['otherResearchField'];
if ($otherField != "") {
$researchFieldsArray[$i] = "Other (" . $otherField . ")";
}
}
}
$proposalDetails->setResearchFieldsFromArray($researchFieldsArray);
$proposalDetails->setHumanSubjects($proposalDetailsData['withHumanSubjects']);
if ($proposalDetailsData['withHumanSubjects'] == PROPOSAL_DETAIL_YES) {
$proposalTypesArray = $proposalDetailsData['proposalTypes'];
foreach ($proposalTypesArray as $i => $type) {
if ($type == "OTHER") {
$otherType = $proposalDetailsData['otherProposalType'];
if ($otherType != "") {
$proposalTypesArray[$i] = "Other (" . $otherType . ")";
}
}
}
$proposalDetails->setProposalTypesFromArray($proposalTypesArray);
}
$proposalDetails->setDataCollection($proposalDetailsData['dataCollection']);
if ($proposalDetailsData['reviewedByOtherErc'] == PROPOSAL_DETAIL_YES) {
$proposalDetails->setCommitteeReviewed($proposalDetailsData['otherErcDecision']);
} else {
$proposalDetails->setCommitteeReviewed(PROPOSAL_DETAIL_NO);
}
// Update or insert student research
import('classes.article.StudentResearch');
$studentResearchInfo = new StudentResearch();
$studentResearchInfo->setArticleId($article->getId());
$studentResearchData = $this->getData('studentResearch');
$studentResearchInfo->setInstitution($studentResearchData['studentInstitution']);
$studentResearchInfo->setDegree($studentResearchData['academicDegree']);
$studentResearchInfo->setSupervisorName($studentResearchData['supervisorName']);
$studentResearchInfo->setSupervisorEmail($studentResearchData['supervisorEmail']);
$proposalDetails->setStudentResearchInfo($studentResearchInfo);
$article->setProposalDetails($proposalDetails);
///////////////////////////////////////////
//////// Update Sources of Monetary ///////
///////////////////////////////////////////
$sources = $article->getSources();
$sourcesData = $this->getData('sources');
//Remove sources
foreach ($sources as $source) {
$isPresent = false;
foreach ($sourcesData as $sourceData) {
if (!empty($sourceData['sourceId'])) {
if ($source->getSourceId() == $sourceData['sourceId']) {
$isPresent = true;
}
}
}
if (!$isPresent) {
$article->removeSource($source->getSourceId());
}
unset($source);
}
for ($i = 0, $count = count($sourcesData); $i < $count; $i++) {
if (!empty($sourcesData[$i]['sourceId'])) {
// Update an existing source
$source =& $article->getSource($sourcesData[$i]['sourceId']);
$isExistingSource = true;
} else {
// Create a new source
$source = new ProposalSource();
$isExistingSource = false;
}
if ($source != null) {
$source->setArticleId($article->getId());
if ($sourcesData[$i]['institution'] == "OTHER") {
$institution = new Institution();
$institution->setInstitutionName($sourcesData[$i]['otherInstitutionName']);
$institution->setInstitutionAcronym($sourcesData[$i]['otherInstitutionAcronym']);
$institution->setInstitutionType($sourcesData[$i]['otherInstitutionType']);
$institution->setInstitutionInternational($sourcesData[$i]['international']);
if ($sourcesData[$i]['international'] == INSTITUTION_NATIONAL) {
$institution->setInstitutionLocation($sourcesData[$i]['locationCountry']);
} elseif ($proposalDetailsData['international'] == INSTITUTION_INTERNATIONAL) {
$institution->setInstitutionLocation($sourcesData[$i]['locationInternational']);
}
$institutionId = $institutionDao->insertInstitution($institution);
$source->setInstitutionId($institutionId);
unset($institution);
