/**
  * Save changes to article.
  * @return int the article ID
  */
 function execute()
 {
     $authorSubmissionDao =& DAORegistry::getDAO('AuthorSubmissionDAO');
     if (isset($this->article)) {
         // Update existing article
         $this->article->setLocale($this->getData('locale'));
         $this->article->setCommentsToEditor($this->getData('commentsToEditor'));
         if ($this->article->getSubmissionProgress() <= $this->step) {
             $this->article->stampStatusModified();
             $this->article->setSubmissionProgress($this->step + 1);
         }
         $lastSectionDecision = $this->article->getLastSectionDecision();
         $lastSectionDecision->setSectionId($this->getData('sectionId'));
         $authorSubmissionDao->updateAuthorSubmission($this->article);
     } else {
         // Insert new article
         $journal =& Request::getJournal();
         $user =& Request::getUser();
         $this->article = new AuthorSubmission();
         $this->article->setLocale($this->getData('locale'));
         $this->article->setUserId($user->getId());
         $this->article->setJournalId($journal->getId());
         $this->article->stampStatusModified();
         $this->article->setSubmissionProgress($this->step + 1);
         $this->article->setLanguage(String::substr($this->article->getLocale(), 0, 2));
         $this->article->setCommentsToEditor($this->getData('commentsToEditor'));
         // Set new Section Decision
         $sectionDecision =& new SectionDecision();
         $sectionDecision->setReviewType(REVIEW_TYPE_INITIAL);
         $sectionDecision->setRound(1);
         $sectionDecision->setSectionId($this->getData('sectionId'));
         $sectionDecision->setDecision(0);
         $sectionDecision->setDateDecided(date(Core::getCurrentDate()));
         $this->article->addDecision($sectionDecision);
         // Set user to initial author
         $author = new Author();
         $author->setFirstName($user->getFirstName());
         $author->setMiddleName($user->getMiddleName());
         $author->setLastName($user->getLastName());
         $author->setAffiliation($user->getLocalizedAffiliation());
         $author->setEmail($user->getEmail());
         $author->setPhoneNumber($user->getPhone());
         $author->setBiography($user->getBiography(null), null);
         $author->setPrimaryContact(1);
         $this->article->addAuthor($author);
         $authorSubmissionDao->insertAuthorSubmission($this->article);
         $this->articleId = $this->article->getId();
     }
     return $this->articleId;
 }
示例#2
0
    /**
     * Retrieve all authors from published papers
     * @param $schedConfId int
     * @return $authors array Author Objects
     */
    function getPublishedPaperAuthors($schedConfId)
    {
        $primaryLocale = AppLocale::getPrimaryLocale();
        $locale = AppLocale::getLocale();
        $authors = array();
        $result =& $this->retrieve('SELECT	aa.*,
				aspl.setting_value AS affiliation_pl,
				asl.setting_value AS affiliation_l
			FROM	authors aa
				LEFT JOIN published_papers pa ON (pa.paper_id = aa.submission_id)
				LEFT JOIN author_settings aspl ON (aspl.author_id = aa.author_id AND aspl.setting_name = ? AND aspl.locale = ?)
				LEFT JOIN author_settings asl ON (asl.author_id = aa.author_id AND asl.setting_name = ? AND asl.locale = ?)
			WHERE	pa.sched_conf_id = ?', array('affiliation', $primaryLocale, 'affiliation', $locale, (int) $schedConfId));
        while (!$result->EOF) {
            $row = $result->GetRowAssoc(false);
            $author = new Author();
            $author->setId($row['author_id']);
            $author->setSubmissionId($row['paper_id']);
            $author->setFirstName($row['first_name']);
            $author->setMiddleName($row['middle_name']);
            $author->setLastName($row['last_name']);
            $author->setAffiliation($row['affiliation_pl'], $primaryLocale);
            $author->setAffiliation($row['affiliation_l'], $locale);
            $author->setEmail($row['email']);
            $author->setBiography($row['biography']);
            $author->setPrimaryContact($row['primary_contact']);
            $author->setSequence($row['seq']);
            $authors[] = $author;
            $result->moveNext();
        }
        $result->Close();
        unset($result);
        return $authors;
    }
示例#3
0
 /**
  * Save settings.
  */
 function execute()
 {
     $articleDao = DAORegistry::getDAO('ArticleDAO');
     $signoffDao = DAORegistry::getDAO('SignoffDAO');
     $sectionEditorSubmissionDao = DAORegistry::getDAO('SectionEditorSubmissionDAO');
     $application = PKPApplication::getApplication();
     $request = $this->request;
     $user = $request->getUser();
     $router = $request->getRouter();
     $journal = $router->getContext($request);
     $article = $articleDao->newDataObject();
     $article->setLocale($journal->getPrimaryLocale());
     // FIXME in bug #5543
     $article->setUserId($user->getId());
     $article->setJournalId($journal->getId());
     $article->setSectionId($this->getData('sectionId'));
     $article->setLanguage($this->getData('language'));
     $article->setTitle($this->getData('title'), null);
     // Localized
     $article->setAbstract($this->getData('abstract'), null);
     // Localized
     $article->setDiscipline($this->getData('discipline'), null);
     // Localized
     $article->setSubjectClass($this->getData('subjectClass'), null);
     // Localized
     $article->setSubject($this->getData('subject'), null);
     // Localized
     $article->setCoverageGeo($this->getData('coverageGeo'), null);
     // Localized
     $article->setCoverageChron($this->getData('coverageChron'), null);
     // Localized
     $article->setCoverageSample($this->getData('coverageSample'), null);
     // Localized
     $article->setType($this->getData('type'), null);
     // Localized
     $article->setSponsor($this->getData('sponsor'), null);
     // Localized
     $article->setCitations($this->getData('citations'));
     $article->setPages($this->getData('pages'));
     // Set some default values so the ArticleDAO doesn't complain when adding this article
     $article->setDateSubmitted(Core::getCurrentDate());
     $article->setStatus(STATUS_PUBLISHED);
     $article->setSubmissionProgress(0);
     $article->stampStatusModified();
     $article->setCurrentRound(1);
     $article->setFastTracked(1);
     $article->setHideAuthor(0);
     $article->setCommentsStatus(0);
     // Insert the article to get it's ID
     $articleDao->insertObject($article);
     $articleId = $article->getId();
     // Add authors
     $authors = $this->getData('authors');
     for ($i = 0, $count = count($authors); $i < $count; $i++) {
         if ($authors[$i]['authorId'] > 0) {
             // Update an existing author
             $author =& $authorDao->getAuthor($authors[$i]['authorId'], $articleId);
             $isExistingAuthor = true;
         } else {
             // Create a new author
             $author = new Author();
             $isExistingAuthor = false;
         }
         if ($author != null) {
             $author->setSubmissionId($articleId);
             $author->setFirstName($authors[$i]['firstName']);
             $author->setMiddleName($authors[$i]['middleName']);
             $author->setLastName($authors[$i]['lastName']);
             if (array_key_exists('affiliation', $authors[$i])) {
                 $author->setAffiliation($authors[$i]['affiliation'], null);
             }
             $author->setCountry($authors[$i]['country']);
             $author->setEmail($authors[$i]['email']);
             $author->setUrl($authors[$i]['url']);
             if (array_key_exists('competingInterests', $authors[$i])) {
                 $author->setCompetingInterests($authors[$i]['competingInterests'], null);
             }
             $author->setBiography($authors[$i]['biography'], null);
             $author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0);
             $author->setSequence($authors[$i]['seq']);
             if ($isExistingAuthor == false) {
                 $authorDao = DAORegistry::getDAO('AuthorDAO');
                 /* @var $authorDao AuthorDAO */
                 $authorDao->insertObject($author);
             }
         }
     }
     // Add the submission files as galleys
     import('lib.pkp.classes.file.TemporaryFileManager');
     import('classes.file.ArticleFileManager');
     $tempFileIds = $this->getData('tempFileId');
     $temporaryFileManager = new TemporaryFileManager();
     $articleFileManager = new ArticleFileManager($articleId);
     $designatedPrimary = false;
     foreach (array_keys($tempFileIds) as $locale) {
         $temporaryFile = $temporaryFileManager->getFile($tempFileIds[$locale], $user->getId());
         $fileId = null;
         if ($temporaryFile) {
             $fileId = $articleFileManager->temporaryFileToArticleFile($temporaryFile, SUBMISSION_FILE_SUBMISSION);
             $fileType = $temporaryFile->getFileType();
             if (strstr($fileType, 'html')) {
                 import('classes.article.ArticleHTMLGalley');
                 $galley = new ArticleHTMLGalley();
             } else {
                 import('classes.article.ArticleGalley');
                 $galley = new ArticleGalley();
             }
             $galley->setArticleId($articleId);
             $galley->setFileId($fileId);
             $galley->setLocale($locale);
             if ($galley->isHTMLGalley()) {
                 $galley->setLabel('HTML');
             } else {
                 if (strstr($fileType, 'pdf')) {
                     $galley->setLabel('PDF');
                 } else {
                     if (strstr($fileType, 'postscript')) {
                         $galley->setLabel('Postscript');
                     } else {
                         if (strstr($fileType, 'xml')) {
                             $galley->setLabel('XML');
                         } else {
                             $galley->setLabel(__('common.untitled'));
                         }
                     }
                 }
             }
             $galleyDao = DAORegistry::getDAO('ArticleGalleyDAO');
             $galleyDao->insertGalley($galley);
             if (!$designatedPrimary) {
                 $article->setSubmissionFileId($fileId);
                 if ($locale == $journal->getPrimaryLocale()) {
                     // Used to make sure that *some* file
                     // is designated Review Version, but
                     // preferrably the primary locale.
