Exemplo n.º 1
0
 /**
  * Save changes to article.
  * @param $request PKPRequest
  * @return int the article ID
  */
 function execute(&$request)
 {
     $articleDao =& DAORegistry::getDAO('ArticleDAO');
     $authorDao =& DAORegistry::getDAO('AuthorDAO');
     $sectionDao =& DAORegistry::getDAO('SectionDAO');
     $citationDao =& DAORegistry::getDAO('CitationDAO');
     /* @var $citationDao CitationDAO */
     $article =& $this->article;
     // Retrieve the previous citation list for comparison.
     $previousRawCitationList = $article->getCitations();
     // Update article
     $article->setTitle($this->getData('title'), null);
     // Localized
     $section =& $sectionDao->getSection($article->getSectionId());
     $article->setAbstract($this->getData('abstract'), null);
     // Localized
     import('classes.file.PublicFileManager');
     $publicFileManager = new PublicFileManager();
     if ($publicFileManager->uploadedFileExists(COVER_PAGE_IMAGE_NAME)) {
         $journal = Request::getJournal();
         $originalFileName = $publicFileManager->getUploadedFileName(COVER_PAGE_IMAGE_NAME);
         $type = $publicFileManager->getUploadedFileType(COVER_PAGE_IMAGE_NAME);
         $newFileName = 'cover_article_' . $this->article->getId() . '_' . $this->getFormLocale() . $publicFileManager->getImageExtension($type);
         $publicFileManager->uploadJournalFile($journal->getId(), COVER_PAGE_IMAGE_NAME, $newFileName);
         $article->setOriginalFileName($publicFileManager->truncateFileName($originalFileName, 127), $this->getFormLocale());
         $article->setFileName($newFileName, $this->getFormLocale());
         // Store the image dimensions.
         list($width, $height) = getimagesize($publicFileManager->getJournalFilesPath($journal->getId()) . '/' . $newFileName);
         $article->setWidth($width, $this->getFormLocale());
         $article->setHeight($height, $this->getFormLocale());
     }
     $article->setCoverPageAltText($this->getData('coverPageAltText'), null);
     // Localized
     $showCoverPage = array_map(create_function('$arrayElement', 'return (int)$arrayElement;'), (array) $this->getData('showCoverPage'));
     foreach (array_keys($this->getData('coverPageAltText')) as $locale) {
         if (!array_key_exists($locale, $showCoverPage)) {
             $showCoverPage[$locale] = 0;
         }
     }
     $article->setShowCoverPage($showCoverPage, null);
     // Localized
     $hideCoverPageToc = array_map(create_function('$arrayElement', 'return (int)$arrayElement;'), (array) $this->getData('hideCoverPageToc'));
     foreach (array_keys($this->getData('coverPageAltText')) as $locale) {
         if (!array_key_exists($locale, $hideCoverPageToc)) {
             $hideCoverPageToc[$locale] = 0;
         }
     }
     $article->setHideCoverPageToc($hideCoverPageToc, null);
     // Localized
     $hideCoverPageAbstract = array_map(create_function('$arrayElement', 'return (int)$arrayElement;'), (array) $this->getData('hideCoverPageAbstract'));
     foreach (array_keys($this->getData('coverPageAltText')) as $locale) {
         if (!array_key_exists($locale, $hideCoverPageAbstract)) {
             $hideCoverPageAbstract[$locale] = 0;
         }
     }
     $article->setHideCoverPageAbstract($hideCoverPageAbstract, null);
     // Localized
     $article->setDiscipline($this->getData('discipline'), null);
     // Localized
     $article->setSubjectClass($this->getData('subjectClass'), null);
     // Localized
     $article->setSubject($this->getData('subject'), null);
     // Localized
     $article->setCoverageGeo($this->getData('coverageGeo'), null);
     // Localized
     $article->setCoverageChron($this->getData('coverageChron'), null);
     // Localized
     $article->setCoverageSample($this->getData('coverageSample'), null);
     // Localized
     $article->setType($this->getData('type'), null);
     // Localized
     $article->setLanguage($this->getData('language'));
     // Localized
     $article->setSponsor($this->getData('sponsor'), null);
     // Localized
     $article->setCitations($this->getData('citations'));
     if ($this->isEditor) {
         $article->setHideAuthor($this->getData('hideAuthor') ? $this->getData('hideAuthor') : 0);
     }
     // consider the additional field names from the public identifer plugins
     import('classes.plugins.PubIdPluginHelper');
     $pubIdPluginHelper = new PubIdPluginHelper();
     $pubIdPluginHelper->execute($this, $article);
     // Update authors
     $authors = $this->getData('authors');
     for ($i = 0, $count = count($authors); $i < $count; $i++) {
         if ($authors[$i]['authorId'] > 0) {
             // Update an existing author
             $author =& $authorDao->getAuthor($authors[$i]['authorId'], $article->getId());
             $isExistingAuthor = true;
         } else {
             // Create a new author
             if (checkPhpVersion('5.0.0')) {
                 // *5488* PHP4 Requires explicit instantiation-by-reference
                 $author = new Author();
             } else {
                 $author =& new Author();
             }
             $isExistingAuthor = false;
         }
         if ($author != null) {
             $author->setSubmissionId($article->getId());
             $author->setFirstName($authors[$i]['firstName']);
             $author->setMiddleName($authors[$i]['middleName']);
             $author->setLastName($authors[$i]['lastName']);
             $author->setAffiliation($authors[$i]['affiliation'], null);
             // Localized
             $author->setCountry($authors[$i]['country']);
             $author->setEmail($authors[$i]['email']);
             $author->setData('orcid', $authors[$i]['orcid']);
             $author->setUrl($authors[$i]['url']);
             if (array_key_exists('competingInterests', $authors[$i])) {
                 $author->setCompetingInterests($authors[$i]['competingInterests'], null);
                 // Localized
             }
             $author->setBiography($authors[$i]['biography'], null);
             // Localized
             $author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0);
             $author->setSequence($authors[$i]['seq']);
             HookRegistry::call('Submission::Form::MetadataForm::Execute', array(&$author, &$authors[$i]));
             if ($isExistingAuthor) {
                 $authorDao->updateAuthor($author);
             } else {
                 $authorDao->insertAuthor($author);
             }
             unset($author);
         }
     }
     // Remove deleted authors
     $deletedAuthors = preg_split('/:/', $this->getData('deletedAuthors'), -1, PREG_SPLIT_NO_EMPTY);
     for ($i = 0, $count = count($deletedAuthors); $i < $count; $i++) {
         $authorDao->deleteAuthorById($deletedAuthors[$i], $article->getId());
     }
     if ($this->isEditor) {
         $article->setCopyrightHolder($this->getData('copyrightHolder'), null);
         $article->setCopyrightYear($this->getData('copyrightYear'));
         $article->setLicenseURL($this->getData('licenseURL'));
     }
     parent::execute();
     // Save the article
     $articleDao->updateArticle($article);
     // Update search index
     import('classes.search.ArticleSearchIndex');
     $articleSearchIndex = new ArticleSearchIndex();
     $articleSearchIndex->articleMetadataChanged($article);
     $articleSearchIndex->articleChangesFinished();
     // Update references list if it changed.
     $rawCitationList = $article->getCitations();
     if ($previousRawCitationList != $rawCitationList) {
         $citationDao->importCitations($request, ASSOC_TYPE_ARTICLE, $article->getId(), $rawCitationList);
     }
     return $article->getId();
 }
 /**
  * Save changes to article.
  * @param $request Request
  * @return int the article ID
  */
 function execute()
 {
     $articleDao =& DAORegistry::getDAO('ArticleDAO');
     $authorDao =& DAORegistry::getDAO('AuthorDAO');
     $article =& $this->article;
     // Retrieve the previous citation list for comparison.
     $previousRawCitationList = $article->getCitations();
     // Update article
     $article->setTitle($this->getData('title'), null);
     // Localized
     $article->setAbstract($this->getData('abstract'), null);
     // Localized
     $article->setDiscipline($this->getData('discipline'), null);
     // Localized
     $article->setSubjectClass($this->getData('subjectClass'), null);
     // Localized
     $article->setSubject($this->getData('subject'), null);
     // Localized
     $article->setCoverageGeo($this->getData('coverageGeo'), null);
     // Localized
     $article->setCoverageChron($this->getData('coverageChron'), null);
     // Localized
     $article->setCoverageSample($this->getData('coverageSample'), null);
     // Localized
     $article->setType($this->getData('type'), null);
     // Localized
     $article->setLanguage($this->getData('language'));
     $article->setSponsor($this->getData('sponsor'), null);
     // Localized
     $article->setCitations($this->getData('citations'));
     if ($article->getSubmissionProgress() <= $this->step) {
         $article->stampStatusModified();
         $article->setSubmissionProgress($this->step + 1);
     }
     // Update authors
     $authors = $this->getData('authors');
     for ($i = 0, $count = count($authors); $i < $count; $i++) {
         if ($authors[$i]['authorId'] > 0) {
             // Update an existing author
             $author =& $authorDao->getAuthor($authors[$i]['authorId'], $article->getId());
             $isExistingAuthor = true;
         } else {
             // Create a new author
             $author = new Author();
             $isExistingAuthor = false;
         }
         if ($author != null) {
             $author->setSubmissionId($article->getId());
             $author->setFirstName($authors[$i]['firstName']);
             $author->setMiddleName($authors[$i]['middleName']);
             $author->setLastName($authors[$i]['lastName']);
             $author->setAffiliation($authors[$i]['affiliation'], null);
             $author->setCountry($authors[$i]['country']);
             $author->setEmail($authors[$i]['email']);
             $author->setData('orcid', $authors[$i]['orcid']);
             $author->setUrl($authors[$i]['url']);
             if (array_key_exists('competingInterests', $authors[$i])) {
                 $author->setCompetingInterests($authors[$i]['competingInterests'], null);
             }
             $author->setBiography($authors[$i]['biography'], null);
             $author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0);
             $author->setSequence($authors[$i]['seq']);
             HookRegistry::call('Author::Form::Submit::AuthorSubmitStep3Form::Execute', array(&$author, &$authors[$i]));
             if ($isExistingAuthor) {
                 $authorDao->updateAuthor($author);
             } else {
                 $authorDao->insertAuthor($author);
             }
         }
         unset($author);
     }
     // Remove deleted authors
     $deletedAuthors = preg_split('/:/', $this->getData('deletedAuthors'), -1, PREG_SPLIT_NO_EMPTY);
     for ($i = 0, $count = count($deletedAuthors); $i < $count; $i++) {
         $authorDao->deleteAuthorById($deletedAuthors[$i], $article->getId());
     }
     parent::execute();
     // Save the article
     $articleDao->updateArticle($article);
     // Update references list if it changed.