} elseif ($sourcesData[$i]['institution'] == "KII") {
$source->setInstitutionId($proposalDetails->getKeyImplInstitution());
} else {
$source->setInstitutionId($sourcesData[$i]['institution']);
}
$source->setSourceAmount($sourcesData[$i]['amount']);
if (!$isExistingSource) {
$article->addSource($source);
}
}
unset($source);
}
///////////////////////////////////////////
///////////// Risk Assessment /////////////
///////////////////////////////////////////
import('classes.article.RiskAssessment');
$riskAssessment = new RiskAssessment();
$riskAssessmentData = $this->getData('riskAssessment');
$riskAssessment->setArticleId($article->getId());
$riskAssessment->setIdentityRevealed($riskAssessmentData['identityRevealed']);
$riskAssessment->setUnableToConsent($riskAssessmentData['unableToConsent']);
$riskAssessment->setUnder18($riskAssessmentData['under18']);
$riskAssessment->setDependentRelationship($riskAssessmentData['dependentRelationship']);
$riskAssessment->setEthnicMinority($riskAssessmentData['ethnicMinority']);
$riskAssessment->setImpairment($riskAssessmentData['impairment']);
$riskAssessment->setPregnant($riskAssessmentData['pregnant']);
$riskAssessment->setNewTreatment($riskAssessmentData['newTreatment']);
$riskAssessment->setBioSamples($riskAssessmentData['bioSamples']);
$riskAssessment->setExportHumanTissue($riskAssessmentData['exportHumanTissue']);
$riskAssessment->setExportReason($riskAssessmentData['exportReason']);
$riskAssessment->setRadiation($riskAssessmentData['radiation']);
$riskAssessment->setDistress($riskAssessmentData['distress']);
$riskAssessment->setInducements($riskAssessmentData['inducements']);
$riskAssessment->setSensitiveInfo($riskAssessmentData['sensitiveInfo']);
$riskAssessment->setReproTechnology($riskAssessmentData['reproTechnology']);
$riskAssessment->setGenetic($riskAssessmentData['genetic']);
$riskAssessment->setStemCell($riskAssessmentData['stemCell']);
$riskAssessment->setBiosafety($riskAssessmentData['biosafety']);
$riskAssessment->setRiskLevel($riskAssessmentData['riskLevel']);
$riskAssessment->setListRisks($riskAssessmentData['listRisks']);
$riskAssessment->setHowRisksMinimized($riskAssessmentData['howRisksMinimized']);
$riskAssessment->setRisksToTeam(isset($riskAssessmentData['risksToTeam']) ? 1 : 0);
$riskAssessment->setRisksToSubjects(isset($riskAssessmentData['risksToSubjects']) ? 1 : 0);
$riskAssessment->setRisksToCommunity(isset($riskAssessmentData['risksToCommunity']) ? 1 : 0);
$riskAssessment->setBenefitsToParticipants(isset($riskAssessmentData['benefitsToParticipants']) ? 1 : 0);
$riskAssessment->setKnowledgeOnCondition(isset($riskAssessmentData['knowledgeOnCondition']) ? 1 : 0);
$riskAssessment->setKnowledgeOnDisease(isset($riskAssessmentData['knowledgeOnDisease']) ? 1 : 0);
$riskAssessment->setMultiInstitutions($riskAssessmentData['multiInstitutions']);
$riskAssessment->setConflictOfInterest($riskAssessmentData['conflictOfInterest']);
$article->setRiskAssessment($riskAssessment);
parent::execute();
// Save the article
$articleDao->updateArticle($article);
// Update references list if it changed.
$citationDao =& DAORegistry::getDAO('CitationDAO');
$rawCitationList = $article->getCitations();
if ($previousRawCitationList != $rawCitationList) {
$citationDao->importCitations($request, ASSOC_TYPE_ARTICLE, $article->getId(), $rawCitationList);
}
}
/**
* Save changes to article.