                     $designatedPrimary = true;
                 }
             }
         }
         // Update file search index
         import('classes.search.ArticleSearchIndex');
         $articleSearchIndex = new ArticleSearchIndex();
         if (isset($galley)) {
             $articleSearchIndex->articleFileChanged($galley->getArticleId(), SUBMISSION_SEARCH_GALLEY_FILE, $galley->getFileId());
         }
         $articleSearchIndex->articleChangesFinished();
     }
     // Designate this as the review version by default.
     $authorSubmissionDao = DAORegistry::getDAO('AuthorSubmissionDAO');
     $authorSubmission =& $authorSubmissionDao->getAuthorSubmission($articleId);
     import('classes.submission.author.AuthorAction');
     AuthorAction::designateReviewVersion($authorSubmission, true);
     // Accept the submission
     $sectionEditorSubmission =& $sectionEditorSubmissionDao->getSectionEditorSubmission($articleId);
     $articleFileManager = new ArticleFileManager($articleId);
     import('classes.submission.sectionEditor.SectionEditorAction');
     assert(false);
     // FIXME: $decisionLabels missing from call below.
     SectionEditorAction::recordDecision($this->request, $sectionEditorSubmission, SUBMISSION_EDITOR_DECISION_ACCEPT);
     import('classes.author.form.submit.AuthorSubmitForm');
     AuthorSubmitForm::assignEditors($article);
     $articleDao->updateObject($article);
     // Add to end of editing queue
     import('classes.submission.editor.EditorAction');
     if (isset($galley)) {
         EditorAction::expediteSubmission($article, $this->request);
     }
     if ($this->getData('destination') == "issue") {
         // Add to an existing issue
         $issueId = $this->getData('issueId');
         $this->scheduleForPublication($articleId, $issueId);
     }
     // Import the references list.
     $citationDao = DAORegistry::getDAO('CitationDAO');
     $rawCitationList = $article->getCitations();
     $citationDao->importCitations($request, ASSOC_TYPE_ARTICLE, $articleId, $rawCitationList);
     // Index article.
     import('classes.search.ArticleSearchIndex');
     $articleSearchIndex = new ArticleSearchIndex();
     $articleSearchIndex->articleMetadataChanged($article);
     $articleSearchIndex->articleChangesFinished();
 }
 /**
  * Save changes to article.
  * @param $request Request
  * @return int the article ID
  */
 function execute()
 {
     $articleDao =& DAORegistry::getDAO('ArticleDAO');
     $authorDao =& DAORegistry::getDAO('AuthorDAO');
     $article =& $this->article;
     // Retrieve the previous citation list for comparison.
     $previousRawCitationList = $article->getCitations();
     // Update article
     $article->setTitle($this->getData('title'), null);
     // Localized
     $article->setAbstract($this->getData('abstract'), null);
     // Localized
     $article->setDiscipline($this->getData('discipline'), null);
     // Localized
     $article->setSubjectClass($this->getData('subjectClass'), null);
     // Localized
     $article->setSubject($this->getData('subject'), null);
     // Localized
     $article->setCoverageGeo($this->getData('coverageGeo'), null);
     // Localized
     $article->setCoverageChron($this->getData('coverageChron'), null);
     // Localized
     $article->setCoverageSample($this->getData('coverageSample'), null);
     // Localized
     $article->setType($this->getData('type'), null);
     // Localized
     $article->setLanguage($this->getData('language'));
     $article->setSponsor($this->getData('sponsor'), null);
     // Localized
     $article->setCitations($this->getData('citations'));
     if ($article->getSubmissionProgress() <= $this->step) {
         $article->stampStatusModified();
         $article->setSubmissionProgress($this->step + 1);
     }
     // Update authors
     $authors = $this->getData('authors');
     for ($i = 0, $count = count($authors); $i < $count; $i++) {
         if ($authors[$i]['authorId'] > 0) {
             // Update an existing author
             $author =& $authorDao->getAuthor($authors[$i]['authorId'], $article->getId());
             $isExistingAuthor = true;
         } else {
             // Create a new author
             $author = new Author();
             $isExistingAuthor = false;
         }
         if ($author != null) {
             $author->setSubmissionId($article->getId());
             $author->setFirstName($authors[$i]['firstName']);
             $author->setMiddleName($authors[$i]['middleName']);
             $author->setLastName($authors[$i]['lastName']);
             $author->setAffiliation($authors[$i]['affiliation'], null);
             $author->setCountry($authors[$i]['country']);
             $author->setEmail($authors[$i]['email']);
             $author->setData('orcid', $authors[$i]['orcid']);
             $author->setUrl($authors[$i]['url']);
             if (array_key_exists('competingInterests', $authors[$i])) {
                 $author->setCompetingInterests($authors[$i]['competingInterests'], null);
             }
             $author->setBiography($authors[$i]['biography'], null);
             $author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0);
             $author->setSequence($authors[$i]['seq']);
             HookRegistry::call('Author::Form::Submit::AuthorSubmitStep3Form::Execute', array(&$author, &$authors[$i]));
             if ($isExistingAuthor) {
                 $authorDao->updateAuthor($author);
             } else {
                 $authorDao->insertAuthor($author);
             }
         }
         unset($author);
     }
     // Remove deleted authors
     $deletedAuthors = preg_split('/:/', $this->getData('deletedAuthors'), -1, PREG_SPLIT_NO_EMPTY);
     for ($i = 0, $count = count($deletedAuthors); $i < $count; $i++) {
         $authorDao->deleteAuthorById($deletedAuthors[$i], $article->getId());
     }
     parent::execute();
     // Save the article
     $articleDao->updateArticle($article);
     // Update references list if it changed.
     $citationDao =& DAORegistry::getDAO('CitationDAO');
     $rawCitationList = $article->getCitations();
     if ($previousRawCitationList != $rawCitationList) {
         $citationDao->importCitations($this->request, ASSOC_TYPE_ARTICLE, $article->getId(), $rawCitationList);
     }
     return $this->articleId;
 }
示例#5
0
 /**
  * Save changes to article.
  * @param $request PKPRequest
  * @return int the article ID
  */
 function execute(&$request)
 {
     $articleDao =& DAORegistry::getDAO('ArticleDAO');
     $authorDao =& DAORegistry::getDAO('AuthorDAO');
     $sectionDao =& DAORegistry::getDAO('SectionDAO');
     $citationDao =& DAORegistry::getDAO('CitationDAO');
     /* @var $citationDao CitationDAO */
     $article =& $this->article;
     // Retrieve the previous citation list for comparison.