     $citationDao =& DAORegistry::getDAO('CitationDAO');
     $rawCitationList = $article->getCitations();
     if ($previousRawCitationList != $rawCitationList) {
         $citationDao->importCitations($this->request, ASSOC_TYPE_ARTICLE, $article->getId(), $rawCitationList);
     }
     return $this->articleId;
 }
Exemplo n.º 3
0
 function handleAuthorNode(&$conference, &$schedConf, &$authorNode, &$track, &$paper, &$errors)
 {
     $errors = array();
     $conferenceSupportedLocales = array_keys($conference->getSupportedLocaleNames());
     // => conference locales must be set up before
     $conferencePrimaryLocale = $conference->getPrimaryLocale();
     $author = new Author();
     if ($node = $authorNode->getChildByName('firstname')) {
         $author->setFirstName($node->getValue());
     }
     if ($node = $authorNode->getChildByName('middlename')) {
         $author->setMiddleName($node->getValue());
     }
     if ($node = $authorNode->getChildByName('lastname')) {
         $author->setLastName($node->getValue());
     }
     if ($node = $authorNode->getChildByName('affiliation')) {
         $author->setAffiliation($node->getValue());
     }
     if ($node = $authorNode->getChildByName('country')) {
         $author->setCountry($node->getValue());
     }
     if ($node = $authorNode->getChildByName('email')) {
         $author->setEmail($node->getValue());
     }
     if ($node = $authorNode->getChildByName('url')) {
         $author->setUrl($node->getValue());
     }
     for ($index = 0; $node = $authorNode->getChildByName('biography', $index); $index++) {
         $locale = $node->getAttribute('locale');
         if ($locale == '') {
             $locale = $conferencePrimaryLocale;
         } elseif (!in_array($locale, $conferenceSupportedLocales)) {
             $errors[] = array('plugins.importexport.native.import.error.paperAuthorBiographyLocaleUnsupported', array('authorFullName' => $author->getFullName(), 'paperTitle' => $paper->getLocalizedTitle(), 'locale' => $locale));
             return false;
         }
         $author->setBiography($node->getValue(), $locale);
     }
     $author->setPrimaryContact($authorNode->getAttribute('primary_contact') === 'true' ? 1 : 0);
     $paper->addAuthor($author);
     // instead of $author->setSequence($index+1);
     return true;
 }
 /**
  * Save changes to article.
  * @return int the article ID
  */
 function execute()
 {
     $articleDao =& DAORegistry::getDAO('ArticleDAO');
     if (isset($this->article)) {
         // Update existing article
         $this->article->setSectionId($this->getData('sectionId'));
         $this->article->setLocale($this->getData('locale'));
         $this->article->setCommentsToEditor($this->getData('commentsToEditor'));
         if ($this->article->getSubmissionProgress() <= $this->step) {
             $this->article->stampStatusModified();
             $this->article->setSubmissionProgress($this->step + 1);
         }
         $articleDao->updateArticle($this->article);
     } else {
         // Insert new article
         $journal =& $this->request->getJournal();
         $user =& $this->request->getUser();
         $this->article = new Article();
         $this->article->setLocale($this->getData('locale'));
         $this->article->setUserId($user->getId());
         $this->article->setJournalId($journal->getId());
         $this->article->setSectionId($this->getData('sectionId'));
         $this->article->stampStatusModified();
         $this->article->setSubmissionProgress($this->step + 1);
         $this->article->setLanguage(String::substr($this->article->getLocale(), 0, 2));
         $this->article->setCommentsToEditor($this->getData('commentsToEditor'));
         $articleDao->insertArticle($this->article);
         $this->articleId = $this->article->getId();
         // Set user to initial author
         $authorDao =& DAORegistry::getDAO('AuthorDAO');
         /* @var $authorDao AuthorDAO */
         $user =& $this->request->getUser();
         $author = new Author();
         $author->setSubmissionId($this->articleId);
         $author->setFirstName($user->getFirstName());
         $author->setMiddleName($user->getMiddleName());
         $author->setLastName($user->getLastName());
         $author->setAffiliation($user->getAffiliation(null), null);
         $author->setCountry($user->getCountry());
         $author->setEmail($user->getEmail());
         $author->setData('orcid', $user->getData('orcid'));
         $author->setUrl($user->getUrl());
         $author->setBiography($user->getBiography(null), null);
         $author->setPrimaryContact(1);
         $authorDao->insertAuthor($author);
     }
     return $this->articleId;
 }
Exemplo n.º 5
0
 /**
  * Save author
  * @see Form::execute()
  * @see Form::execute()
  */
 function execute()
 {
     $authorDao = DAORegistry::getDAO('AuthorDAO');
     $submission = $this->getSubmission();
     $author = $this->getAuthor();
     if (!$author) {
         // this is a new submission contributor
         $author = new Author();
         $author->setSubmissionId($submission->getId());
         $existingAuthor = false;
     } else {
         $existingAuthor = true;
         if ($submission->getId() !== $author->getSubmissionId()) {
             fatalError('Invalid author!');
         }
     }
     $author->setFirstName($this->getData('firstName'));
     $author->setMiddleName($this->getData('middleName'));
     $author->setLastName($this->getData('lastName'));
     $author->setSuffix($this->getData('suffix'));
     $author->setAffiliation($this->getData('affiliation'), null);
     // localized
     $author->setCountry($this->getData('country'));
     $author->setEmail($this->getData('email'));
     $author->setUrl($this->getData('userUrl'));
     $author->setOrcid($this->getData('orcid'));
     $author->setUserGroupId($this->getData('userGroupId'));
     $author->setBiography($this->getData('biography'), null);
     // localized
     $author->setPrimaryContact($this->getData('primaryContact') ? true : false);
     $author->setIncludeInBrowse($this->getData('includeInBrowse') ? true : false);
     // in order to be able to use the hook
     parent::execute();
     if ($existingAuthor) {
         $authorDao->updateObject($author);
         $authorId = $author->getId();
     } else {
         $authorId = $authorDao->insertObject($author);
     }
     return $authorId;
 }
 /**
  * Save changes to submission.
  * @return int the monograph ID
  */
 function execute()
 {
     $monographDao =& DAORegistry::getDAO('MonographDAO');
     if (isset($this->monograph)) {
         // Update existing monograph
         $this->monograph->setSeriesId($this->getData('seriesId'));
         $this->monograph->setLocale($this->getData('locale'));
         $this->monograph->setCommentsToEditor($this->getData('commentsToEditor'));
         if ($this->monograph->getSubmissionProgress() <= $this->step) {
             $this->monograph->stampStatusModified();
             $this->monograph->setSubmissionProgress($this->step + 1);
         }
         $monographDao->updateMonograph($this->monograph);
     } else {
         $press =& Request::getPress();
         $user =& Request::getUser();
         // Get the session and the user group id currently used
         $sessionMgr =& SessionManager::getManager();
         $session =& $sessionMgr->getUserSession();
         // Create new monograph
         $this->monograph = new Monograph();
         $this->monograph->setLocale($this->getData('locale'));
         $this->monograph->setUserId($user->getId());
         $this->monograph->setPressId($press->getId());
         $this->monograph->setSeriesId($this->getData('seriesId'));
         $this->monograph->stampStatusModified();
         $this->monograph->setSubmissionProgress($this->step + 1);
         $this->monograph->setLanguage(String::substr($this->monograph->getLocale(), 0, 2));
         $this->monograph->setCommentsToEditor($this->getData('commentsToEditor'));
         $this->monograph->setWorkType($this->getData('isEditedVolume') ? WORK_TYPE_EDITED_VOLUME : WORK_TYPE_AUTHORED_WORK);
         $this->monograph->setCurrentStageId(WORKFLOW_STAGE_ID_SUBMISSION);
         // Get a default user group id for an Author
         $userGroupDao =& DAORegistry::getDAO('UserGroupDAO');
         $defaultAuthorGroup =& $userGroupDao->getDefaultByRoleId($press->getId(), ROLE_ID_AUTHOR);
         // Set user to initial author
         $authorDao =& DAORegistry::getDAO('AuthorDAO');
         $user =& Request::getUser();
         $author = new Author();
         $author->setFirstName($user->getFirstName());
         $author->setMiddleName($user->getMiddleName());
         $author->setLastName($user->getLastName());
         $author->setAffiliation($user->getAffiliation(null), null);
         $author->setCountry($user->getCountry());
         $author->setEmail($user->getEmail());
         $author->setUrl($user->getUrl());
         $author->setUserGroupId($defaultAuthorGroup->getId());
         $author->setBiography($user->getBiography(null), null);
         $author->setPrimaryContact(1);
         $monographDao->insertMonograph($this->monograph);
         $this->monographId = $this->monograph->getId();
         $author->setSubmissionId($this->monographId);
         $authorDao->insertAuthor($author);
     }
     return $this->monographId;
 }
Exemplo n.º 7
0
 /**
  * Save changes to paper.
  * @return int the paper ID
  */
 function execute()
 {
     $paperDao =& DAORegistry::getDAO('PaperDAO');
     $authorDao =& DAORegistry::getDAO('AuthorDAO');
     $paper =& $this->paper;
     $conference =& Request::getConference();
     $schedConf =& Request::getSchedConf();
     $user =& Request::getUser();
     // Update paper
     $paper->setTitle($this->getData('title'), null);
     // Localized
     $reviewMode = $this->paper->getReviewMode();
     if ($reviewMode != REVIEW_MODE_PRESENTATIONS_ALONE) {
         $paper->setAbstract($this->getData('abstract'), null);
         // Localized
     }
     $paper->setDiscipline($this->getData('discipline'), null);
     // Localized
     $paper->setSubjectClass($this->getData('subjectClass'), null);
     // Localized
     $paper->setSubject($this->getData('subject'), null);
     // Localized
     $paper->setCoverageGeo($this->getData('coverageGeo'), null);
     // Localized
     $paper->setCoverageChron($this->getData('coverageChron'), null);
     // Localized
     $paper->setCoverageSample($this->getData('coverageSample'), null);
     // Localized
     $paper->setType($this->getData('type'), null);
     // Localized
     $paper->setLanguage($this->getData('language'));
     // Localized
     $paper->setSponsor($this->getData('sponsor'), null);
     // Localized
     $paper->setCitations($this->getData('citations'));
     // Update the submission progress if necessary.
     if ($paper->getSubmissionProgress() <= $this->step) {
         $paper->stampStatusModified();
         // If we aren't about to collect the paper, the submission is complete
         // (for now)
         $reviewMode = $this->paper->getReviewMode();
         if ($reviewMode == REVIEW_MODE_BOTH_SIMULTANEOUS || $reviewMode == REVIEW_MODE_PRESENTATIONS_ALONE) {
             if (!$schedConf->getSetting('acceptSupplementaryReviewMaterials')) {
                 $paper->setSubmissionProgress($this->step + 2);
             } else {
                 $paper->setSubmissionProgress($this->step + 1);
             }
             // The line below is necessary to ensure that
             // the paper upload goes in with the correct
             // stage number (i.e. paper).
             $paper->setCurrentStage(REVIEW_STAGE_PRESENTATION);
         } else {
             $paper->setDateSubmitted(Core::getCurrentDate());
             $paper->stampStatusModified();
             $paper->setCurrentStage(REVIEW_STAGE_ABSTRACT);
             $this->assignDirectors($paper);
             if ($schedConf->getSetting('acceptSupplementaryReviewMaterials')) {
                 $paper->setSubmissionProgress($this->step + 2);
             } else {
                 $paper->setSubmissionProgress(0);
                 $this->confirmSubmission($paper, $user, $schedConf, $conference, 'SUBMISSION_ACK');
             }
         }
     }
     // Update authors
     $authors = $this->getData('authors');
     for ($i = 0, $count = count($authors); $i < $count; $i++) {
         if ($authors[$i]['authorId'] > 0) {
             // Update an existing author
             $author =& $paper->getAuthor($authors[$i]['authorId']);
             $isExistingAuthor = true;
         } else {
             // Create a new author
             $author = new Author();
             $isExistingAuthor = false;
         }
         if ($author != null) {
             $author->setFirstName($authors[$i]['firstName']);
             $author->setMiddleName($authors[$i]['middleName']);
             $author->setLastName($authors[$i]['lastName']);
             $author->setAffiliation($authors[$i]['affiliation']);
             $author->setCountry($authors[$i]['country']);
             $author->setEmail($authors[$i]['email']);
             $author->setUrl($authors[$i]['url']);
             $author->setBiography($authors[$i]['biography'], null);
             // Localized
             $author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0);
             $author->setSequence($authors[$i]['seq']);
             if ($isExistingAuthor == false) {
                 $paper->addAuthor($author);
             }
         }
         unset($author);
     }
     // Remove deleted authors
     $deletedAuthors = explode(':', $this->getData('deletedAuthors'));
     for ($i = 0, $count = count($deletedAuthors); $i < $count; $i++) {
         $paper->removeAuthor($deletedAuthors[$i]);
     }
     // Save the paper
     $paperDao->updatePaper($paper);
     // Log the submission, even though it may not be "complete"
     // at this step. This is important because we don't otherwise
     // capture changes in review process.
     import('paper.log.PaperLog');
     import('paper.log.PaperEventLogEntry');
     PaperLog::logEvent($this->paperId, PAPER_LOG_ABSTRACT_SUBMIT, LOG_TYPE_AUTHOR, $user->getId(), 'log.author.abstractSubmitted', array('submissionId' => $paper->getId(), 'authorName' => $user->getFullName()));
     return $this->paperId;
 }
 /**
  * Save settings.