* @return int the article ID
*/
function execute()
{
$articleDao =& DAORegistry::getDAO('ArticleDAO');
if (isset($this->article)) {
// Update existing article
$this->article->setSectionId($this->getData('sectionId'));
$this->article->setLocale($this->getData('locale'));
$this->article->setCommentsToEditor($this->getData('commentsToEditor'));
if ($this->article->getSubmissionProgress() <= $this->step) {
$this->article->stampStatusModified();
$this->article->setSubmissionProgress($this->step + 1);
}
$articleDao->updateArticle($this->article);
} else {
// Insert new article
$journal =& $this->request->getJournal();
$user =& $this->request->getUser();
$this->article = new Article();
$this->article->setLocale($this->getData('locale'));
$this->article->setUserId($user->getId());
$this->article->setJournalId($journal->getId());
$this->article->setSectionId($this->getData('sectionId'));
$this->article->stampStatusModified();
$this->article->setSubmissionProgress($this->step + 1);
$this->article->setLanguage(String::substr($this->article->getLocale(), 0, 2));
$this->article->setCommentsToEditor($this->getData('commentsToEditor'));
$articleDao->insertArticle($this->article);
$this->articleId = $this->article->getId();
// Set user to initial author
$authorDao =& DAORegistry::getDAO('AuthorDAO');
/* @var $authorDao AuthorDAO */
$user =& $this->request->getUser();
$author = new Author();
$author->setSubmissionId($this->articleId);
$author->setFirstName($user->getFirstName());
$author->setMiddleName($user->getMiddleName());
$author->setLastName($user->getLastName());
$author->setAffiliation($user->getAffiliation(null), null);
$author->setCountry($user->getCountry());
$author->setEmail($user->getEmail());
$author->setData('orcid', $user->getData('orcid'));
$author->setUrl($user->getUrl());
$author->setBiography($user->getBiography(null), null);
$author->setPrimaryContact(1);
$authorDao->insertAuthor($author);
}
return $this->articleId;
}
public function testScenarioUsingQuery()
{
// Add publisher records
// ---------------------
try {
$scholastic = new Publisher();
$scholastic->setName("Scholastic");
// do not save, will do later to test cascade
$morrow = new Publisher();
$morrow->setName("William Morrow");
$morrow->save();
$morrow_id = $morrow->getId();
$penguin = new Publisher();
$penguin->setName("Penguin");
$penguin->save();
$penguin_id = $penguin->getId();
$vintage = new Publisher();
$vintage->setName("Vintage");
$vintage->save();
$vintage_id = $vintage->getId();
$this->assertTrue(true, 'Save Publisher records');
} catch (Exception $e) {
$this->fail('Save publisher records');
}
// Add author records
// ------------------
try {
$rowling = new Author();
$rowling->setFirstName("J.K.");
$rowling->setLastName("Rowling");
// do not save, will do later to test cascade
$stephenson = new Author();
$stephenson->setFirstName("Neal");
$stephenson->setLastName("Stephenson");
$stephenson->save();
$stephenson_id = $stephenson->getId();
$byron = new Author();
$byron->setFirstName("George");
$byron->setLastName("Byron");
$byron->save();
$byron_id = $byron->getId();
$grass = new Author();
$grass->setFirstName("Gunter");
$grass->setLastName("Grass");
$grass->save();
$grass_id = $grass->getId();
$this->assertTrue(true, 'Save Author records');
} catch (Exception $e) {
$this->fail('Save Author records');
}
// Add book records
// ----------------
try {
$phoenix = new Book();
$phoenix->setTitle("Harry Potter and the Order of the Phoenix");
$phoenix->setISBN("043935806X");
$phoenix->setAuthor($rowling);
$phoenix->setPublisher($scholastic);
$phoenix->save();
$phoenix_id = $phoenix->getId();
$this->assertFalse($rowling->isNew(), 'saving book also saves related author');
$this->assertFalse($scholastic->isNew(), 'saving book also saves related publisher');
$qs = new Book();
$qs->setISBN("0380977427");
$qs->setTitle("Quicksilver");
$qs->setAuthor($stephenson);
$qs->setPublisher($morrow);
$qs->save();
$qs_id = $qs->getId();
$dj = new Book();
$dj->setISBN("0140422161");
$dj->setTitle("Don Juan");
$dj->setAuthor($byron);
$dj->setPublisher($penguin);
$dj->save();
$dj_id = $qs->getId();
$td = new Book();
$td->setISBN("067972575X");
$td->setTitle("The Tin Drum");
$td->setAuthor($grass);
$td->setPublisher($vintage);
$td->save();
$td_id = $td->getId();
$this->assertTrue(true, 'Save Book records');
} catch (Exception $e) {
$this->fail('Save Author records');
}
// Add review records
// ------------------
try {
$r1 = new Review();
$r1->setBook($phoenix);
$r1->setReviewedBy("Washington Post");
$r1->setRecommended(true);
$r1->setReviewDate(time());
$r1->save();
$r1_id = $r1->getId();
$r2 = new Review();
$r2->setBook($phoenix);
$r2->setReviewedBy("New York Times");
$r2->setRecommended(false);
$r2->setReviewDate(time());
$r2->save();
$r2_id = $r2->getId();
$this->assertTrue(true, 'Save Review records');
} catch (Exception $e) {
$this->fail('Save Review records');
}
// Perform a "complex" search
// --------------------------
$results = BookQuery::create()->filterByTitle('Harry%')->find();
$this->assertEquals(1, count($results));
$results = BookQuery::create()->where('Book.ISBN IN ?', array("0380977427", "0140422161"))->find();
$this->assertEquals(2, count($results));
// Perform a "limit" search
// ------------------------
$results = BookQuery::create()->limit(2)->offset(1)->orderByTitle()->find();
$this->assertEquals(2, count($results));
// we ordered on book title, so we expect to get
$this->assertEquals("Harry Potter and the Order of the Phoenix", $results[0]->getTitle());
$this->assertEquals("Quicksilver", $results[1]->getTitle());
// Perform a lookup & update!