     $previousRawCitationList = $article->getCitations();
     // Update article
     $article->setTitle($this->getData('title'), null);
     // Localized
     $section =& $sectionDao->getSection($article->getSectionId());
     $article->setAbstract($this->getData('abstract'), null);
     // Localized
     import('classes.file.PublicFileManager');
     $publicFileManager = new PublicFileManager();
     if ($publicFileManager->uploadedFileExists(COVER_PAGE_IMAGE_NAME)) {
         $journal = Request::getJournal();
         $originalFileName = $publicFileManager->getUploadedFileName(COVER_PAGE_IMAGE_NAME);
         $type = $publicFileManager->getUploadedFileType(COVER_PAGE_IMAGE_NAME);
         $newFileName = 'cover_article_' . $this->article->getId() . '_' . $this->getFormLocale() . $publicFileManager->getImageExtension($type);
         $publicFileManager->uploadJournalFile($journal->getId(), COVER_PAGE_IMAGE_NAME, $newFileName);
         $article->setOriginalFileName($publicFileManager->truncateFileName($originalFileName, 127), $this->getFormLocale());
         $article->setFileName($newFileName, $this->getFormLocale());
         // Store the image dimensions.
         list($width, $height) = getimagesize($publicFileManager->getJournalFilesPath($journal->getId()) . '/' . $newFileName);
         $article->setWidth($width, $this->getFormLocale());
         $article->setHeight($height, $this->getFormLocale());
     }
     $article->setCoverPageAltText($this->getData('coverPageAltText'), null);
     // Localized
     $showCoverPage = array_map(create_function('$arrayElement', 'return (int)$arrayElement;'), (array) $this->getData('showCoverPage'));
     foreach (array_keys($this->getData('coverPageAltText')) as $locale) {
         if (!array_key_exists($locale, $showCoverPage)) {
             $showCoverPage[$locale] = 0;
         }
     }
     $article->setShowCoverPage($showCoverPage, null);
     // Localized
     $hideCoverPageToc = array_map(create_function('$arrayElement', 'return (int)$arrayElement;'), (array) $this->getData('hideCoverPageToc'));
     foreach (array_keys($this->getData('coverPageAltText')) as $locale) {
         if (!array_key_exists($locale, $hideCoverPageToc)) {
             $hideCoverPageToc[$locale] = 0;
         }
     }
     $article->setHideCoverPageToc($hideCoverPageToc, null);
     // Localized
     $hideCoverPageAbstract = array_map(create_function('$arrayElement', 'return (int)$arrayElement;'), (array) $this->getData('hideCoverPageAbstract'));
     foreach (array_keys($this->getData('coverPageAltText')) as $locale) {
         if (!array_key_exists($locale, $hideCoverPageAbstract)) {
             $hideCoverPageAbstract[$locale] = 0;
         }
     }
     $article->setHideCoverPageAbstract($hideCoverPageAbstract, null);
     // Localized
     $article->setDiscipline($this->getData('discipline'), null);
     // Localized
     $article->setSubjectClass($this->getData('subjectClass'), null);
     // Localized
     $article->setSubject($this->getData('subject'), null);
     // Localized
     $article->setCoverageGeo($this->getData('coverageGeo'), null);
     // Localized
     $article->setCoverageChron($this->getData('coverageChron'), null);
     // Localized
     $article->setCoverageSample($this->getData('coverageSample'), null);
     // Localized
     $article->setType($this->getData('type'), null);
     // Localized
     $article->setLanguage($this->getData('language'));
     // Localized
     $article->setSponsor($this->getData('sponsor'), null);
     // Localized
     $article->setCitations($this->getData('citations'));
     if ($this->isEditor) {
         $article->setHideAuthor($this->getData('hideAuthor') ? $this->getData('hideAuthor') : 0);
     }
     // consider the additional field names from the public identifer plugins
     import('classes.plugins.PubIdPluginHelper');
     $pubIdPluginHelper = new PubIdPluginHelper();
     $pubIdPluginHelper->execute($this, $article);
     // Update authors
     $authors = $this->getData('authors');
     for ($i = 0, $count = count($authors); $i < $count; $i++) {
         if ($authors[$i]['authorId'] > 0) {
             // Update an existing author
             $author =& $authorDao->getAuthor($authors[$i]['authorId'], $article->getId());
             $isExistingAuthor = true;
         } else {
             // Create a new author
             if (checkPhpVersion('5.0.0')) {
                 // *5488* PHP4 Requires explicit instantiation-by-reference
                 $author = new Author();
             } else {
                 $author =& new Author();
             }
             $isExistingAuthor = false;
         }
         if ($author != null) {
             $author->setSubmissionId($article->getId());
             $author->setFirstName($authors[$i]['firstName']);
             $author->setMiddleName($authors[$i]['middleName']);
             $author->setLastName($authors[$i]['lastName']);
             $author->setAffiliation($authors[$i]['affiliation'], null);
             // Localized
             $author->setCountry($authors[$i]['country']);
             $author->setEmail($authors[$i]['email']);
             $author->setData('orcid', $authors[$i]['orcid']);
             $author->setUrl($authors[$i]['url']);
             if (array_key_exists('competingInterests', $authors[$i])) {
                 $author->setCompetingInterests($authors[$i]['competingInterests'], null);
                 // Localized
             }
             $author->setBiography($authors[$i]['biography'], null);
             // Localized
             $author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0);
             $author->setSequence($authors[$i]['seq']);
             HookRegistry::call('Submission::Form::MetadataForm::Execute', array(&$author, &$authors[$i]));
             if ($isExistingAuthor) {
                 $authorDao->updateAuthor($author);
             } else {
                 $authorDao->insertAuthor($author);
             }
             unset($author);
         }
     }
     // Remove deleted authors
     $deletedAuthors = preg_split('/:/', $this->getData('deletedAuthors'), -1, PREG_SPLIT_NO_EMPTY);
     for ($i = 0, $count = count($deletedAuthors); $i < $count; $i++) {
         $authorDao->deleteAuthorById($deletedAuthors[$i], $article->getId());
     }
     if ($this->isEditor) {
         $article->setCopyrightHolder($this->getData('copyrightHolder'), null);
         $article->setCopyrightYear($this->getData('copyrightYear'));
         $article->setLicenseURL($this->getData('licenseURL'));
     }
     parent::execute();
     // Save the article
     $articleDao->updateArticle($article);
     // Update search index
     import('classes.search.ArticleSearchIndex');
     $articleSearchIndex = new ArticleSearchIndex();
     $articleSearchIndex->articleMetadataChanged($article);
     $articleSearchIndex->articleChangesFinished();
     // Update references list if it changed.
     $rawCitationList = $article->getCitations();
     if ($previousRawCitationList != $rawCitationList) {
         $citationDao->importCitations($request, ASSOC_TYPE_ARTICLE, $article->getId(), $rawCitationList);
     }
     return $article->getId();
 }
示例#6
0
 /**
  * Retrieve all authors from published papers
  * @param $schedConfId int
  * @return $authors array Author Objects
  */
 function getPublishedPaperAuthors($schedConfId)
 {
     $authors = array();
     $result =& $this->retrieve('SELECT aa.* FROM paper_authors aa, published_papers pa WHERE aa.paper_id = pa.paper_id AND pa.sched_conf_id = ? ORDER BY pa.sched_conf_id', $schedConfId);
     while (!$result->EOF) {
         $row = $result->GetRowAssoc(false);
         $author = new Author();
         $author->setId($row['author_id']);
         $author->setPaperId($row['paper_id']);
         $author->setFirstName($row['first_name']);
         $author->setMiddleName($row['middle_name']);
         $author->setLastName($row['last_name']);
         $author->setAffiliation($row['affiliation']);
         $author->setEmail($row['email']);
         $author->setBiography($row['biography']);
         $author->setPrimaryContact($row['primary_contact']);
         $author->setSequence($row['seq']);
         $authors[] = $author;
         $result->moveNext();
     }
     $result->Close();
     unset($result);
     return $authors;
 }
示例#7
0
 /**
  * Save author
  * @see Form::execute()
  * @see Form::execute()
  */
 function execute()
 {
     $authorDao = DAORegistry::getDAO('AuthorDAO');
     $submission = $this->getSubmission();
     $author = $this->getAuthor();
     if (!$author) {
         // this is a new submission contributor
         $author = new Author();
         $author->setSubmissionId($submission->getId());
         $existingAuthor = false;
     } else {
         $existingAuthor = true;
         if ($submission->getId() !== $author->getSubmissionId()) {
             fatalError('Invalid author!');
         }
     }
     $author->setFirstName($this->getData('firstName'));
     $author->setMiddleName($this->getData('middleName'));
     $author->setLastName($this->getData('lastName'));
     $author->setSuffix($this->getData('suffix'));
     $author->setAffiliation($this->getData('affiliation'), null);
     // localized
     $author->setCountry($this->getData('country'));
     $author->setEmail($this->getData('email'));
     $author->setUrl($this->getData('userUrl'));
     $author->setOrcid($this->getData('orcid'));
     $author->setUserGroupId($this->getData('userGroupId'));
     $author->setBiography($this->getData('biography'), null);
     // localized
     $author->setPrimaryContact($this->getData('primaryContact') ? true : false);
     $author->setIncludeInBrowse($this->getData('includeInBrowse') ? true : false);
     // in order to be able to use the hook
     parent::execute();
     if ($existingAuthor) {
         $authorDao->updateObject($author);
         $authorId = $author->getId();
     } else {
         $authorId = $authorDao->insertObject($author);
     }
     return $authorId;
 }
示例#8
0
 /**
  * Save changes to article.