  */
 function execute()
 {
     $articleDao =& DAORegistry::getDAO('ArticleDAO');
     $signoffDao =& DAORegistry::getDAO('SignoffDAO');
     $sectionEditorSubmissionDao =& DAORegistry::getDAO('SectionEditorSubmissionDAO');
     $application =& PKPApplication::getApplication();
     $request =& $application->getRequest();
     $user =& $request->getUser();
     $router =& $request->getRouter();
     $journal =& $router->getContext($request);
     $article = new Article();
     $article->setLocale($journal->getPrimaryLocale());
     // FIXME in bug #5543
     $article->setUserId($user->getId());
     $article->setJournalId($journal->getId());
     $article->setSectionId($this->getData('sectionId'));
     $article->setLanguage(String::substr($journal->getPrimaryLocale(), 0, 2));
     $article->setTitle($this->getData('title'), null);
     // Localized
     $article->setAbstract($this->getData('abstract'), null);
     // Localized
     $article->setDiscipline($this->getData('discipline'), null);
     // Localized
     $article->setSubjectClass($this->getData('subjectClass'), null);
     // Localized
     $article->setSubject($this->getData('subject'), null);
     // Localized
     $article->setCoverageGeo($this->getData('coverageGeo'), null);
     // Localized
     $article->setCoverageChron($this->getData('coverageChron'), null);
     // Localized
     $article->setCoverageSample($this->getData('coverageSample'), null);
     // Localized
     $article->setType($this->getData('type'), null);
     // Localized
     $article->setSponsor($this->getData('sponsor'), null);
     // Localized
     $article->setCitations($this->getData('citations'));
     $article->setPages($this->getData('pages'));
     // Set some default values so the ArticleDAO doesn't complain when adding this article
     $article->setDateSubmitted(Core::getCurrentDate());
     $article->setStatus(STATUS_PUBLISHED);
     $article->setSubmissionProgress(0);
     $article->stampStatusModified();
     $article->setCurrentRound(1);
     $article->setFastTracked(1);
     $article->setHideAuthor(0);
     $article->setCommentsStatus(0);
     // Insert the article to get it's ID
     $articleDao->insertArticle($article);
     $articleId = $article->getId();
     // Add authors
     $authors = $this->getData('authors');
     for ($i = 0, $count = count($authors); $i < $count; $i++) {
         if ($authors[$i]['authorId'] > 0) {
             // Update an existing author
             $author =& $article->getAuthor($authors[$i]['authorId']);
             $isExistingAuthor = true;
         } else {
             // Create a new author
             $author = new Author();
             $isExistingAuthor = false;
         }
         if ($author != null) {
             $author->setSubmissionId($articleId);
             $author->setFirstName($authors[$i]['firstName']);
             $author->setMiddleName($authors[$i]['middleName']);
             $author->setLastName($authors[$i]['lastName']);
             if (array_key_exists('affiliation', $authors[$i])) {
                 $author->setAffiliation($authors[$i]['affiliation'], null);
             }
             $author->setCountry($authors[$i]['country']);
             $author->setEmail($authors[$i]['email']);
             $author->setUrl($authors[$i]['url']);
             if (array_key_exists('competingInterests', $authors[$i])) {
                 $author->setCompetingInterests($authors[$i]['competingInterests'], null);
             }
             $author->setBiography($authors[$i]['biography'], null);
             $author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0);
             $author->setSequence($authors[$i]['seq']);
             if ($isExistingAuthor == false) {
                 $article->addAuthor($author);
             }
         }
     }
     // Add the submission files as galleys
     import('classes.file.TemporaryFileManager');
     import('classes.file.ArticleFileManager');
     $tempFileIds = $this->getData('tempFileId');
     $temporaryFileManager = new TemporaryFileManager();
     $articleFileManager = new ArticleFileManager($articleId);
     foreach (array_keys($tempFileIds) as $locale) {
         $temporaryFile = $temporaryFileManager->getFile($tempFileIds[$locale], $user->getId());
         $fileId = null;
         if ($temporaryFile) {
             $fileId = $articleFileManager->temporaryFileToArticleFile($temporaryFile, ARTICLE_FILE_SUBMISSION);
             $fileType = $temporaryFile->getFileType();
             if (strstr($fileType, 'html')) {
                 import('classes.article.ArticleHTMLGalley');
                 $galley = new ArticleHTMLGalley();
             } else {
                 import('classes.article.ArticleGalley');
                 $galley = new ArticleGalley();
             }
             $galley->setArticleId($articleId);
             $galley->setFileId($fileId);
             $galley->setLocale($locale);
             if ($galley->isHTMLGalley()) {
                 $galley->setLabel('HTML');
             } else {
                 if (strstr($fileType, 'pdf')) {
                     $galley->setLabel('PDF');
                 } else {
                     if (strstr($fileType, 'postscript')) {
                         $galley->setLabel('Postscript');
                     } else {
                         if (strstr($fileType, 'xml')) {
                             $galley->setLabel('XML');
                         } else {
                             $galley->setLabel(__('common.untitled'));
                         }
                     }
                 }
             }
             $galleyDao =& DAORegistry::getDAO('ArticleGalleyDAO');
             $galleyDao->insertGalley($galley);
         }
         if ($locale == $journal->getPrimaryLocale()) {
             $article->setSubmissionFileId($fileId);
             $article->SetReviewFileId($fileId);
         }
         // Update file search index
         import('classes.search.ArticleSearchIndex');
         if (isset($galley)) {
             ArticleSearchIndex::updateFileIndex($galley->getArticleId(), ARTICLE_SEARCH_GALLEY_FILE, $galley->getFileId());
         }
     }
     // Designate this as the review version by default.
     $authorSubmissionDao =& DAORegistry::getDAO('AuthorSubmissionDAO');
     $authorSubmission =& $authorSubmissionDao->getAuthorSubmission($articleId);
     import('classes.submission.author.AuthorAction');
     AuthorAction::designateReviewVersion($authorSubmission, true);
     // Accept the submission
     $sectionEditorSubmission =& $sectionEditorSubmissionDao->getSectionEditorSubmission($articleId);
     $articleFileManager = new ArticleFileManager($articleId);
     $sectionEditorSubmission->setReviewFile($articleFileManager->getFile($article->getSubmissionFileId()));
     import('classes.submission.sectionEditor.SectionEditorAction');
     SectionEditorAction::recordDecision($sectionEditorSubmission, SUBMISSION_EDITOR_DECISION_ACCEPT);
     // Create signoff infrastructure
     $copyeditInitialSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_INITIAL', ASSOC_TYPE_ARTICLE, $articleId);
     $copyeditAuthorSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_AUTHOR', ASSOC_TYPE_ARTICLE, $articleId);
     $copyeditFinalSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_FINAL', ASSOC_TYPE_ARTICLE, $articleId);
     $copyeditInitialSignoff->setUserId(0);
     $copyeditAuthorSignoff->setUserId($user->getId());
     $copyeditFinalSignoff->setUserId(0);
     $signoffDao->updateObject($copyeditInitialSignoff);
     $signoffDao->updateObject($copyeditAuthorSignoff);
     $signoffDao->updateObject($copyeditFinalSignoff);
     $layoutSignoff = $signoffDao->build('SIGNOFF_LAYOUT', ASSOC_TYPE_ARTICLE, $articleId);
     $layoutSignoff->setUserId(0);
     $signoffDao->updateObject($layoutSignoff);
     $proofAuthorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_AUTHOR', ASSOC_TYPE_ARTICLE, $articleId);
     $proofProofreaderSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_PROOFREADER', ASSOC_TYPE_ARTICLE, $articleId);
     $proofLayoutEditorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_LAYOUT', ASSOC_TYPE_ARTICLE, $articleId);
     $proofAuthorSignoff->setUserId($user->getId());
     $proofProofreaderSignoff->setUserId(0);
     $proofLayoutEditorSignoff->setUserId(0);
     $signoffDao->updateObject($proofAuthorSignoff);
     $signoffDao->updateObject($proofProofreaderSignoff);
     $signoffDao->updateObject($proofLayoutEditorSignoff);
     import('classes.author.form.submit.AuthorSubmitForm');
     AuthorSubmitForm::assignEditors($article);
     $articleDao->updateArticle($article);
     // Add to end of editing queue
     import('classes.submission.editor.EditorAction');
     if (isset($galley)) {
         EditorAction::expediteSubmission($article);
     }
     if ($this->getData('destination') == "issue") {
         // Add to an existing issue
         $issueId = $this->getData('issueId');
         $this->scheduleForPublication($articleId, $issueId);
     }
     // Index article.
     import('classes.search.ArticleSearchIndex');
     ArticleSearchIndex::indexArticleMetadata($article);
     // Import the references list.
     $citationDao =& DAORegistry::getDAO('CitationDAO');
     $rawCitationList = $article->getCitations();
     $citationDao->importCitations($request, ASSOC_TYPE_ARTICLE, $articleId, $rawCitationList);
 }
Exemplo n.º 9
0
 /**
  * Save changes to paper.