// --------------------------
// Updating just-created book title
// First finding book by PK (=$qs_id) ....
$qs_lookup = BookQuery::create()->findPk($qs_id);
$this->assertNotNull($qs_lookup, 'just-created book can be found by pk');
$new_title = "Quicksilver (" . crc32(uniqid(rand())) . ")";
// Attempting to update found object
$qs_lookup->setTitle($new_title);
$qs_lookup->save();
// Making sure object was correctly updated: ";
$qs_lookup2 = BookQuery::create()->findPk($qs_id);
$this->assertEquals($new_title, $qs_lookup2->getTitle());
// Test some basic DATE / TIME stuff
// ---------------------------------
// that's the control timestamp.
$control = strtotime('2004-02-29 00:00:00');
// should be two in the db
$r = ReviewQuery::create()->findOne();
$r_id = $r->getId();
$r->setReviewDate($control);
$r->save();
$r2 = ReviewQuery::create()->findPk($r_id);
$this->assertEquals(new Datetime('2004-02-29 00:00:00'), $r2->getReviewDate(null), 'ability to fetch DateTime');
$this->assertEquals($control, $r2->getReviewDate('U'), 'ability to fetch native unix timestamp');
$this->assertEquals('2-29-2004', $r2->getReviewDate('n-j-Y'), 'ability to use date() formatter');
// Handle BLOB/CLOB Columns
// ------------------------
$blob_path = dirname(__FILE__) . '/../../etc/lob/tin_drum.gif';
$blob2_path = dirname(__FILE__) . '/../../etc/lob/propel.gif';
$clob_path = dirname(__FILE__) . '/../../etc/lob/tin_drum.txt';
$m1 = new Media();
$m1->setBook($phoenix);
$m1->setCoverImage(file_get_contents($blob_path));
$m1->setExcerpt(file_get_contents($clob_path));
$m1->save();
$m1_id = $m1->getId();
$m1_lookup = MediaQuery::create()->findPk($m1_id);
$this->assertNotNull($m1_lookup, 'Can find just-created media item');
$this->assertEquals(md5(file_get_contents($blob_path)), md5(stream_get_contents($m1_lookup->getCoverImage())), 'BLOB was correctly updated');
$this->assertEquals(file_get_contents($clob_path), (string) $m1_lookup->getExcerpt(), 'CLOB was correctly updated');
// now update the BLOB column and save it & check the results
$m1_lookup->setCoverImage(file_get_contents($blob2_path));
$m1_lookup->save();
$m2_lookup = MediaQuery::create()->findPk($m1_id);
$this->assertNotNull($m2_lookup, 'Can find just-created media item');
$this->assertEquals(md5(file_get_contents($blob2_path)), md5(stream_get_contents($m2_lookup->getCoverImage())), 'BLOB was correctly overwritten');
// Test Validators
// ---------------
require_once 'tools/helpers/bookstore/validator/ISBNValidator.php';
$bk1 = new Book();
$bk1->setTitle("12345");
// min length is 10
$ret = $bk1->validate();
$this->assertFalse($ret, 'validation failed');
$failures = $bk1->getValidationFailures();
$this->assertEquals(1, count($failures), '1 validation message was returned');
$el = array_shift($failures);
$this->assertContains("must be more than", $el->getMessage(), 'Expected validation message was returned');
$bk2 = new Book();
$bk2->setTitle("Don Juan");
$ret = $bk2->validate();
$this->assertFalse($ret, 'validation failed');
$failures = $bk2->getValidationFailures();
$this->assertEquals(1, count($failures), '1 validation message was returned');
$el = array_shift($failures);
$this->assertContains("Book title already in database.", $el->getMessage(), 'Expected validation message was returned');
//Now trying some more complex validation.