  * @return int the article ID
  */
 function execute()
 {
     $articleDao =& DAORegistry::getDAO('ArticleDAO');
     $authorDao =& DAORegistry::getDAO('AuthorDAO');
     $sectionDao =& DAORegistry::getDAO('SectionDAO');
     // Update article
     $article =& $this->article;
     $article->setTitle($this->getData('title'), null);
     // Localized
     $section =& $sectionDao->getSection($article->getSectionId());
     $article->setAbstract($this->getData('abstract'), null);
     // Localized
     import('file.PublicFileManager');
     $publicFileManager = new PublicFileManager();
     if ($publicFileManager->uploadedFileExists('coverPage')) {
         $journal = Request::getJournal();
         $originalFileName = $publicFileManager->getUploadedFileName('coverPage');
         $newFileName = 'cover_article_' . $this->getData('articleId') . '_' . $this->getFormLocale() . '.' . $publicFileManager->getExtension($originalFileName);
         $publicFileManager->uploadJournalFile($journal->getId(), 'coverPage', $newFileName);
         $article->setOriginalFileName($publicFileManager->truncateFileName($originalFileName, 127), $this->getFormLocale());
         $article->setFileName($newFileName, $this->getFormLocale());
         // Store the image dimensions.
         list($width, $height) = getimagesize($publicFileManager->getJournalFilesPath($journal->getId()) . '/' . $newFileName);
         $article->setWidth($width, $this->getFormLocale());
         $article->setHeight($height, $this->getFormLocale());
     }
     $article->setCoverPageAltText($this->getData('coverPageAltText'), null);
     // Localized
     $showCoverPage = array_map(create_function('$arrayElement', 'return (int)$arrayElement;'), (array) $this->getData('showCoverPage'));
     foreach (array_keys($this->getData('coverPageAltText')) as $locale) {
         if (!array_key_exists($locale, $showCoverPage)) {
             $showCoverPage[$locale] = 0;
         }
     }
     $article->setShowCoverPage($showCoverPage, null);
     // Localized
     $hideCoverPageToc = array_map(create_function('$arrayElement', 'return (int)$arrayElement;'), (array) $this->getData('hideCoverPageToc'));
     foreach (array_keys($this->getData('coverPageAltText')) as $locale) {
         if (!array_key_exists($locale, $hideCoverPageToc)) {
             $hideCoverPageToc[$locale] = 0;
         }
     }
     $article->setHideCoverPageToc($hideCoverPageToc, null);
     // Localized
     $hideCoverPageAbstract = array_map(create_function('$arrayElement', 'return (int)$arrayElement;'), (array) $this->getData('hideCoverPageAbstract'));
     foreach (array_keys($this->getData('coverPageAltText')) as $locale) {
         if (!array_key_exists($locale, $hideCoverPageAbstract)) {
             $hideCoverPageAbstract[$locale] = 0;
         }
     }
     $article->setHideCoverPageAbstract($hideCoverPageAbstract, null);
     // Localized
     $article->setDiscipline($this->getData('discipline'), null);
     // Localized
     $article->setSubjectClass($this->getData('subjectClass'), null);
     // Localized
     $article->setSubject($this->getData('subject'), null);
     // Localized
     $article->setCoverageGeo($this->getData('coverageGeo'), null);
     // Localized
     $article->setCoverageChron($this->getData('coverageChron'), null);
     // Localized
     $article->setCoverageSample($this->getData('coverageSample'), null);
     // Localized
     $article->setType($this->getData('type'), null);
     // Localized
     $article->setLanguage($this->getData('language'));
     // Localized
     $article->setSponsor($this->getData('sponsor'), null);
     // Localized
     $article->setCitations($this->getData('citations'));
     if ($this->isEditor) {
         $article->setHideAuthor($this->getData('hideAuthor') ? $this->getData('hideAuthor') : 0);
     }
     // Update authors
     $authors = $this->getData('authors');
     for ($i = 0, $count = count($authors); $i < $count; $i++) {
         if ($authors[$i]['authorId'] > 0) {
             // Update an existing author
             $author =& $article->getAuthor($authors[$i]['authorId']);
             $isExistingAuthor = true;
         } else {
             // Create a new author
             $author = new Author();
             $isExistingAuthor = false;
         }
         if ($author != null) {
             $author->setFirstName($authors[$i]['firstName']);
             $author->setMiddleName($authors[$i]['middleName']);
             $author->setLastName($authors[$i]['lastName']);
             $author->setAffiliation($authors[$i]['affiliation']);
             $author->setCountry($authors[$i]['country']);
             $author->setEmail($authors[$i]['email']);
             $author->setUrl($authors[$i]['url']);
             if (array_key_exists('competingInterests', $authors[$i])) {
                 $author->setCompetingInterests($authors[$i]['competingInterests'], null);
                 // Localized
             }
             $author->setBiography($authors[$i]['biography'], null);
             // Localized
             $author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0);
             $author->setSequence($authors[$i]['seq']);
             if ($isExistingAuthor == false) {
                 $article->addAuthor($author);
             }
         }
     }
     // Remove deleted authors
     $deletedAuthors = explode(':', $this->getData('deletedAuthors'));
     for ($i = 0, $count = count($deletedAuthors); $i < $count; $i++) {
         $article->removeAuthor($deletedAuthors[$i]);
     }
     parent::execute();
     // Save the article
     $articleDao->updateArticle($article);
     // Update search index
     import('search.ArticleSearchIndex');
     ArticleSearchIndex::indexArticleMetadata($article);
     return $article->getId();
 }
 public function testSpeed()
 {
     // Add publisher records
     // ---------------------
     $scholastic = new Publisher();
     $scholastic->setName("Scholastic");
     // do not save, will do later to test cascade
     $morrow = new Publisher();
     $morrow->setName("William Morrow");
     $morrow->save();
     $morrow_id = $morrow->getId();
     $penguin = new Publisher();
     $penguin->setName("Penguin");
     $penguin->save();
     $penguin_id = $penguin->getId();
     $vintage = new Publisher();
     $vintage->setName("Vintage");
     $vintage->save();
     $vintage_id = $vintage->getId();
     // Add author records
     // ------------------
     $rowling = new Author();
     $rowling->setFirstName("J.K.");
     $rowling->setLastName("Rowling");
     // no save()
     $stephenson = new Author();
     $stephenson->setFirstName("Neal");
     $stephenson->setLastName("Stephenson");
     $stephenson->save();
     $stephenson_id = $stephenson->getId();
     $byron = new Author();
     $byron->setFirstName("George");
     $byron->setLastName("Byron");
     $byron->save();
     $byron_id = $byron->getId();
     $grass = new Author();
     $grass->setFirstName("Gunter");
     $grass->setLastName("Grass");
     $grass->save();
     $grass_id = $grass->getId();
     // Add book records
     // ----------------
     $phoenix = new Book();
     $phoenix->setTitle("Harry Potter and the Order of the Phoenix");
     $phoenix->setISBN("043935806X");
     // cascading save (Harry Potter)
     $phoenix->setAuthor($rowling);
     $phoenix->setPublisher($scholastic);
     $phoenix->save();
     $phoenix_id = $phoenix->getId();
     $qs = new Book();
     $qs->setISBN("0380977427");
     $qs->setTitle("Quicksilver");
     $qs->setAuthor($stephenson);
     $qs->setPublisher($morrow);
     $qs->save();
     $qs_id = $qs->getId();
     $dj = new Book();
     $dj->setISBN("0140422161");
     $dj->setTitle("Don Juan");
     $dj->setAuthor($byron);
     $dj->setPublisher($penguin);
     $dj->save();
     $dj_id = $qs->getId();
     $td = new Book();
     $td->setISBN("067972575X");
     $td->setTitle("The Tin Drum");
     $td->setAuthor($grass);
     $td->setPublisher($vintage);
     $td->save();
     $td_id = $td->getId();
     // Add review records
     // ------------------
     $r1 = new Review();
     $r1->setBook($phoenix);
     $r1->setReviewedBy("Washington Post");
     $r1->setRecommended(true);
     $r1->setReviewDate(time());
     $r1->save();
     $r1_id = $r1->getId();
     $r2 = new Review();
     $r2->setBook($phoenix);
     $r2->setReviewedBy("New York Times");
     $r2->setRecommended(false);
     $r2->setReviewDate(time());
     $r2->save();
     $r2_id = $r2->getId();
     // Perform a "complex" search
     // --------------------------
     $crit = new Criteria();
     $crit->add(BookPeer::TITLE, 'Harry%', Criteria::LIKE);
     $results = BookPeer::doSelect($crit);
     $crit2 = new Criteria();
     $crit2->add(BookPeer::ISBN, array("0380977427", "0140422161"), Criteria::IN);
     $results = BookPeer::doSelect($crit2);
     // Perform a "limit" search
     // ------------------------
     $crit = new Criteria();
     $crit->setLimit(2);
     $crit->setOffset(1);
     $crit->addAscendingOrderByColumn(BookPeer::TITLE);
     $results = BookPeer::doSelect($crit);
     // Perform a lookup & update!