  * @return int the paper ID
  */
 function execute()
 {
     $paperDao = DAORegistry::getDAO('PaperDAO');
     if (isset($this->paper)) {
         $reviewMode = $this->paper->getReviewMode();
         // Update existing paper
         $this->paper->setTrackId($this->getData('trackId'));
         $this->paper->setLocale($this->getData('locale'));
         $this->paper->setCommentsToDirector($this->getData('commentsToDirector'));
         $this->paper->setData('sessionType', $this->getData('sessionType'));
         if ($this->paper->getSubmissionProgress() <= $this->step) {
             $this->paper->stampStatusModified();
             if ($reviewMode == REVIEW_MODE_ABSTRACTS_ALONE) {
                 $this->paper->setSubmissionProgress($this->step + 2);
             } else {
                 $this->paper->setSubmissionProgress($this->step + 1);
             }
         }
         $paperDao->updatePaper($this->paper);
     } else {
         // Insert new paper
         $conference =& Request::getConference();
         $schedConf =& Request::getSchedConf();
         $user =& Request::getUser();
         $this->paper = new Paper();
         $this->paper->setLocale($this->getData('locale'));
         $this->paper->setUserId($user->getId());
         $this->paper->setSchedConfId($schedConf->getId());
         $this->paper->setTrackId($this->getData('trackId'));
         $this->paper->stampStatusModified();
         $reviewMode = $schedConf->getSetting('reviewMode');
         $this->paper->setReviewMode($reviewMode);
         $this->paper->setLanguage(String::substr($this->paper->getLocale(), 0, 2));
         $this->paper->setCommentsToDirector($this->getData('commentsToDirector'));
         switch ($reviewMode) {
             case REVIEW_MODE_ABSTRACTS_ALONE:
             case REVIEW_MODE_BOTH_SEQUENTIAL:
                 $this->paper->setSubmissionProgress($this->step + 2);
                 $this->paper->setCurrentRound(REVIEW_ROUND_ABSTRACT);
                 break;
             case REVIEW_MODE_PRESENTATIONS_ALONE:
             case REVIEW_MODE_BOTH_SIMULTANEOUS:
                 $this->paper->setSubmissionProgress($this->step + 1);
                 $this->paper->setCurrentRound(REVIEW_ROUND_PRESENTATION);
                 break;
         }
         $this->paper->setData('sessionType', $this->getData('sessionType'));
         $paperDao->insertPaper($this->paper);
         $this->paperId = $this->paper->getPaperId();
         // Set user to initial author
         $authorDao = DAORegistry::getDAO('AuthorDAO');
         /* @var $authorDao AuthorDAO */
         $user =& Request::getUser();
         $author = new Author();
         $author->setSubmissionId($this->paperId);
         $author->setFirstName($user->getFirstName());
         $author->setMiddleName($user->getMiddleName());
         $author->setLastName($user->getLastName());
         $author->setAffiliation($user->getAffiliation(null), null);
         $author->setCountry($user->getCountry());
         $author->setEmail($user->getEmail());
         $author->setUrl($user->getUrl());
         $author->setBiography($user->getBiography(null), null);
         $author->setPrimaryContact(1);
         $authorDao->insertObject($author);
     }
     return $this->paperId;
 }
Exemplo n.º 10
0
 /**
  * Internal function to return an Author object from a row.
  * @param $row array
  * @return Author
  */
 function &_returnAuthorFromRow(&$row)
 {
     $author = new Author();
     $author->setId($row['author_id']);
     $author->setPaperId($row['paper_id']);
     $author->setFirstName($row['first_name']);
     $author->setMiddleName($row['middle_name']);
     $author->setLastName($row['last_name']);
     $author->setAffiliation($row['affiliation']);
     $author->setCountry($row['country']);
     $author->setEmail($row['email']);
     $author->setUrl($row['url']);
     $author->setPrimaryContact($row['primary_contact']);
     $author->setSequence($row['seq']);
     $this->getDataObjectSettings('paper_author_settings', 'author_id', $row['author_id'], $author);
     HookRegistry::call('AuthorDAO::_returnAuthorFromRow', array(&$author, &$row));
     return $author;
 }
Exemplo n.º 11
0
 /**
  * Save changes to article.
  * @return int the article ID
  */
 function execute()
 {
     $articleDao =& DAORegistry::getDAO('ArticleDAO');
     $authorDao =& DAORegistry::getDAO('AuthorDAO');
     $sectionDao =& DAORegistry::getDAO('SectionDAO');
     // Update article
     $article =& $this->article;
     $article->setTitle($this->getData('title'), null);
     // Localized
     $section =& $sectionDao->getSection($article->getSectionId());
     $article->setAbstract($this->getData('abstract'), null);
     // Localized
     import('file.PublicFileManager');
     $publicFileManager = new PublicFileManager();
     if ($publicFileManager->uploadedFileExists('coverPage')) {
         $journal = Request::getJournal();
         $originalFileName = $publicFileManager->getUploadedFileName('coverPage');
         $newFileName = 'cover_article_' . $this->getData('articleId') . '_' . $this->getFormLocale() . '.' . $publicFileManager->getExtension($originalFileName);
         $publicFileManager->uploadJournalFile($journal->getId(), 'coverPage', $newFileName);
         $article->setOriginalFileName($publicFileManager->truncateFileName($originalFileName, 127), $this->getFormLocale());
         $article->setFileName($newFileName, $this->getFormLocale());
         // Store the image dimensions.
         list($width, $height) = getimagesize($publicFileManager->getJournalFilesPath($journal->getId()) . '/' . $newFileName);
         $article->setWidth($width, $this->getFormLocale());
         $article->setHeight($height, $this->getFormLocale());
     }
     $article->setCoverPageAltText($this->getData('coverPageAltText'), null);
     // Localized
     $showCoverPage = array_map(create_function('$arrayElement', 'return (int)$arrayElement;'), (array) $this->getData('showCoverPage'));
     foreach (array_keys($this->getData('coverPageAltText')) as $locale) {
         if (!array_key_exists($locale, $showCoverPage)) {
             $showCoverPage[$locale] = 0;
         }
     }
     $article->setShowCoverPage($showCoverPage, null);
     // Localized
     $hideCoverPageToc = array_map(create_function('$arrayElement', 'return (int)$arrayElement;'), (array) $this->getData('hideCoverPageToc'));
     foreach (array_keys($this->getData('coverPageAltText')) as $locale) {
         if (!array_key_exists($locale, $hideCoverPageToc)) {
             $hideCoverPageToc[$locale] = 0;
         }
     }
     $article->setHideCoverPageToc($hideCoverPageToc, null);
     // Localized
     $hideCoverPageAbstract = array_map(create_function('$arrayElement', 'return (int)$arrayElement;'), (array) $this->getData('hideCoverPageAbstract'));
     foreach (array_keys($this->getData('coverPageAltText')) as $locale) {
         if (!array_key_exists($locale, $hideCoverPageAbstract)) {
             $hideCoverPageAbstract[$locale] = 0;
         }
     }
     $article->setHideCoverPageAbstract($hideCoverPageAbstract, null);
     // Localized
     $article->setDiscipline($this->getData('discipline'), null);
     // Localized
     $article->setSubjectClass($this->getData('subjectClass'), null);
     // Localized
     $article->setSubject($this->getData('subject'), null);
     // Localized
     $article->setCoverageGeo($this->getData('coverageGeo'), null);
     // Localized
     $article->setCoverageChron($this->getData('coverageChron'), null);
     // Localized
     $article->setCoverageSample($this->getData('coverageSample'), null);
     // Localized
     $article->setType($this->getData('type'), null);
     // Localized
     $article->setLanguage($this->getData('language'));
     // Localized
     $article->setSponsor($this->getData('sponsor'), null);
     // Localized
     $article->setCitations($this->getData('citations'));
     if ($this->isEditor) {
         $article->setHideAuthor($this->getData('hideAuthor') ? $this->getData('hideAuthor') : 0);
     }
     // Update authors
     $authors = $this->getData('authors');
     for ($i = 0, $count = count($authors); $i < $count; $i++) {
         if ($authors[$i]['authorId'] > 0) {
             // Update an existing author
             $author =& $article->getAuthor($authors[$i]['authorId']);
             $isExistingAuthor = true;
         } else {
             // Create a new author
             $author = new Author();
             $isExistingAuthor = false;
         }
         if ($author != null) {
             $author->setFirstName($authors[$i]['firstName']);
             $author->setMiddleName($authors[$i]['middleName']);
             $author->setLastName($authors[$i]['lastName']);
             $author->setAffiliation($authors[$i]['affiliation']);
             $author->setCountry($authors[$i]['country']);
             $author->setEmail($authors[$i]['email']);
             $author->setUrl($authors[$i]['url']);
             if (array_key_exists('competingInterests', $authors[$i])) {
                 $author->setCompetingInterests($authors[$i]['competingInterests'], null);
                 // Localized
             }
             $author->setBiography($authors[$i]['biography'], null);
             // Localized
             $author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0);
             $author->setSequence($authors[$i]['seq']);
             if ($isExistingAuthor == false) {
                 $article->addAuthor($author);
             }
         }
     }
     // Remove deleted authors
     $deletedAuthors = explode(':', $this->getData('deletedAuthors'));
     for ($i = 0, $count = count($deletedAuthors); $i < $count; $i++) {
         $article->removeAuthor($deletedAuthors[$i]);
     }
     parent::execute();
     // Save the article
     $articleDao->updateArticle($article);
     // Update search index
     import('search.ArticleSearchIndex');
     ArticleSearchIndex::indexArticleMetadata($article);
     return $article->getId();
 }
Exemplo n.º 12
0
 /**
  * Save changes to article.
  * @return int the article ID
  */
 function execute()
 {
     $articleDao =& DAORegistry::getDAO('ArticleDAO');
     $authorDao =& DAORegistry::getDAO('AuthorDAO');
     // Update article
     $article =& $this->article;
     $article->setTitle($this->getData('title'), null);
     // Localized
     $article->setAbstract($this->getData('abstract'), null);
     // Localized
     $article->setDiscipline($this->getData('discipline'), null);
     // Localized
     $article->setSubjectClass($this->getData('subjectClass'), null);
     // Localized
     $article->setSubject($this->getData('subject'), null);
     // Localized
     $article->setCoverageGeo($this->getData('coverageGeo'), null);
     // Localized
     $article->setCoverageChron($this->getData('coverageChron'), null);
     // Localized
     $article->setCoverageSample($this->getData('coverageSample'), null);
     // Localized
     $article->setType($this->getData('type'), null);
     // Localized
     $article->setLanguage($this->getData('language'));
     $article->setSponsor($this->getData('sponsor'), null);
     // Localized
     $article->setCitations($this->getData('citations'));
     if ($article->getSubmissionProgress() <= $this->step) {
         $article->stampStatusModified();
         $article->setSubmissionProgress($this->step + 1);
     }
     // Update authors
     $authors = $this->getData('authors');
     for ($i = 0, $count = count($authors); $i < $count; $i++) {
         if ($authors[$i]['authorId'] > 0) {
             // Update an existing author
             $author =& $article->getAuthor($authors[$i]['authorId']);
             $isExistingAuthor = true;
         } else {
             // Create a new author
             $author = new Author();
             $isExistingAuthor = false;
         }
         if ($author != null) {
             $author->setArticleId($article->getId());
             $author->setFirstName($authors[$i]['firstName']);
             $author->setMiddleName($authors[$i]['middleName']);
             $author->setLastName($authors[$i]['lastName']);
             $author->setAffiliation($authors[$i]['affiliation']);
             $author->setCountry($authors[$i]['country']);
             $author->setEmail($authors[$i]['email']);
             $author->setUrl($authors[$i]['url']);
             if (array_key_exists('competingInterests', $authors[$i])) {
                 $author->setCompetingInterests($authors[$i]['competingInterests'], null);
             }
             $author->setBiography($authors[$i]['biography'], null);
             $author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0);
             $author->setSequence($authors[$i]['seq']);
             if ($isExistingAuthor == false) {
                 $article->addAuthor($author);
             }
         }
         unset($author);
     }
     // Remove deleted authors
     $deletedAuthors = explode(':', $this->getData('deletedAuthors'));
     for ($i = 0, $count = count($deletedAuthors); $i < $count; $i++) {
         $article->removeAuthor($deletedAuthors[$i]);
     }
     parent::execute();
     // Save the article
     $articleDao->updateArticle($article);
     return $this->articleId;
 }
 /**
  * Save settings.