$auth1 = new Author();
$auth1->setFirstName("Hans");
// last name required; will fail
$bk1->setAuthor($auth1);
$rev1 = new Review();
$rev1->setReviewDate("08/09/2001");
// will fail: reviewed_by column required
$bk1->addReview($rev1);
$ret2 = $bk1->validate();
$this->assertFalse($ret2, 'validation failed');
$failures2 = $bk1->getValidationFailures();
$this->assertEquals(3, count($failures2), '3 validation messages were returned');
$expectedKeys = array(AuthorPeer::LAST_NAME, BookPeer::TITLE, ReviewPeer::REVIEWED_BY);
$this->assertEquals($expectedKeys, array_keys($failures2), 'correct columns failed');
$bk2 = new Book();
$bk2->setTitle("12345678901");
// passes
$auth2 = new Author();
$auth2->setLastName("Blah");
//passes
$auth2->setEmail("*****@*****.**");
//passes
$auth2->setAge(50);
//passes
$bk2->setAuthor($auth2);
$rev2 = new Review();
$rev2->setReviewedBy("Me!");
// passes
$rev2->setStatus("new");
// passes
$bk2->addReview($rev2);
$ret3 = $bk2->validate();
$this->assertTrue($ret3, 'complex validation can pass');
// Testing doCount() functionality
// -------------------------------
// old way
$c = new Criteria();
$records = BookPeer::doSelect($c);
$count = BookPeer::doCount($c);
$this->assertEquals($count, count($records), 'correct number of results');
// new way
$count = BookQuery::create()->count();
$this->assertEquals($count, count($records), 'correct number of results');
// Test many-to-many relationships
// ---------------
// init book club list 1 with 2 books
$blc1 = new BookClubList();
$blc1->setGroupLeader("Crazyleggs");
$blc1->setTheme("Happiness");
$brel1 = new BookListRel();
$brel1->setBook($phoenix);
$brel2 = new BookListRel();
$brel2->setBook($dj);
$blc1->addBookListRel($brel1);
$blc1->addBookListRel($brel2);
$blc1->save();
$this->assertNotNull($blc1->getId(), 'BookClubList 1 was saved');
// init book club list 2 with 1 book
$blc2 = new BookClubList();
$blc2->setGroupLeader("John Foo");
$blc2->setTheme("Default");
$brel3 = new BookListRel();
$brel3->setBook($phoenix);
$blc2->addBookListRel($brel3);
$blc2->save();
$this->assertNotNull($blc2->getId(), 'BookClubList 2 was saved');
// re-fetch books and lists from db to be sure that nothing is cached
$crit = new Criteria();
$crit->add(BookPeer::ID, $phoenix->getId());
$phoenix = BookPeer::doSelectOne($crit);
$this->assertNotNull($phoenix, "book 'phoenix' has been re-fetched from db");
$crit = new Criteria();
$crit->add(BookClubListPeer::ID, $blc1->getId());
$blc1 = BookClubListPeer::doSelectOne($crit);
$this->assertNotNull($blc1, 'BookClubList 1 has been re-fetched from db');
$crit = new Criteria();
$crit->add(BookClubListPeer::ID, $blc2->getId());
$blc2 = BookClubListPeer::doSelectOne($crit);
$this->assertNotNull($blc2, 'BookClubList 2 has been re-fetched from db');
$relCount = $phoenix->countBookListRels();
$this->assertEquals(2, $relCount, "book 'phoenix' has 2 BookListRels");
$relCount = $blc1->countBookListRels();
$this->assertEquals(2, $relCount, 'BookClubList 1 has 2 BookListRels');
$relCount = $blc2->countBookListRels();
$this->assertEquals(1, $relCount, 'BookClubList 2 has 1 BookListRel');
// Cleanup (tests DELETE)
// ----------------------
// Removing books that were just created
// First finding book by PK (=$phoenix_id) ....
$hp = BookQuery::create()->findPk($phoenix_id);
$this->assertNotNull($hp, 'Could find just-created book');
// Attempting to delete [multi-table] by found pk
$c = new Criteria();
$c->add(BookPeer::ID, $hp->getId());
// The only way for cascading to work currently
// is to specify the author_id and publisher_id (i.e. the fkeys
// have to be in the criteria).
$c->add(AuthorPeer::ID, $hp->getAuthor()->getId());
$c->add(PublisherPeer::ID, $hp->getPublisher()->getId());
$c->setSingleRecord(true);
BookPeer::doDelete($c);
// Checking to make sure correct records were removed.