     // --------------------------
     $qs_lookup = BookPeer::retrieveByPk($qs_id);
     $new_title = "Quicksilver (" . crc32(uniqid(rand())) . ")";
     $qs_lookup->setTitle($new_title);
     $qs_lookup->save();
     $qs_lookup2 = BookPeer::retrieveByPk($qs_id);
     // Test some basic DATE / TIME stuff
     // ---------------------------------
     // that's the control timestamp.
     $control = strtotime('2004-02-29 00:00:00');
     // should be two in the db
     $r = ReviewPeer::doSelectOne(new Criteria());
     $r_id = $r->getId();
     $r->setReviewDate($control);
     $r->save();
     $r2 = ReviewPeer::retrieveByPk($r_id);
     // Testing the DATE/TIME columns
     // -----------------------------
     // that's the control timestamp.
     $control = strtotime('2004-02-29 00:00:00');
     // should be two in the db
     $r = ReviewPeer::doSelectOne(new Criteria());
     $r_id = $r->getId();
     $r->setReviewDate($control);
     $r->save();
     $r2 = ReviewPeer::retrieveByPk($r_id);
     // Testing the column validators
     // -----------------------------
     $bk1 = new Book();
     $bk1->setTitle("12345");
     // min length is 10
     $ret = $bk1->validate();
     // Unique validator
     $bk2 = new Book();
     $bk2->setTitle("Don Juan");
     $ret = $bk2->validate();
     // Now trying some more complex validation.
     $auth1 = new Author();
     $auth1->setFirstName("Hans");
     // last name required; will fail
     $bk1->setAuthor($auth1);
     $rev1 = new Review();
     $rev1->setReviewDate("08/09/2001");
     // will fail: reviewed_by column required
     $bk1->addReview($rev1);
     $ret2 = $bk1->validate();
     $bk2 = new Book();
     $bk2->setTitle("12345678901");
     // passes
     $auth2 = new Author();
     $auth2->setLastName("Blah");
     //passes
     $auth2->setEmail("*****@*****.**");
     //passes
     $auth2->setAge(50);
     //passes
     $bk2->setAuthor($auth2);
     $rev2 = new Review();
     $rev2->setReviewedBy("Me!");
     // passes
     $rev2->setStatus("new");
     // passes
     $bk2->addReview($rev2);
     $ret3 = $bk2->validate();
     // Testing doCount() functionality
     // -------------------------------
     $c = new Criteria();
     $count = BookPeer::doCount($c);
     // Testing many-to-many relationships
     // ----------------------------------
     // init book club list 1 with 2 books
     $blc1 = new BookClubList();
     $blc1->setGroupLeader("Crazyleggs");
     $blc1->setTheme("Happiness");
     $brel1 = new BookListRel();
     $brel1->setBook($phoenix);
     $brel2 = new BookListRel();
     $brel2->setBook($dj);
     $blc1->addBookListRel($brel1);
     $blc1->addBookListRel($brel2);
     $blc1->save();
     // init book club list 2 with 1 book
     $blc2 = new BookClubList();
     $blc2->setGroupLeader("John Foo");
     $blc2->setTheme("Default");
     $brel3 = new BookListRel();
     $brel3->setBook($phoenix);
     $blc2->addBookListRel($brel3);
     $blc2->save();
     // re-fetch books and lists from db to be sure that nothing is cached
     $crit = new Criteria();
     $crit->add(BookPeer::ID, $phoenix->getId());
     $phoenix = BookPeer::doSelectOne($crit);
     $crit = new Criteria();
     $crit->add(BookClubListPeer::ID, $blc1->getId());
     $blc1 = BookClubListPeer::doSelectOne($crit);
     $crit = new Criteria();
     $crit->add(BookClubListPeer::ID, $blc2->getId());
     $blc2 = BookClubListPeer::doSelectOne($crit);
     $relCount = $phoenix->countBookListRels();
     $relCount = $blc1->countBookListRels();
     $relCount = $blc2->countBookListRels();
     // Removing books that were just created
     // -------------------------------------
     $hp = BookPeer::retrieveByPk($phoenix_id);
     $c = new Criteria();
     $c->add(BookPeer::ID, $hp->getId());
     // The only way for cascading to work currently
     // is to specify the author_id and publisher_id (i.e. the fkeys
     // have to be in the criteria).
     $c->add(AuthorPeer::ID, $hp->getId());
     $c->add(PublisherPeer::ID, $hp->getId());
     $c->setSingleRecord(true);
     BookPeer::doDelete($c);
     // Attempting to delete books by complex criteria
     $c = new Criteria();
     $cn = $c->getNewCriterion(BookPeer::ISBN, "043935806X");
     $cn->addOr($c->getNewCriterion(BookPeer::ISBN, "0380977427"));
     $cn->addOr($c->getNewCriterion(BookPeer::ISBN, "0140422161"));
     $c->add($cn);
     BookPeer::doDelete($c);
     $td->delete();
     AuthorPeer::doDelete($stephenson_id);
     AuthorPeer::doDelete($byron_id);
     $grass->delete();
     PublisherPeer::doDelete($morrow_id);
     PublisherPeer::doDelete($penguin_id);
     $vintage->delete();
     // These have to be deleted manually also since we have onDelete
     // set to SETNULL in the foreign keys in book. Is this correct?
     $rowling->delete();
     $scholastic->delete();
     $blc1->delete();
     $blc2->delete();
 }
示例#10
0
    /**
     * Retrieve all authors from published articles
     * @param $issueId int
     * @return $authors array Author Objects
     */
    function getPublishedArticleAuthors($issueId)
    {
        $primaryLocale = Locale::getPrimaryLocale();
        $locale = Locale::getLocale();
        $authors = array();
        $result =& $this->retrieve('SELECT	aa.*
			FROM	authors aa
				LEFT JOIN published_articles pa ON (pa.article_id = aa.submission_id)
			WHERE	pa.issue_id = ? ORDER BY pa.issue_id', (int) $issueId);
        while (!$result->EOF) {
            $row = $result->GetRowAssoc(false);
            $author = new Author();
            $author->setId($row['author_id']);
            $author->setSubmissionId($row['article_id']);
            $author->setFirstName($row['first_name']);
            $author->setMiddleName($row['middle_name']);
            $author->setLastName($row['last_name']);
            $author->setAffiliation($row['affiliation_pl'], $primaryLocale);
            $author->setAffiliation($row['affiliation_l'], $locale);
            $author->setEmail($row['email']);
            $author->setBiography($row['biography']);
            $author->setPrimaryContact($row['primary_contact']);
            $author->setSequence($row['seq']);
            $authors[] = $author;
            $result->moveNext();
        }
        $result->Close();
        unset($result);
        return $authors;
    }
示例#11
0
 /**
  * Internal function to return an Author object from a row.
  * @param $row array
  * @return Author
  */
 function &_returnAuthorFromRow(&$row)
 {
     $author = new Author();
     $author->setId($row['author_id']);
     $author->setPaperId($row['paper_id']);
     $author->setFirstName($row['first_name']);
     $author->setMiddleName($row['middle_name']);
     $author->setLastName($row['last_name']);
     $author->setAffiliation($row['affiliation']);
     $author->setCountry($row['country']);
     $author->setEmail($row['email']);
     $author->setUrl($row['url']);
     $author->setPrimaryContact($row['primary_contact']);
     $author->setSequence($row['seq']);
     $this->getDataObjectSettings('paper_author_settings', 'author_id', $row['author_id'], $author);
     HookRegistry::call('AuthorDAO::_returnAuthorFromRow', array(&$author, &$row));
     return $author;
 }
 /**
  * Save changes to article.