  */
 function execute($editArticleId)
 {
     $this->editArticleID = $editArticleId;
     $articleDao =& DAORegistry::getDAO('ArticleDAO');
     $signoffDao =& DAORegistry::getDAO('SignoffDAO');
     $sectionEditorSubmissionDao =& DAORegistry::getDAO('SectionEditorSubmissionDAO');
     $application =& PKPApplication::getApplication();
     $request =& $application->getRequest();
     $user =& $request->getUser();
     $router =& $request->getRouter();
     $journal =& $router->getContext($request);
     $article = new Article();
     $article->setLocale($journal->getPrimaryLocale());
     // FIXME in bug #5543
     $article->setUserId($user->getId());
     $article->setJournalId($journal->getId());
     $article->setSectionId($this->getData('sectionId'));
     $article->setLanguage(String::substr($journal->getPrimaryLocale(), 0, 2));
     $article->setTitle($this->getData('title'), null);
     // Localized
     //add Original Journal to Abstract
     $orig_journal = $this->getData('originalJournal');
     $abstr = $this->getData('abstract');
     foreach (array_keys($abstr) as $abs_key) {
         $abstr[$abs_key] .= '  <p id="originalPub"> ' . $orig_journal . ' </p> ';
         //		$abstr[$abs_key] .=  '  <p id="originalPub"> ' . $orig_journal[$abs_key]. ' </p> ';
         //OriginalJournal in EditPlugin only a string and not an array...
         $this->setData('abstract', $abstr);
     }
     $article->setAbstract($this->getData('abstract'), null);
     // Localized
     $article->setDiscipline($this->getData('discipline'), null);
     // Localized
     $article->setSubjectClass($this->getData('subjectClass'), null);
     // Localized
     $article->setSubject($this->getData('subject'), null);
     // Localized
     $article->setCoverageGeo($this->getData('coverageGeo'), null);
     // Localized
     $article->setCoverageChron($this->getData('coverageChron'), null);
     // Localized
     $article->setCoverageSample($this->getData('coverageSample'), null);
     // Localized
     $article->setType($this->getData('type'), null);
     // Localized
     $article->setSponsor($this->getData('sponsor'), null);
     // Localized
     $article->setCitations($this->getData('citations'));
     $article->setPages($this->getData('pages'));
     // Set some default values so the ArticleDAO doesn't complain when adding this article
     $article->setDateSubmitted(Core::getCurrentDate());
     $article->setStatus(STATUS_PUBLISHED);
     $article->setSubmissionProgress(0);
     $article->stampStatusModified();
     $article->setCurrentRound(1);
     $article->setFastTracked(1);
     $article->setHideAuthor(0);
     $article->setCommentsStatus(0);
     // As article has an ID already set it
     $article->setId($this->editArticleID);
     $articleId = $this->editArticleID;
     //delete prior Authors to prevent from double saving the same authors
     $authorDao =& DAORegistry::getDAO('AuthorDAO');
     $authorDao->deleteAuthorsByArticle($articleId);
     // Add authors
     $authors = $this->getData('authors');
     for ($i = 0, $count = count($authors); $i < $count; $i++) {
         if ($authors[$i]['authorId'] > 0) {
             // Update an existing author
             $author =& $article->getAuthor($authors[$i]['authorId']);
             $isExistingAuthor = true;
         } else {
             // Create a new author
             $author = new Author();
             $isExistingAuthor = false;
         }
         if ($author != null) {
             $author->setSubmissionId($articleId);
             $author->setFirstName($authors[$i]['firstName']);
             $author->setMiddleName($authors[$i]['middleName']);
             $author->setLastName($authors[$i]['lastName']);
             if (array_key_exists('affiliation', $authors[$i])) {
                 $author->setAffiliation($authors[$i]['affiliation'], null);
             }
             $author->setCountry($authors[$i]['country']);
             $author->setEmail($authors[$i]['email']);
             $author->setUrl($authors[$i]['url']);
             if (array_key_exists('competingInterests', $authors[$i])) {
                 $author->setCompetingInterests($authors[$i]['competingInterests'], null);
             }
             $author->setBiography($authors[$i]['biography'], null);
             $author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0);
             $author->setSequence($authors[$i]['seq']);
             if ($isExistingAuthor == false) {
                 $article->addAuthor($author);
             }
         }
     }
     // Check whether the user gave a handle and create a handleSubmissionFile in case
     $submissionHandle = $this->getData('submissionHandle');
     $handleSubmissionFileId;
     $handleCheck = FALSE;
     //import FileManager before creating files because otherwise naming of the copied files failes
     import('classes.file.ArticleFileManager');
     foreach (array_keys($submissionHandle) as $locale) {
         if (!empty($submissionHandle[$locale])) {
             $this->deleteOldFile("submission/original", $articleId);
             // $this->deleteOldFile("submission/copyedit", $articleId);
             $handleCheck = TRUE;
             $handleSubmissionId = $this->createHandleTXTFile($submissionHandle[$locale], $articleId, 'submission');
             $handleSubmissionPDFId = $this->createHandlePDF($submissionHandle[$locale], $articleId, 'submission');
             //Add the handle submission files as galley
             $this->setGalley($articleId, $handleSubmissionPDFId, $locale, 'application/pdf');
         }
         if ($handleCheck == TRUE) {
             if ($locale == $journal->getPrimaryLocale()) {
                 $article->setSubmissionFileId($handleSubmissionPDFId);
                 $article->SetReviewFileId($handleSubmissionPDFId);
             }
             // Update file search index
             import('classes.search.ArticleSearchIndex');
             if (isset($galley)) {
                 ArticleSearchIndex::updateFileIndex($galley->getArticleId(), ARTICLE_SEARCH_GALLEY_FILE, $galley->getFileId());
             }
         }
     }
     // Add the submission files as galleys
     import('classes.file.TemporaryFileManager');
     import('classes.file.ArticleFileManager');
     $tempFileIds = $this->getData('tempFileId');
     $temporaryFileManager = new TemporaryFileManager();
     $articleFileManager = new ArticleFileManager($articleId);
     $tempFileCheck = FALSE;
     foreach (array_keys($tempFileIds) as $locale) {
         $temporaryFile = $temporaryFileManager->getFile($tempFileIds[$locale], $user->getId());
         $fileId = null;
         if ($temporaryFile) {
             $this->deleteOldFile("submission/original", $articleId);
             $this->deleteOldFile("submission/copyedit", $articleId);
             $tempFileCheck = TRUE;
             $fileId = $articleFileManager->temporaryFileToArticleFile($temporaryFile, ARTICLE_FILE_SUBMISSION);
             $fileType = $temporaryFile->getFileType();
             $this->setGalley($articleId, $fileId, $locale, $fileType);
             // $galley =& $this->setGalley($articleId, $fileId, $locale, $fileType);
         }
         if ($tempFileCheck == TRUE) {
             if ($locale == $journal->getPrimaryLocale()) {
                 $article->setSubmissionFileId($fileId);
                 $article->SetReviewFileId($fileId);
             }
             // Update file search index
             import('classes.search.ArticleSearchIndex');
             if (isset($galley)) {
                 ArticleSearchIndex::updateFileIndex($galley->getArticleId(), ARTICLE_SEARCH_GALLEY_FILE, $galley->getFileId());
             }
         }
     }
     //Check whether the user gave a handle and create handleSupplFile in case
     $supplHandle = $this->getData('supplHandle');
     $handleSuppFileId = null;
     foreach (array_keys($supplHandle) as $locale) {
         if (!empty($supplHandle[$locale])) {
             $this->deleteOldFile("supp", $articleId);
             $handleSuppFileId = $this->createHandleTXTFile($supplHandle[$locale], $articleId, 'supplementary');
             $handleSupplPDFFileID = $this->createHandlePDF($submissionHandle[$locale], $articleId, 'supplementary');
         }
     }
     //Add uploaded Supplementary file
     $tempSupplFileIds = $this->getData('tempSupplFileId');
     foreach (array_keys($tempSupplFileIds) as $locale) {
         $temporaryFile = $temporaryFileManager->getFile($tempSupplFileIds[$locale], $user->getId());
         $fileId = null;
         if ($temporaryFile) {
             $this->deleteOldFile("supp", $articleId);
             $fileId = $articleFileManager->temporaryFileToArticleFile($temporaryFile, ARTICLE_FILE_SUPP);
             $fileType = $temporaryFile->getFileType();
         }
     }
     // Designate this as the review version by default.
     /*$authorSubmissionDao =& DAORegistry::getDAO('AuthorSubmissionDAO');
     		$authorSubmission =& $authorSubmissionDao->getAuthorSubmission($articleId);
     		import('classes.submission.author.AuthorAction');
     		AuthorAction::designateReviewVersion($authorSubmission, true);
     */
     // Accept the submission
     /*$sectionEditorSubmission =& $sectionEditorSubmissionDao->getSectionEditorSubmission($articleId);
     		$articleFileManager = new ArticleFileManager($articleId);
     		$sectionEditorSubmission->setReviewFile($articleFileManager->getFile($article->getSubmissionFileId()));
     		import('classes.submission.sectionEditor.SectionEditorAction');
     		SectionEditorAction::recordDecision($sectionEditorSubmission, SUBMISSION_EDITOR_DECISION_ACCEPT);
     */
     // Create signoff infrastructure
     $copyeditInitialSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_INITIAL', ASSOC_TYPE_ARTICLE, $articleId);
     $copyeditAuthorSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_AUTHOR', ASSOC_TYPE_ARTICLE, $articleId);
     $copyeditFinalSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_FINAL', ASSOC_TYPE_ARTICLE, $articleId);
     $copyeditInitialSignoff->setUserId(0);
     $copyeditAuthorSignoff->setUserId($user->getId());
     $copyeditFinalSignoff->setUserId(0);
     $signoffDao->updateObject($copyeditInitialSignoff);
     $signoffDao->updateObject($copyeditAuthorSignoff);
     $signoffDao->updateObject($copyeditFinalSignoff);
     $layoutSignoff = $signoffDao->build('SIGNOFF_LAYOUT', ASSOC_TYPE_ARTICLE, $articleId);
     $layoutSignoff->setUserId(0);
     $signoffDao->updateObject($layoutSignoff);
     $proofAuthorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_AUTHOR', ASSOC_TYPE_ARTICLE, $articleId);
     $proofProofreaderSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_PROOFREADER', ASSOC_TYPE_ARTICLE, $articleId);
     $proofLayoutEditorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_LAYOUT', ASSOC_TYPE_ARTICLE, $articleId);
     $proofAuthorSignoff->setUserId($user->getId());
     $proofProofreaderSignoff->setUserId(0);
     $proofLayoutEditorSignoff->setUserId(0);
     $signoffDao->updateObject($proofAuthorSignoff);
     $signoffDao->updateObject($proofProofreaderSignoff);
     $signoffDao->updateObject($proofLayoutEditorSignoff);
     import('classes.author.form.submit.AuthorSubmitForm');
     AuthorSubmitForm::assignEditors($article);
     $articleDao->updateArticle($article);
     // Add to end of editing queue
     import('classes.submission.editor.EditorAction');
     if (isset($galley)) {
         EditorAction::expediteSubmission($article);
     }
     // As the article already has an issue, just get it from database
     $issueDao =& DAORegistry::getDAO('IssueDAO');
     $issue =& $issueDao->getIssueByArticleId($this->editArticleID);
     $issueId = $issue->getIssueId();
     //$this->scheduleForPublication($articleId, $issueId);
     // Index article.
     import('classes.search.ArticleSearchIndex');
     ArticleSearchIndex::indexArticleMetadata($article);
     // Import the references list.