$this->assertEquals(3, AuthorPeer::doCount(new Criteria()), 'Correct records were removed from author table');
$this->assertEquals(3, PublisherPeer::doCount(new Criteria()), 'Correct records were removed from publisher table');
$this->assertEquals(3, BookPeer::doCount(new Criteria()), 'Correct records were removed from book table');
// Attempting to delete books by complex criteria
BookQuery::create()->filterByISBN("043935806X")->orWhere('Book.ISBN = ?', "0380977427")->orWhere('Book.ISBN = ?', "0140422161")->delete();
// Attempting to delete book [id = $td_id]
$td->delete();
// Attempting to delete authors
AuthorQuery::create()->filterById($stephenson_id)->delete();
AuthorQuery::create()->filterById($byron_id)->delete();
$grass->delete();
// Attempting to delete publishers
PublisherQuery::create()->filterById($morrow_id)->delete();
PublisherQuery::create()->filterById($penguin_id)->delete();
$vintage->delete();
// These have to be deleted manually also since we have onDelete
// set to SETNULL in the foreign keys in book. Is this correct?
$rowling->delete();
$scholastic->delete();
$blc1->delete();
$blc2->delete();
$this->assertEquals(array(), AuthorPeer::doSelect(new Criteria()), 'no records in [author] table');
$this->assertEquals(array(), PublisherPeer::doSelect(new Criteria()), 'no records in [publisher] table');
$this->assertEquals(array(), BookPeer::doSelect(new Criteria()), 'no records in [book] table');
$this->assertEquals(array(), ReviewPeer::doSelect(new Criteria()), 'no records in [review] table');
$this->assertEquals(array(), MediaPeer::doSelect(new Criteria()), 'no records in [media] table');
$this->assertEquals(array(), BookClubListPeer::doSelect(new Criteria()), 'no records in [book_club_list] table');
$this->assertEquals(array(), BookListRelPeer::doSelect(new Criteria()), 'no records in [book_x_list] table');
}
/**
* Save changes to submission.
* @return int the monograph ID
*/
function execute()
{
$monographDao =& DAORegistry::getDAO('MonographDAO');
if (isset($this->monograph)) {
// Update existing monograph
$this->monograph->setSeriesId($this->getData('seriesId'));
$this->monograph->setLocale($this->getData('locale'));
$this->monograph->setCommentsToEditor($this->getData('commentsToEditor'));
if ($this->monograph->getSubmissionProgress() <= $this->step) {
$this->monograph->stampStatusModified();
$this->monograph->setSubmissionProgress($this->step + 1);
}
$monographDao->updateMonograph($this->monograph);
} else {
$press =& Request::getPress();
$user =& Request::getUser();
// Get the session and the user group id currently used
$sessionMgr =& SessionManager::getManager();
$session =& $sessionMgr->getUserSession();
// Create new monograph
$this->monograph = new Monograph();
$this->monograph->setLocale($this->getData('locale'));
$this->monograph->setUserId($user->getId());
$this->monograph->setPressId($press->getId());
$this->monograph->setSeriesId($this->getData('seriesId'));
$this->monograph->stampStatusModified();
$this->monograph->setSubmissionProgress($this->step + 1);
$this->monograph->setLanguage(String::substr($this->monograph->getLocale(), 0, 2));
$this->monograph->setCommentsToEditor($this->getData('commentsToEditor'));
$this->monograph->setWorkType($this->getData('isEditedVolume') ? WORK_TYPE_EDITED_VOLUME : WORK_TYPE_AUTHORED_WORK);
$this->monograph->setCurrentStageId(WORKFLOW_STAGE_ID_SUBMISSION);
// Get a default user group id for an Author
$userGroupDao =& DAORegistry::getDAO('UserGroupDAO');
$defaultAuthorGroup =& $userGroupDao->getDefaultByRoleId($press->getId(), ROLE_ID_AUTHOR);
// Set user to initial author
$authorDao =& DAORegistry::getDAO('AuthorDAO');
$user =& Request::getUser();
$author = new Author();
$author->setFirstName($user->getFirstName());
$author->setMiddleName($user->getMiddleName());
$author->setLastName($user->getLastName());
$author->setAffiliation($user->getAffiliation(null), null);
$author->setCountry($user->getCountry());
$author->setEmail($user->getEmail());
$author->setUrl($user->getUrl());
$author->setUserGroupId($defaultAuthorGroup->getId());
$author->setBiography($user->getBiography(null), null);
$author->setPrimaryContact(1);
$monographDao->insertMonograph($this->monograph);
$this->monographId = $this->monograph->getId();
$author->setSubmissionId($this->monographId);
$authorDao->insertAuthor($author);
}
return $this->monographId;
}