  * @return int the article ID
  */
 function execute()
 {
     $articleDao =& DAORegistry::getDAO('ArticleDAO');
     $authorDao =& DAORegistry::getDAO('AuthorDAO');
     // Update article
     $article =& $this->article;
     $article->setTitle($this->getData('title'), null);
     // Localized
     $article->setAbstract($this->getData('abstract'), null);
     // Localized
     $article->setDiscipline($this->getData('discipline'), null);
     // Localized
     $article->setSubjectClass($this->getData('subjectClass'), null);
     // Localized
     $article->setSubject($this->getData('subject'), null);
     // Localized
     $article->setCoverageGeo($this->getData('coverageGeo'), null);
     // Localized
     $article->setCoverageChron($this->getData('coverageChron'), null);
     // Localized
     $article->setCoverageSample($this->getData('coverageSample'), null);
     // Localized
     $article->setType($this->getData('type'), null);
     // Localized
     $article->setLanguage($this->getData('language'));
     $article->setSponsor($this->getData('sponsor'), null);
     // Localized
     $article->setCitations($this->getData('citations'));
     if ($article->getSubmissionProgress() <= $this->step) {
         $article->stampStatusModified();
         $article->setSubmissionProgress($this->step + 1);
     }
     // Update authors
     $authors = $this->getData('authors');
     for ($i = 0, $count = count($authors); $i < $count; $i++) {
         if ($authors[$i]['authorId'] > 0) {
             // Update an existing author
             $author =& $article->getAuthor($authors[$i]['authorId']);
             $isExistingAuthor = true;
         } else {
             // Create a new author
             $author = new Author();
             $isExistingAuthor = false;
         }
         if ($author != null) {
             $author->setArticleId($article->getId());
             $author->setFirstName($authors[$i]['firstName']);
             $author->setMiddleName($authors[$i]['middleName']);
             $author->setLastName($authors[$i]['lastName']);
             $author->setAffiliation($authors[$i]['affiliation']);
             $author->setCountry($authors[$i]['country']);
             $author->setEmail($authors[$i]['email']);
             $author->setUrl($authors[$i]['url']);
             if (array_key_exists('competingInterests', $authors[$i])) {
                 $author->setCompetingInterests($authors[$i]['competingInterests'], null);
             }
             $author->setBiography($authors[$i]['biography'], null);
             $author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0);
             $author->setSequence($authors[$i]['seq']);
             if ($isExistingAuthor == false) {
                 $article->addAuthor($author);
             }
         }
         unset($author);
     }
     // Remove deleted authors
     $deletedAuthors = explode(':', $this->getData('deletedAuthors'));
     for ($i = 0, $count = count($deletedAuthors); $i < $count; $i++) {
         $article->removeAuthor($deletedAuthors[$i]);
     }
     parent::execute();
     // Save the article
     $articleDao->updateArticle($article);
     return $this->articleId;
 }
 /**
  * Save settings.
  */
 function execute($editArticleId)
 {
     $this->editArticleID = $editArticleId;
     $articleDao =& DAORegistry::getDAO('ArticleDAO');
     $signoffDao =& DAORegistry::getDAO('SignoffDAO');
     $sectionEditorSubmissionDao =& DAORegistry::getDAO('SectionEditorSubmissionDAO');
     $application =& PKPApplication::getApplication();
     $request =& $application->getRequest();
     $user =& $request->getUser();
     $router =& $request->getRouter();
     $journal =& $router->getContext($request);
     $article = new Article();
     $article->setLocale($journal->getPrimaryLocale());
     // FIXME in bug #5543
     $article->setUserId($user->getId());
     $article->setJournalId($journal->getId());
     $article->setSectionId($this->getData('sectionId'));
     $article->setLanguage(String::substr($journal->getPrimaryLocale(), 0, 2));
     $article->setTitle($this->getData('title'), null);
     // Localized
     //add Original Journal to Abstract
     $orig_journal = $this->getData('originalJournal');
     $abstr = $this->getData('abstract');
     foreach (array_keys($abstr) as $abs_key) {
         $abstr[$abs_key] .= '  <p id="originalPub"> ' . $orig_journal . ' </p> ';
         //		$abstr[$abs_key] .=  '  <p id="originalPub"> ' . $orig_journal[$abs_key]. ' </p> ';
         //OriginalJournal in EditPlugin only a string and not an array...
         $this->setData('abstract', $abstr);
     }
     $article->setAbstract($this->getData('abstract'), null);
     // Localized
     $article->setDiscipline($this->getData('discipline'), null);
     // Localized
     $article->setSubjectClass($this->getData('subjectClass'), null);
     // Localized
     $article->setSubject($this->getData('subject'), null);
     // Localized
     $article->setCoverageGeo($this->getData('coverageGeo'), null);
     // Localized
     $article->setCoverageChron($this->getData('coverageChron'), null);
     // Localized
     $article->setCoverageSample($this->getData('coverageSample'), null);
     // Localized
     $article->setType($this->getData('type'), null);
     // Localized
     $article->setSponsor($this->getData('sponsor'), null);
     // Localized
     $article->setCitations($this->getData('citations'));
     $article->setPages($this->getData('pages'));
     // Set some default values so the ArticleDAO doesn't complain when adding this article
     $article->setDateSubmitted(Core::getCurrentDate());
     $article->setStatus(STATUS_PUBLISHED);
     $article->setSubmissionProgress(0);
     $article->stampStatusModified();
     $article->setCurrentRound(1);
     $article->setFastTracked(1);
     $article->setHideAuthor(0);
     $article->setCommentsStatus(0);
     // As article has an ID already set it
     $article->setId($this->editArticleID);
     $articleId = $this->editArticleID;
     //delete prior Authors to prevent from double saving the same authors
     $authorDao =& DAORegistry::getDAO('AuthorDAO');
     $authorDao->deleteAuthorsByArticle($articleId);
     // Add authors
     $authors = $this->getData('authors');
     for ($i = 0, $count = count($authors); $i < $count; $i++) {
         if ($authors[$i]['authorId'] > 0) {
             // Update an existing author
             $author =& $article->getAuthor($authors[$i]['authorId']);
             $isExistingAuthor = true;
         } else {
             // Create a new author
             $author = new Author();
             $isExistingAuthor = false;
         }
         if ($author != null) {
             $author->setSubmissionId($articleId);
             $author->setFirstName($authors[$i]['firstName']);
             $author->setMiddleName($authors[$i]['middleName']);
             $author->setLastName($authors[$i]['lastName']);
             if (array_key_exists('affiliation', $authors[$i])) {
                 $author->setAffiliation($authors[$i]['affiliation'], null);
             }
             $author->setCountry($authors[$i]['country']);
             $author->setEmail($authors[$i]['email']);
             $author->setUrl($authors[$i]['url']);
             if (array_key_exists('competingInterests', $authors[$i])) {
                 $author->setCompetingInterests($authors[$i]['competingInterests'], null);
             }
             $author->setBiography($authors[$i]['biography'], null);
             $author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0);
             $author->setSequence($authors[$i]['seq']);
             if ($isExistingAuthor == false) {
                 $article->addAuthor($author);
             }
         }
     }
     // Check whether the user gave a handle and create a handleSubmissionFile in case
     $submissionHandle = $this->getData('submissionHandle');
     $handleSubmissionFileId;
     $handleCheck = FALSE;
     //import FileManager before creating files because otherwise naming of the copied files failes
     import('classes.file.ArticleFileManager');
     foreach (array_keys($submissionHandle) as $locale) {
         if (!empty($submissionHandle[$locale])) {
             $this->deleteOldFile("submission/original", $articleId);
             // $this->deleteOldFile("submission/copyedit", $articleId);
             $handleCheck = TRUE;
             $handleSubmissionId = $this->createHandleTXTFile($submissionHandle[$locale], $articleId, 'submission');
             $handleSubmissionPDFId = $this->createHandlePDF($submissionHandle[$locale], $articleId, 'submission');
             //Add the handle submission files as galley
             $this->setGalley($articleId, $handleSubmissionPDFId, $locale, 'application/pdf');
         }
         if ($handleCheck == TRUE) {
             if ($locale == $journal->getPrimaryLocale()) {
                 $article->setSubmissionFileId($handleSubmissionPDFId);
                 $article->SetReviewFileId($handleSubmissionPDFId);
             }
             // Update file search index
             import('classes.search.ArticleSearchIndex');
             if (isset($galley)) {
                 ArticleSearchIndex::updateFileIndex($galley->getArticleId(), ARTICLE_SEARCH_GALLEY_FILE, $galley->getFileId());
             }
         }
     }
     // Add the submission files as galleys
     import('classes.file.TemporaryFileManager');
     import('classes.file.ArticleFileManager');
     $tempFileIds = $this->getData('tempFileId');
     $temporaryFileManager = new TemporaryFileManager();
     $articleFileManager = new ArticleFileManager($articleId);
     $tempFileCheck = FALSE;
     foreach (array_keys($tempFileIds) as $locale) {
         $temporaryFile = $temporaryFileManager->getFile($tempFileIds[$locale], $user->getId());
         $fileId = null;
         if ($temporaryFile) {
             $this->deleteOldFile("submission/original", $articleId);
             $this->deleteOldFile("submission/copyedit", $articleId);
             $tempFileCheck = TRUE;
             $fileId = $articleFileManager->temporaryFileToArticleFile($temporaryFile, ARTICLE_FILE_SUBMISSION);
             $fileType = $temporaryFile->getFileType();
             $this->setGalley($articleId, $fileId, $locale, $fileType);
             // $galley =& $this->setGalley($articleId, $fileId, $locale, $fileType);
         }
         if ($tempFileCheck == TRUE) {
             if ($locale == $journal->getPrimaryLocale()) {
                 $article->setSubmissionFileId($fileId);
                 $article->SetReviewFileId($fileId);
             }
             // Update file search index
             import('classes.search.ArticleSearchIndex');
             if (isset($galley)) {
                 ArticleSearchIndex::updateFileIndex($galley->getArticleId(), ARTICLE_SEARCH_GALLEY_FILE, $galley->getFileId());
             }
         }
     }
     //Check whether the user gave a handle and create handleSupplFile in case
     $supplHandle = $this->getData('supplHandle');
     $handleSuppFileId = null;
     foreach (array_keys($supplHandle) as $locale) {
         if (!empty($supplHandle[$locale])) {
             $this->deleteOldFile("supp", $articleId);
             $handleSuppFileId = $this->createHandleTXTFile($supplHandle[$locale], $articleId, 'supplementary');
             $handleSupplPDFFileID = $this->createHandlePDF($submissionHandle[$locale], $articleId, 'supplementary');
         }
     }
     //Add uploaded Supplementary file
     $tempSupplFileIds = $this->getData('tempSupplFileId');
     foreach (array_keys($tempSupplFileIds) as $locale) {
         $temporaryFile = $temporaryFileManager->getFile($tempSupplFileIds[$locale], $user->getId());
         $fileId = null;
         if ($temporaryFile) {
             $this->deleteOldFile("supp", $articleId);
             $fileId = $articleFileManager->temporaryFileToArticleFile($temporaryFile, ARTICLE_FILE_SUPP);
             $fileType = $temporaryFile->getFileType();
         }
     }
     // Designate this as the review version by default.