     $citationDao =& DAORegistry::getDAO('CitationDAO');
     $rawCitationList = $article->getCitations();
     $citationDao->importCitations($request, ASSOC_TYPE_ARTICLE, $articleId, $rawCitationList);
 }
 /**
  * Save submissionContributor
  * @see Form::execute()
  * @see Form::execute()
  */
 function execute()
 {
     $authorDao =& DAORegistry::getDAO('AuthorDAO');
     $monograph = $this->getMonograph();
     $submissionContributor =& $this->getSubmissionContributor();
     if (!$submissionContributor) {
         // this is a new submission contributor
         $submissionContributor = new Author();
         $submissionContributor->setMonographId($monograph->getId());
         $existingSubmissionContributor = false;
     } else {
         $existingSubmissionContributor = true;
     }
     assert($monograph->getId() == $submissionContributor->getMonographId());
     $submissionContributor->setFirstName($this->getData('firstName'));
     $submissionContributor->setMiddleName($this->getData('middleName'));
     $submissionContributor->setLastName($this->getData('lastName'));
     $submissionContributor->setAffiliation($this->getData('affiliation'), Locale::getLocale());
     // localized
     $submissionContributor->setCountry($this->getData('country'));
     $submissionContributor->setEmail($this->getData('email'));
     $submissionContributor->setUrl($this->getData('url'));
     $submissionContributor->setUserGroupId($this->getData('userGroupId'));
     $submissionContributor->setBiography($this->getData('biography'), Locale::getLocale());
     // localized
     $submissionContributor->setPrimaryContact($this->getData('primaryContact') ? true : false);
     if ($existingSubmissionContributor) {
         $authorDao->updateAuthor($submissionContributor);
         $authorId = $submissionContributor->getId();
     } else {
         $authorId = $authorDao->insertAuthor($submissionContributor);
     }
     return $authorId;
 }
 function handleAuthorNode(&$journal, &$authorNode, &$issue, &$section, &$article, &$errors)
 {
     $errors = array();
     $journalSupportedLocales = array_keys($journal->getSupportedLocaleNames());
     // => journal locales must be set up before
     $journalPrimaryLocale = $journal->getPrimaryLocale();
     $author = new Author();
     if ($node = $authorNode->getChildByName('firstname')) {
         $author->setFirstName($node->getValue());
     }
     if ($node = $authorNode->getChildByName('middlename')) {
         $author->setMiddleName($node->getValue());
     }
     if ($node = $authorNode->getChildByName('lastname')) {
         $author->setLastName($node->getValue());
     }
     for ($index = 0; $node = $authorNode->getChildByName('affiliation', $index); $index++) {
         $locale = $node->getAttribute('locale');
         if ($locale == '') {
             $locale = $journalPrimaryLocale;
         } elseif (!in_array($locale, $journalSupportedLocales)) {
             $errors[] = array('plugins.importexport.native.import.error.articleAuthorAffiliationLocaleUnsupported', array('authorFullName' => $author->getFullName(), 'articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale));
             return false;
         }
         $author->setAffiliation($node->getValue(), $locale);
     }
     if ($node = $authorNode->getChildByName('country')) {
         $author->setCountry($node->getValue());
     }
     if ($node = $authorNode->getChildByName('email')) {
         $author->setEmail($node->getValue());
     }
     if ($node = $authorNode->getChildByName('url')) {
         $author->setUrl($node->getValue());
     }
     for ($index = 0; $node = $authorNode->getChildByName('competing_interests', $index); $index++) {
         $locale = $node->getAttribute('locale');
         if ($locale == '') {
             $locale = $journalPrimaryLocale;
         } elseif (!in_array($locale, $journalSupportedLocales)) {
             $errors[] = array('plugins.importexport.native.import.error.articleAuthorCompetingInterestsLocaleUnsupported', array('authorFullName' => $author->getFullName(), 'articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale));
             return false;
         }
         $author->setCompetingInterests($node->getValue(), $locale);
     }
     for ($index = 0; $node = $authorNode->getChildByName('biography', $index); $index++) {
         $locale = $node->getAttribute('locale');
         if ($locale == '') {
             $locale = $journalPrimaryLocale;
         } elseif (!in_array($locale, $journalSupportedLocales)) {
             $errors[] = array('plugins.importexport.native.import.error.articleAuthorBiographyLocaleUnsupported', array('authorFullName' => $author->getFullName(), 'articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale));
             return false;
         }
         $author->setBiography($node->getValue(), $locale);
     }
     $author->setPrimaryContact($authorNode->getAttribute('primary_contact') === 'true' ? 1 : 0);
     $article->addAuthor($author);
     // instead of $author->setSequence($index+1);
     return true;
 }
    function importArticles()
    {
        assert($this->xml->name == 'articles');
        $articleDAO =& DAORegistry::getDAO('ArticleDAO');
        $articles = $articleDAO->getArticlesByJournalId($this->journal->getId());
        $journalFileManager = new JournalFileManager($this->journal);
        $publicFileManager =& new PublicFileManager();
        $this->nextElement();
        while ($this->xml->name == 'article') {
            $articleXML = $this->getCurrentElementAsDom();
            $article = new Article();
            $article->setJournalId($this->journal->getId());
            $article->setUserId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $articleXML->userId));
            $article->setSectionId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_SECTION, (int) $articleXML->sectionId));
            $article->setLocale((string) $articleXML->locale);
            $article->setLanguage((string) $articleXML->language);
            $article->setCommentsToEditor((string) $articleXML->commentsToEditor);
            $article->setCitations((string) $articleXML->citations);
            $article->setDateSubmitted((string) $articleXML->dateSubmitted);
            $article->setDateStatusModified((string) $articleXML->dateStatusModified);
            $article->setLastModified((string) $articleXML->lastModified);
            $article->setStatus((int) $articleXML->status);
            $article->setSubmissionProgress((int) $articleXML->submissionProgress);
            $article->setCurrentRound((int) $articleXML->currentRound);
            $article->setPages((string) $articleXML->pages);
            $article->setFastTracked((int) $articleXML->fastTracked);
            $article->setHideAuthor((int) $articleXML->hideAuthor);
            $article->setCommentsStatus((int) $articleXML->commentsStatus);
            $articleDAO->insertArticle($article);
            $oldArticleId = (int) $articleXML->oldId;
            $this->restoreDataObjectSettings($articleDAO, $articleXML->settings, 'article_settings', 'article_id', $article->getId());
            $article =& $articleDAO->getArticle($article->getId());
            // Reload article with restored settings
            $covers = $article->getFileName(null);
            if ($covers) {
                foreach ($covers as $locale => $oldCoverFileName) {
                    $sourceFile = $this->publicFolderPath . '/' . $oldCoverFileName;
                    $extension = $publicFileManager->getExtension($oldCoverFileName);
                    $destFile = 'cover_issue_' . $article->getId() . "_{$locale}.{$extension}";
                    $publicFileManager->copyJournalFile($this->journal->getId(), $sourceFile, $destFile);
                    unlink($sourceFile);
                    $article->setFileName($destFile, $locale);
                    $articleDAO->updateArticle($article);
                }
            }
            $articleFileManager = new ArticleFileManager($article->getId());
            $authorDAO =& DAORegistry::getDAO('AuthorDAO');
            foreach ($articleXML->author as $authorXML) {
                $author = new Author();
                $author->setArticleId($article->getId());
                $author->setFirstName((string) $authorXML->firstName);
                $author->setMiddleName((string) $authorXML->middleName);
                $author->setLastName((string) $authorXML->lastName);
                $author->setSuffix((string) $authorXML->suffix);
                $author->setCountry((string) $authorXML->country);
                $author->setEmail((string) $authorXML->email);
                $author->setUrl((string) $authorXML->url);
                $author->setUserGroupId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_GROUP, (int) $authorXML->userGroupId));
                $author->setPrimaryContact((int) $authorXML->primaryContact);
                $author->setSequence((int) $authorXML->sequence);
                $authorDAO->insertAuthor($author);
                $this->restoreDataObjectSettings($authorDAO, $authorXML->settings, 'author_settings', 'author_id', $author->getId());
                unset($author);
            }
            $articleEmailLogDAO =& DAORegistry::getDAO('ArticleEmailLogDAO');
            $emailLogsXML = array();
            foreach ($articleXML->emailLogs->emailLog as $emailLogXML) {
                array_unshift($emailLogsXML, $emailLogXML);
            }
            foreach ($emailLogsXML as $emailLogXML) {
                $emailLog = new ArticleEmailLogEntry();
                $emailLog->setAssocType(ASSOC_TYPE_ARTICLE);
                $emailLog->setAssocId($article->getId());
                $emailLog->setSenderId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $emailLogXML->senderId));
                $emailLog->setDateSent((string) $emailLogXML->dateSent);
                $emailLog->setIPAddress((string) $emailLogXML->IPAddress);
                $emailLog->setEventType((int) $emailLogXML->eventType);
                $emailLog->setFrom((string) $emailLogXML->from);
                $emailLog->setRecipients((string) $emailLogXML->recipients);
                $emailLog->setCcs((string) $emailLogXML->ccs);
                $emailLog->setBccs((string) $emailLogXML->bccs);
                $emailLog->setSubject((string) $emailLogXML->subject);
                $emailLog->setBody((string) $emailLogXML->body);
                $articleEmailLogDAO->insertObject($emailLog);
                $this->idTranslationTable->register(INTERNAL_TRANSFER_OBJECT_ARTICLE_EMAIL_LOG, (int) $emailLogXML->oldId, $emailLog->getId());
            }
            $articleFileDAO =& DAORegistry::getDAO('ArticleFileDAO');
            foreach ($articleXML->articleFile as $articleFileXML) {
                try {
                    $articleFile = new ArticleFile();
                    $articleFile->setArticleId($article->getId());
                    $articleFile->setSourceFileId((int) $articleFileXML->sourceFileId);
                    $articleFile->setSourceRevision((int) $articleFileXML->sourceRevision);
                    $articleFile->setRevision((int) $articleFileXML->revision);
                    $articleFile->setFileName((string) $articleFileXML->fileName);
                    $articleFile->setFileType((string) $articleFileXML->fileType);
                    $articleFile->setFileSize((string) $articleFileXML->fileSize);
                    $articleFile->setOriginalFileName((string) $articleFileXML->originalFileName);
                    $articleFile->setFileStage((int) $articleFileXML->fileStage);
                    $articleFile->setAssocId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_EMAIL_LOG, (int) $articleFileXML->assocId));
                    $articleFile->setDateUploaded((string) $articleFileXML->dateUploaded);
                    $articleFile->setDateModified((string) $articleFileXML->dateModified);
                    $articleFile->setRound((int) $articleFileXML->round);
                    $articleFile->setViewable((int) $articleFileXML->viewable);
                    $articleFileDAO->insertArticleFile($articleFile);
                    $oldArticleFileId = (int) $articleFileXML->oldId;
                    $oldFileName = $articleFile->getFileName();
                    $stagePath = $articleFileManager->fileStageToPath($articleFile->getFileStage());
                    $fileInTransferPackage = $this->journalFolderPath . "/articles/{$oldArticleId}/{$stagePath}/{$oldFileName}";
                    $newFileName = $articleFileManager->generateFilename($articleFile, $articleFile->getFileStage(), $articleFile->getOriginalFileName());
                    $newFilePath = "/articles/" . $article->getId() . "/{$stagePath}/{$newFileName}";
                    $journalFileManager->copyFile($fileInTransferPackage, $journalFileManager->filesDir . $newFilePath);
                    unlink($fileInTransferPackage);
                    $articleFileDAO->updateArticleFile($articleFile);
                    $this->idTranslationTable->register(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, $oldArticleFileId, $articleFile->getFileId());
                } catch (Exception $e) {
                }
            }
            $articleFiles = $articleFileDAO->getArticleFilesByArticle($article->getId());
            foreach ($articleFiles as $articleFile) {
                try {
                    $articleFile->setSourceFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, $articleFile->getSourceFileId()));
                    $articleFileDAO->updateArticleFile($articleFile);
                } catch (Exception $e) {
                }
            }
            $suppFileDAO =& DAORegistry::getDAO('SuppFileDAO');
            foreach ($articleXML->suppFile as $suppFileXML) {
                $suppFile =& new SuppFile();
                $suppFile->setArticleId($article->getId());
                $suppFile->setRemoteURL((string) $suppFileXML->remoteURL);
                $suppFile->setFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $suppFileXML->fileId));