     /*$authorSubmissionDao =& DAORegistry::getDAO('AuthorSubmissionDAO');
     		$authorSubmission =& $authorSubmissionDao->getAuthorSubmission($articleId);
     		import('classes.submission.author.AuthorAction');
     		AuthorAction::designateReviewVersion($authorSubmission, true);
     */
     // Accept the submission
     /*$sectionEditorSubmission =& $sectionEditorSubmissionDao->getSectionEditorSubmission($articleId);
     		$articleFileManager = new ArticleFileManager($articleId);
     		$sectionEditorSubmission->setReviewFile($articleFileManager->getFile($article->getSubmissionFileId()));
     		import('classes.submission.sectionEditor.SectionEditorAction');
     		SectionEditorAction::recordDecision($sectionEditorSubmission, SUBMISSION_EDITOR_DECISION_ACCEPT);
     */
     // Create signoff infrastructure
     $copyeditInitialSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_INITIAL', ASSOC_TYPE_ARTICLE, $articleId);
     $copyeditAuthorSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_AUTHOR', ASSOC_TYPE_ARTICLE, $articleId);
     $copyeditFinalSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_FINAL', ASSOC_TYPE_ARTICLE, $articleId);
     $copyeditInitialSignoff->setUserId(0);
     $copyeditAuthorSignoff->setUserId($user->getId());
     $copyeditFinalSignoff->setUserId(0);
     $signoffDao->updateObject($copyeditInitialSignoff);
     $signoffDao->updateObject($copyeditAuthorSignoff);
     $signoffDao->updateObject($copyeditFinalSignoff);
     $layoutSignoff = $signoffDao->build('SIGNOFF_LAYOUT', ASSOC_TYPE_ARTICLE, $articleId);
     $layoutSignoff->setUserId(0);
     $signoffDao->updateObject($layoutSignoff);
     $proofAuthorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_AUTHOR', ASSOC_TYPE_ARTICLE, $articleId);
     $proofProofreaderSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_PROOFREADER', ASSOC_TYPE_ARTICLE, $articleId);
     $proofLayoutEditorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_LAYOUT', ASSOC_TYPE_ARTICLE, $articleId);
     $proofAuthorSignoff->setUserId($user->getId());
     $proofProofreaderSignoff->setUserId(0);
     $proofLayoutEditorSignoff->setUserId(0);
     $signoffDao->updateObject($proofAuthorSignoff);
     $signoffDao->updateObject($proofProofreaderSignoff);
     $signoffDao->updateObject($proofLayoutEditorSignoff);
     import('classes.author.form.submit.AuthorSubmitForm');
     AuthorSubmitForm::assignEditors($article);
     $articleDao->updateArticle($article);
     // Add to end of editing queue
     import('classes.submission.editor.EditorAction');
     if (isset($galley)) {
         EditorAction::expediteSubmission($article);
     }
     // As the article already has an issue, just get it from database
     $issueDao =& DAORegistry::getDAO('IssueDAO');
     $issue =& $issueDao->getIssueByArticleId($this->editArticleID);
     $issueId = $issue->getIssueId();
     //$this->scheduleForPublication($articleId, $issueId);
     // Index article.
     import('classes.search.ArticleSearchIndex');
     ArticleSearchIndex::indexArticleMetadata($article);
     // Import the references list.
     $citationDao =& DAORegistry::getDAO('CitationDAO');
     $rawCitationList = $article->getCitations();
     $citationDao->importCitations($request, ASSOC_TYPE_ARTICLE, $articleId, $rawCitationList);
 }
 /**
  * Save submissionContributor
  * @see Form::execute()
  * @see Form::execute()
  */
 function execute()
 {
     $authorDao =& DAORegistry::getDAO('AuthorDAO');
     $monograph = $this->getMonograph();
     $submissionContributor =& $this->getSubmissionContributor();
     if (!$submissionContributor) {
         // this is a new submission contributor
         $submissionContributor = new Author();
         $submissionContributor->setMonographId($monograph->getId());
         $existingSubmissionContributor = false;
     } else {
         $existingSubmissionContributor = true;
     }
     assert($monograph->getId() == $submissionContributor->getMonographId());
     $submissionContributor->setFirstName($this->getData('firstName'));
     $submissionContributor->setMiddleName($this->getData('middleName'));
     $submissionContributor->setLastName($this->getData('lastName'));
     $submissionContributor->setAffiliation($this->getData('affiliation'), Locale::getLocale());
     // localized
     $submissionContributor->setCountry($this->getData('country'));
     $submissionContributor->setEmail($this->getData('email'));
     $submissionContributor->setUrl($this->getData('url'));
     $submissionContributor->setUserGroupId($this->getData('userGroupId'));
     $submissionContributor->setBiography($this->getData('biography'), Locale::getLocale());
     // localized
     $submissionContributor->setPrimaryContact($this->getData('primaryContact') ? true : false);
     if ($existingSubmissionContributor) {
         $authorDao->updateAuthor($submissionContributor);
         $authorId = $submissionContributor->getId();
     } else {
         $authorId = $authorDao->insertAuthor($submissionContributor);
     }
     return $authorId;
 }
示例#15
0
 /**
  * @covers OAIMetadataFormat_DC
  * @covers Dc11SchemaArticleAdapter
  */
 public function testToXml()
 {
     $this->markTestSkipped('Skipped because of weird class interaction with ControlledVocabDAO.');
     //
     // Create test data.
     //
     $journalId = 1;
     // Enable the DOI plugin.