                $suppFile->setType((string) $suppFileXML->type);
                $suppFile->setDateCreated((string) $suppFileXML->dateCreated);
                $suppFile->setLanguage((string) $suppFileXML->language);
                $suppFile->setShowReviewers((int) $suppFileXML->showReviewers);
                $suppFile->setDateSubmitted((string) $suppFileXML->dateSubmitted);
                $suppFile->setSequence((int) $suppFileXML->sequence);
                $suppFileDAO->insertSuppFile($suppFile);
                $this->restoreDataObjectSettings($suppFileDAO, $suppFileXML->settings, 'article_supp_file_settings', 'supp_id', $suppFile->getId());
            }
            $articleCommentDAO =& DAORegistry::getDAO('ArticleCommentDAO');
            foreach ($articleXML->articleComment as $articleCommentXML) {
                $articleComment = new ArticleComment();
                $articleComment->setArticleId($article->getId());
                $articleComment->setAssocId($article->getId());
                $articleComment->setCommentType((int) $articleCommentXML->commentType);
                $articleComment->setRoleId((int) $articleCommentXML->roleId);
                $articleComment->setAuthorId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $articleCommentXML->authorId));
                $articleComment->setCommentTitle((string) $articleCommentXML->commentTitle);
                $articleComment->setComments((string) $articleCommentXML->comments);
                $articleComment->setDatePosted((string) $articleCommentXML->datePosted);
                $articleComment->setDateModified((string) $articleCommentXML->dateModified);
                $articleComment->setViewable((int) $articleCommentXML->viewable);
                $articleCommentDAO->insertArticleComment($articleComment);
            }
            $articleGalleyDAO =& DAORegistry::getDAO('ArticleGalleyDAO');
            foreach ($articleXML->articleGalley as $articleGalleyXML) {
                $articleGalley = null;
                if ($articleGalleyXML->htmlGalley == "1") {
                    $articleGalley = new ArticleHTMLGalley();
                } else {
                    $articleGalley = new ArticleGalley();
                }
                $articleGalley->setArticleId($article->getId());
                $articleGalley->setLocale((string) $articleGalleyXML->locale);
                $articleGalley->setFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleGalleyXML->fileId));
                $articleGalley->setLabel((string) $articleGalleyXML->label);
                $articleGalley->setSequence((int) $articleGalleyXML->sequence);
                $articleGalley->setRemoteURL((string) $articleGalleyXML->remoteURL);
                if ($articleGalley instanceof ArticleHTMLGalley) {
                    $articleGalley->setStyleFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleGalleyXML->styleFileId));
                }
                $articleGalleyDAO->insertGalley($articleGalley);
                if ($articleGalley instanceof ArticleHTMLGalley) {
                    foreach ($articleGalleyXML->htmlGalleyImage as $articleGalleyImageXML) {
                        $imageId = $this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleGalleyImageXML);
                        $articleGalleyDAO->insertGalleyImage($articleGalley->getId(), $imageId);
                    }
                }
                $this->restoreDataObjectSettings($articleGalleyDAO, $articleGalleyXML->settings, 'article_galley_settings', 'galley_id', $articleGalley->getId());
            }
            $noteDAO =& DAORegistry::getDAO('NoteDAO');
            foreach ($articleXML->articleNote as $articleNoteXML) {
                $articleNote = new Note();
                $articleNote->setUserId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $articleNoteXML->userId));
                $articleNote->setFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleNoteXML->fileId));
                $articleNote->setAssocType(ASSOC_TYPE_ARTICLE);
                $articleNote->setAssocId($article->getId());
                $articleNote->setDateCreated((string) $articleNoteXML->dateCreated);
                $articleNote->setDateModified((string) $articleNoteXML->dateModified);
                $articleNote->setContents((string) $articleNoteXML->contents);
                $articleNote->setTitle((string) $articleNoteXML->title);
                $noteDAO->insertObject($articleNote);
            }
            $editAssignmentDAO =& DAORegistry::getDAO('EditAssignmentDAO');
            foreach ($articleXML->editAssignment as $editAssignmentXML) {
                $editAssignment = new EditAssignment();
                $editAssignment->setArticleId($article->getId());
                $editAssignment->setEditorId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $editAssignmentXML->editorId));
                $editAssignment->setCanReview((int) $editAssignmentXML->canReview);
                $editAssignment->setCanEdit((int) $editAssignmentXML->canEdit);
                $editAssignment->setDateUnderway((string) $editAssignmentXML->dateUnderway);
                $editAssignment->setDateNotified((string) $editAssignmentXML->dateNotified);
                $editAssignmentDAO->insertEditAssignment($editAssignment);
            }
            $reviewAssignmentDAO =& DAORegistry::getDAO('ReviewAssignmentDAO');
            $reviewFormResponseDAO =& DAORegistry::getDAO('ReviewFormResponseDAO');
            foreach ($articleXML->reviewAssignment as $reviewAssignmentXML) {
                $reviewAssignment = new ReviewAssignment();
                $reviewAssignment->setSubmissionId($article->getId());
                $reviewAssignment->setReviewerId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $reviewAssignmentXML->reviewerId));
                try {
                    $reviewAssignment->setReviewerFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $reviewAssignmentXML->reviewerFileId));
                } catch (Exception $e) {
                    $this->logger->log("Arquivo do artigo {$oldArticleId} não encontrado. ID: " . (int) $reviewAssignmentXML->reviewerFileId . "\n");
                }
                $reviewAssignment->setReviewFormId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_REVIEW_FORM, (int) $reviewAssignmentXML->reviewFormId));
                $reviewAssignment->setReviewRoundId((int) $reviewAssignmentXML->reviewRoundId);
                $reviewAssignment->setStageId((int) $reviewAssignmentXML->stageId);
                $reviewAssignment->setReviewerFullName((string) $reviewAssignmentXML->reviewerFullName);
                $reviewAssignment->setCompetingInterests((string) $reviewAssignmentXML->competingInterests);
                $reviewAssignment->setRegretMessage((string) $reviewAssignmentXML->regretMessage);
                $reviewAssignment->setRecommendation((string) $reviewAssignmentXML->recommendation);
                $reviewAssignment->setDateAssigned((string) $reviewAssignmentXML->dateAssigned);
                $reviewAssignment->setDateNotified((string) $reviewAssignmentXML->dateNotified);
                $reviewAssignment->setDateConfirmed((string) $reviewAssignmentXML->dateConfirmed);
                $reviewAssignment->setDateCompleted((string) $reviewAssignmentXML->dateCompleted);
                $reviewAssignment->setDateAcknowledged((string) $reviewAssignmentXML->dateAcknowledged);
                $reviewAssignment->setDateDue((string) $reviewAssignmentXML->dateDue);
                $reviewAssignment->setDateResponseDue((string) $reviewAssignmentXML->dateResponseDue);
                $reviewAssignment->setLastModified((string) $reviewAssignmentXML->lastModified);
                $reviewAssignment->setDeclined((int) $reviewAssignmentXML->declined);
                $reviewAssignment->setReplaced((int) $reviewAssignmentXML->replaced);
                $reviewAssignment->setCancelled((int) $reviewAssignmentXML->cancelled);
                $reviewAssignment->setQuality((int) $reviewAssignmentXML->quality);
                $reviewAssignment->setDateRated((string) $reviewAssignmentXML->dateRated);
                $reviewAssignment->setDateReminded((string) $reviewAssignmentXML->dateReminded);
                $reviewAssignment->setReminderWasAutomatic((int) $reviewAssignmentXML->reminderWasAutomatic);
                $reviewAssignment->setRound((int) $reviewAssignmentXML->round);
                $reviewAssignment->setReviewRevision((int) $reviewAssignmentXML->reviewRevision);
                $reviewAssignment->setReviewMethod((int) $reviewAssignmentXML->reviewMethod);
                $reviewAssignment->setUnconsidered((int) $reviewAssignmentXML->unconsidered);
                $reviewAssignmentDAO->insertObject($reviewAssignment);
                foreach ($reviewAssignmentXML->formResponses->formResponse as $formResponseXML) {
                    $reviewFormResponseDAO->update('INSERT INTO review_form_responses
							(review_form_element_id, review_id, response_type, response_value)
							VALUES
							(?, ?, ?, ?)', array($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_REVIEW_FORM_ELEMENT, (int) $formResponseXML->reviewFormElementId), $reviewAssignment->getId(), (string) $formResponseXML->responseType, (string) $formResponseXML->responseValue));
                }
            }
            $signoffDAO =& DAORegistry::getDAO('SignoffDAO');
            foreach ($articleXML->signoff as $signoffXML) {
                $signoff = new Signoff();
                $signoff->setAssocType(ASSOC_TYPE_ARTICLE);
                $signoff->setAssocId($article->getId());
                $signoff->setUserId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $signoffXML->userId));
                $signoff->setFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $signoffXML->fileId));
                $signoff->setUserGroupId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_GROUP, (int) $signoffXML->userGroupId));
                $signoff->setSymbolic((string) $signoffXML->symbolic);
                $signoff->setFileRevision((int) $signoffXML->fileRevision);
                $signoff->setDateUnderway((string) $signoffXML->dateUnderway);
                $signoff->setDateNotified((string) $signoffXML->dateNotified);
                $signoff->setDateCompleted((string) $signoffXML->dateCompleted);
                $signoff->setDateAcknowledged((string) $signoffXML->dateAcknowledged);
                $signoffDAO->insertObject($signoff);
            }
            $editorSubmissionDAO =& DAORegistry::getDAO('EditorSubmissionDAO');
            foreach ($articleXML->editDecisions as $editDecisionXML) {
                $editDecisions =& $editorSubmissionDAO->update('INSERT INTO edit_decisions (article_id, round, editor_id, decision, date_decided) values (?, ?, ?, ?, ?)', array($article->getId(), (string) $editDecisionXML->round, $this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $editDecisionXML->editorId), (string) $editDecisionXML->decision, (string) $editDecisionXML->dateDecided));
            }
            $publishedArticleDAO =& DAORegistry::getDAO('PublishedArticleDAO');
            if (isset($articleXML->publishedArticle)) {
                $publishedArticleXML = $articleXML->publishedArticle;
                $publishedArticle = new PublishedArticle();
                $publishedArticle->setId($article->getId());
                $publishedArticle->setIssueId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ISSUE, (int) $publishedArticleXML->issueId));
                $publishedArticle->setDatePublished((string) $publishedArticleXML->datePublished);
                $publishedArticle->setSeq((int) $publishedArticleXML->seq);
                $publishedArticle->setAccessStatus((int) $publishedArticleXML->accessStatus);
                $publishedArticleDAO->insertPublishedArticle($publishedArticle);
            }
            $articleEventLogDAO =& DAORegistry::getDAO('ArticleEventLogDAO');
            $eventLogsXML =& iterator_to_array($articleXML->eventLogs->eventLog);
            $eventLogsXML = array();
            foreach ($articleXML->eventLogs->eventLog as $eventLogXML) {
                array_unshift($eventLogsXML, $eventLogXML);
            }
            foreach ($eventLogsXML as $eventLogXML) {
                $eventLog = new ArticleEventLogEntry();
                $eventLog->setAssocType(ASSOC_TYPE_ARTICLE);
                $eventLog->setAssocId($article->getId());
                $eventLog->setUserId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $eventLogXML->userId));
                $eventLog->setDateLogged((string) $eventLogXML->dateLogged);
                $eventLog->setIPAddress((string) $eventLogXML->IPAddress);
                $eventLog->setEventType((int) $eventLogXML->eventType);
                $eventLog->setMessage((string) $eventLogXML->message);
                $eventLog->setIsTranslated((int) $eventLogXML->isTranslated);
                $articleEventLogDAO->insertObject($eventLog);
                $this->restoreDataObjectSettings($articleEventLogDAO, $eventLogXML->settings, 'event_log_settings', 'log_id', $eventLog->getId());
            }
            try {
                $article->setSubmissionFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleXML->submissionFileId));
            } catch (Exception $e) {
            }
            try {
                $article->setRevisedFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleXML->revisedFileId));
            } catch (Exception $e) {
            }
            try {
                $article->setReviewFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleXML->reviewFileId));
            } catch (Exception $e) {
            }
            try {
                $article->setEditorFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleXML->editorFileId));
            } catch (Exception $e) {
            }
            $articleDAO->updateArticle($article);
            $this->nextElement();
        }
    }
Exemplo n.º 17
0
 /**
  * Save settings.
  */
 function execute()
 {
     $articleDao = DAORegistry::getDAO('ArticleDAO');
     $signoffDao = DAORegistry::getDAO('SignoffDAO');
     $sectionEditorSubmissionDao = DAORegistry::getDAO('SectionEditorSubmissionDAO');
     $application = PKPApplication::getApplication();
     $request = $this->request;
     $user = $request->getUser();
     $router = $request->getRouter();
     $journal = $router->getContext($request);
     $article = $articleDao->newDataObject();
     $article->setLocale($journal->getPrimaryLocale());
     // FIXME in bug #5543
     $article->setUserId($user->getId());
     $article->setJournalId($journal->getId());
     $article->setSectionId($this->getData('sectionId'));
     $article->setLanguage($this->getData('language'));
     $article->setTitle($this->getData('title'), null);
     // Localized
     $article->setAbstract($this->getData('abstract'), null);
     // Localized
     $article->setDiscipline($this->getData('discipline'), null);
     // Localized
     $article->setSubjectClass($this->getData('subjectClass'), null);
     // Localized
     $article->setSubject($this->getData('subject'), null);
     // Localized
     $article->setCoverageGeo($this->getData('coverageGeo'), null);
     // Localized
     $article->setCoverageChron($this->getData('coverageChron'), null);
     // Localized
     $article->setCoverageSample($this->getData('coverageSample'), null);
     // Localized
     $article->setType($this->getData('type'), null);
     // Localized
     $article->setSponsor($this->getData('sponsor'), null);
     // Localized
     $article->setCitations($this->getData('citations'));
     $article->setPages($this->getData('pages'));
     // Set some default values so the ArticleDAO doesn't complain when adding this article
     $article->setDateSubmitted(Core::getCurrentDate());
     $article->setStatus(STATUS_PUBLISHED);
     $article->setSubmissionProgress(0);
     $article->stampStatusModified();
     $article->setCurrentRound(1);
     $article->setFastTracked(1);
     $article->setHideAuthor(0);
     $article->setCommentsStatus(0);
     // Insert the article to get it's ID
     $articleDao->insertObject($article);
     $articleId = $article->getId();
     // Add authors
     $authors = $this->getData('authors');
     for ($i = 0, $count = count($authors); $i < $count; $i++) {
         if ($authors[$i]['authorId'] > 0) {
             // Update an existing author
             $author =& $authorDao->getAuthor($authors[$i]['authorId'], $articleId);
             $isExistingAuthor = true;
         } else {
             // Create a new author
             $author = new Author();
             $isExistingAuthor = false;
         }
         if ($author != null) {
             $author->setSubmissionId($articleId);
             $author->setFirstName($authors[$i]['firstName']);
             $author->setMiddleName($authors[$i]['middleName']);
             $author->setLastName($authors[$i]['lastName']);
             if (array_key_exists('affiliation', $authors[$i])) {
                 $author->setAffiliation($authors[$i]['affiliation'], null);
             }
             $author->setCountry($authors[$i]['country']);
             $author->setEmail($authors[$i]['email']);
             $author->setUrl($authors[$i]['url']);
             if (array_key_exists('competingInterests', $authors[$i])) {
                 $author->setCompetingInterests($authors[$i]['competingInterests'], null);
             }
             $author->setBiography($authors[$i]['biography'], null);
             $author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0);
             $author->setSequence($authors[$i]['seq']);
             if ($isExistingAuthor == false) {
                 $authorDao = DAORegistry::getDAO('AuthorDAO');
                 /* @var $authorDao AuthorDAO */
                 $authorDao->insertObject($author);
             }
         }
     }
     // Add the submission files as galleys
     import('lib.pkp.classes.file.TemporaryFileManager');
     import('classes.file.ArticleFileManager');
     $tempFileIds = $this->getData('tempFileId');
     $temporaryFileManager = new TemporaryFileManager();
     $articleFileManager = new ArticleFileManager($articleId);
     $designatedPrimary = false;
     foreach (array_keys($tempFileIds) as $locale) {
         $temporaryFile = $temporaryFileManager->getFile($tempFileIds[$locale], $user->getId());
         $fileId = null;
         if ($temporaryFile) {
             $fileId = $articleFileManager->temporaryFileToArticleFile($temporaryFile, SUBMISSION_FILE_SUBMISSION);
             $fileType = $temporaryFile->getFileType();
             if (strstr($fileType, 'html')) {
                 import('classes.article.ArticleHTMLGalley');
                 $galley = new ArticleHTMLGalley();
             } else {
                 import('classes.article.ArticleGalley');
                 $galley = new ArticleGalley();
             }
             $galley->setArticleId($articleId);
             $galley->setFileId($fileId);
             $galley->setLocale($locale);
             if ($galley->isHTMLGalley()) {
                 $galley->setLabel('HTML');
             } else {
                 if (strstr($fileType, 'pdf')) {
                     $galley->setLabel('PDF');
                 } else {
                     if (strstr($fileType, 'postscript')) {
                         $galley->setLabel('Postscript');
                     } else {
                         if (strstr($fileType, 'xml')) {
                             $galley->setLabel('XML');
                         } else {
                             $galley->setLabel(__('common.untitled'));
                         }
                     }
                 }
             }
             $galleyDao = DAORegistry::getDAO('ArticleGalleyDAO');
             $galleyDao->insertGalley($galley);
             if (!$designatedPrimary) {
                 $article->setSubmissionFileId($fileId);
                 if ($locale == $journal->getPrimaryLocale()) {
                     // Used to make sure that *some* file
                     // is designated Review Version, but
                     // preferrably the primary locale.
                     $designatedPrimary = true;
                 }
             }
         }
         // Update file search index
         import('classes.search.ArticleSearchIndex');
         $articleSearchIndex = new ArticleSearchIndex();
         if (isset($galley)) {
             $articleSearchIndex->articleFileChanged($galley->getArticleId(), SUBMISSION_SEARCH_GALLEY_FILE, $galley->getFileId());
         }
         $articleSearchIndex->articleChangesFinished();
     }
     // Designate this as the review version by default.
     $authorSubmissionDao = DAORegistry::getDAO('AuthorSubmissionDAO');
     $authorSubmission =& $authorSubmissionDao->getAuthorSubmission($articleId);
     import('classes.submission.author.AuthorAction');
     AuthorAction::designateReviewVersion($authorSubmission, true);
     // Accept the submission
     $sectionEditorSubmission =& $sectionEditorSubmissionDao->getSectionEditorSubmission($articleId);
     $articleFileManager = new ArticleFileManager($articleId);
     import('classes.submission.sectionEditor.SectionEditorAction');
     assert(false);
     // FIXME: $decisionLabels missing from call below.
     SectionEditorAction::recordDecision($this->request, $sectionEditorSubmission, SUBMISSION_EDITOR_DECISION_ACCEPT);
     import('classes.author.form.submit.AuthorSubmitForm');
     AuthorSubmitForm::assignEditors($article);
     $articleDao->updateObject($article);
     // Add to end of editing queue
     import('classes.submission.editor.EditorAction');
     if (isset($galley)) {
         EditorAction::expediteSubmission($article, $this->request);
     }
     if ($this->getData('destination') == "issue") {
         // Add to an existing issue
         $issueId = $this->getData('issueId');
         $this->scheduleForPublication($articleId, $issueId);
     }
     // Import the references list.
     $citationDao = DAORegistry::getDAO('CitationDAO');
     $rawCitationList = $article->getCitations();
     $citationDao->importCitations($request, ASSOC_TYPE_ARTICLE, $articleId, $rawCitationList);
     // Index article.
     import('classes.search.ArticleSearchIndex');
     $articleSearchIndex = new ArticleSearchIndex();
     $articleSearchIndex->articleMetadataChanged($article);
     $articleSearchIndex->articleChangesFinished();
 }
Exemplo n.º 18
0
 /**
  * Save changes to paper.
  * @return int the paper ID
  */
 function execute()
 {
     $paperDao =& DAORegistry::getDAO('PaperDAO');
     $authorDao =& DAORegistry::getDAO('AuthorDAO');
     $trackDao =& DAORegistry::getDAO('TrackDAO');
     // Update paper
     $paper =& $this->paper;
     $paper->setTitle($this->getData('title'), null);
     // Localized
     $track =& $trackDao->getTrack($paper->getTrackId());
     $paper->setAbstract($this->getData('abstract'), null);
     // Localized
     $paper->setDiscipline($this->getData('discipline'), null);
     // Localized
     $paper->setSubjectClass($this->getData('subjectClass'), null);
     // Localized
     $paper->setSubject($this->getData('subject'), null);
     // Localized
     $paper->setCoverageGeo($this->getData('coverageGeo'), null);
     // Localized
     $paper->setCoverageChron($this->getData('coverageChron'), null);
     // Localized
     $paper->setCoverageSample($this->getData('coverageSample'), null);
     // Localized
     $paper->setType($this->getData('type'), null);
     // Localized
     $paper->setLanguage($this->getData('language'));
     $paper->setSponsor($this->getData('sponsor'), null);
     // Localized
     $paper->setCitations($this->getData('citations'));
     // Update authors
     $authors = $this->getData('authors');
     for ($i = 0, $count = count($authors); $i < $count; $i++) {
         if ($authors[$i]['authorId'] > 0) {
             // Update an existing author
             $author =& $paper->getAuthor($authors[$i]['authorId']);
             $isExistingAuthor = true;
         } else {
             // Create a new author
             $author = new Author();
             $isExistingAuthor = false;
         }
         if ($author != null) {
             $author->setFirstName($authors[$i]['firstName']);
             $author->setMiddleName($authors[$i]['middleName']);
             $author->setLastName($authors[$i]['lastName']);
             $author->setAffiliation($authors[$i]['affiliation']);
             $author->setCountry($authors[$i]['country']);
             $author->setEmail($authors[$i]['email']);
             $author->setUrl($authors[$i]['url']);
             $author->setBiography($authors[$i]['biography'], null);
             // Localized
             $author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0);
             $author->setSequence($authors[$i]['seq']);
             if ($isExistingAuthor == false) {
                 $paper->addAuthor($author);
             }
         }
     }
     // Remove deleted authors
     $deletedAuthors = explode(':', $this->getData('deletedAuthors'));
     for ($i = 0, $count = count($deletedAuthors); $i < $count; $i++) {
         $paper->removeAuthor($deletedAuthors[$i]);
     }
     // Save the paper
     $paperDao->updatePaper($paper);
     // Update search index
     import('search.PaperSearchIndex');
     PaperSearchIndex::indexPaperMetadata($paper);
     return $paper->getId();
 }