     $pluginSettingsDao = DAORegistry::getDAO('PluginSettingsDAO');
     /* @var $pluginSettingsDao PluginSettingsDAO */
     $pluginSettingsDao->updateSetting($journalId, 'doipubidplugin', 'enabled', 1);
     $pluginSettingsDao->updateSetting($journalId, 'doipubidplugin', 'enableIssueDoi', 1);
     $pluginSettingsDao->updateSetting($journalId, 'doipubidplugin', 'enableArticleDoi', 1);
     $pluginSettingsDao->updateSetting($journalId, 'doipubidplugin', 'enableGalleyDoi', 1);
     // Author
     import('classes.article.Author');
     $author = new Author();
     $author->setFirstName('author-firstname');
     $author->setLastName('author-lastname');
     $author->setAffiliation('author-affiliation', 'en_US');
     $author->setEmail('*****@*****.**');
     // Article
     import('classes.article.PublishedArticle');
     $article = $this->getMock('PublishedArticle', array('getBestArticleId'));
     /* @var $article PublishedArticle */
     $article->expects($this->any())->method('getBestArticleId')->will($this->returnValue(9));
     $article->setId(9);
     $article->setJournalId($journalId);
     $author->setSubmissionId($article->getId());
     $article->setPages(15);
     $article->setType('art-type', 'en_US');
     $article->setTitle('article-title-en', 'en_US');
     $article->setTitle('article-title-de', 'de_DE');
     $article->setDiscipline('article-discipline', 'en_US');
     $article->setSubject('article-subject', 'en_US');
     $article->setAbstract('article-abstract', 'en_US');
     $article->setSponsor('article-sponsor', 'en_US');
     $article->setStoredPubId('doi', 'article-doi');
     $article->setLanguage('en_US');
     // Galleys
     import('classes.article.ArticleGalley');
     $galley = new ArticleGalley();
     $galley->setId(98);
     $galley->setStoredPubId('doi', 'galley-doi');
     $galleys = array($galley);
     // Journal
     import('classes.journal.Journal');
     $journal = $this->getMock('Journal', array('getSetting'));
     /* @var $journal Journal */
     $journal->expects($this->any())->method('getSetting')->will($this->returnCallback(array($this, 'getJournalSetting')));
     $journal->setPrimaryLocale('en_US');
     $journal->setPath('journal-path');
     $journal->setId($journalId);
     // Section
     import('classes.journal.Section');
     $section = new Section();
     $section->setIdentifyType('section-identify-type', 'en_US');
     // Issue
     import('classes.issue.Issue');
     $issue = $this->getMock('Issue', array('getIssueIdentification'));
     /* @var $issue Issue */
     $issue->expects($this->any())->method('getIssueIdentification')->will($this->returnValue('issue-identification'));
     $issue->setId(96);
     $issue->setDatePublished('2010-11-05');
     $issue->setStoredPubId('doi', 'issue-doi');
     $issue->setJournalId($journalId);
     //
     // Create infrastructural support objects
     //
     // Router
     import('lib.pkp.classes.core.PKPRouter');
     $router = $this->getMock('PKPRouter', array('url'));
     $application = PKPApplication::getApplication();
     $router->setApplication($application);
     $router->expects($this->any())->method('url')->will($this->returnCallback(array($this, 'routerUrl')));
     // Request
     import('classes.core.Request');
     $request = $this->getMock('Request', array('getRouter'));
     $request->expects($this->any())->method('getRouter')->will($this->returnValue($router));
     Registry::set('request', $request);
     //
     // Create mock DAOs
     //
     // Create a mocked AuthorDAO that returns our test author.
     import('classes.article.AuthorDAO');
     $authorDao = $this->getMock('AuthorDAO', array('getBySubmissionId'));
     $authorDao->expects($this->any())->method('getBySubmissionId')->will($this->returnValue(array($author)));
     DAORegistry::registerDAO('AuthorDAO', $authorDao);
     // Create a mocked OAIDAO that returns our test data.
     import('classes.oai.ojs.OAIDAO');
     $oaiDao = $this->getMock('OAIDAO', array('getJournal', 'getSection', 'getIssue'));
     $oaiDao->expects($this->any())->method('getJournal')->will($this->returnValue($journal));
     $oaiDao->expects($this->any())->method('getSection')->will($this->returnValue($section));
     $oaiDao->expects($this->any())->method('getIssue')->will($this->returnValue($issue));
     DAORegistry::registerDAO('OAIDAO', $oaiDao);
     // Create a mocked ArticleGalleyDAO that returns our test data.
     import('classes.article.ArticleGalleyDAO');
     $articleGalleyDao = $this->getMock('ArticleGalleyDAO', array('getBySubmissionId'));
     $articleGalleyDao->expects($this->any())->method('getBySubmissionId')->will($this->returnValue($galleys));
     DAORegistry::registerDAO('ArticleGalleyDAO', $articleGalleyDao);
     // FIXME: ArticleGalleyDAO::getBySubmissionId returns iterator; array expected here. Fix expectations.
     // Create a mocked PublishedArticleDAO that returns our test article.
     import('classes.article.PublishedArticleDAO');
     $articleDao = $this->getMock('PublishedArticleDAO', array('getPublishedArticleByArticleId'));
     $articleDao->expects($this->any())->method('getPublishedArticleByArticleId')->will($this->returnValue($article));
     DAORegistry::registerDAO('PublishedArticleDAO', $articleDao);
     //
     // Test
     //
     // OAI record
     $record = new OAIRecord();
     $record->setData('article', $article);
     $record->setData('galleys', $galleys);
     $record->setData('journal', $journal);
     $record->setData('section', $section);
     $record->setData('issue', $issue);
     // Instantiate the OAI meta-data format.
     $prefix = OAIMetadataFormatPlugin_DC::getMetadataPrefix();
     $schema = OAIMetadataFormatPlugin_DC::getSchema();
     $namespace = OAIMetadataFormatPlugin_DC::getNamespace();
     $mdFormat = new OAIMetadataFormat_DC($prefix, $schema, $namespace);
     $xml = $mdFormat->toXml($record);
     self::assertXmlStringEqualsXmlFile('tests/plugins/oaiMetadataFormats/dc/expectedResult.xml', $xml);
 }
 /**
  * Save settings.
  */
 function execute()
 {
     $articleDao =& DAORegistry::getDAO('ArticleDAO');
     $signoffDao =& DAORegistry::getDAO('SignoffDAO');
     $sectionEditorSubmissionDao =& DAORegistry::getDAO('SectionEditorSubmissionDAO');
     $application =& PKPApplication::getApplication();
     $request =& $application->getRequest();
     $user =& $request->getUser();
     $router =& $request->getRouter();
     $journal =& $router->getContext($request);
     $article = new Article();
     $article->setLocale($journal->getPrimaryLocale());
     // FIXME in bug #5543
     $article->setUserId($user->getId());
     $article->setJournalId($journal->getId());
     $article->setSectionId($this->getData('sectionId'));
     $article->setLanguage(String::substr($journal->getPrimaryLocale(), 0, 2));
     $article->setTitle($this->getData('title'), null);
     // Localized
     $article->setAbstract($this->getData('abstract'), null);
     // Localized
     $article->setDiscipline($this->getData('discipline'), null);
     // Localized
     $article->setSubjectClass($this->getData('subjectClass'), null);
     // Localized
     $article->setSubject($this->getData('subject'), null);
     // Localized
     $article->setCoverageGeo($this->getData('coverageGeo'), null);
     // Localized
     $article->setCoverageChron($this->getData('coverageChron'), null);
     // Localized
     $article->setCoverageSample($this->getData('coverageSample'), null);
     // Localized
     $article->setType($this->getData('type'), null);
     // Localized
     $article->setSponsor($this->getData('sponsor'), null);
     // Localized
     $article->setCitations($this->getData('citations'));
     $article->setPages($this->getData('pages'));
     // Set some default values so the ArticleDAO doesn't complain when adding this article
     $article->setDateSubmitted(Core::getCurrentDate());
     $article->setStatus(STATUS_PUBLISHED);
     $article->setSubmissionProgress(0);
     $article->stampStatusModified();
     $article->setCurrentRound(1);
     $article->setFastTracked(1);
     $article->setHideAuthor(0);
     $article->setCommentsStatus(0);
     // Insert the article to get it's ID
     $articleDao->insertArticle($article);
     $articleId = $article->getId();
     // Add authors
     $authors = $this->getData('authors');
     for ($i = 0, $count = count($authors); $i < $count; $i++) {
         if ($authors[$i]['authorId'] > 0) {
             // Update an existing author
             $author =& $article->getAuthor($authors[$i]['authorId']);
             $isExistingAuthor = true;
         } else {
             // Create a new author
             $author = new Author();
             $isExistingAuthor = false;
         }
         if ($author != null) {
             $author->setSubmissionId($articleId);
             $author->setFirstName($authors[$i]['firstName']);
             $author->setMiddleName($authors[$i]['middleName']);
             $author->setLastName($authors[$i]['lastName']);
             if (array_key_exists('affiliation', $authors[$i])) {
                 $author->setAffiliation($authors[$i]['affiliation'], null);
             }
             $author->setCountry($authors[$i]['country']);
             $author->setEmail($authors[$i]['email']);
             $author->setUrl($authors[$i]['url']);
             if (array_key_exists('competingInterests', $authors[$i])) {
                 $author->setCompetingInterests($authors[$i]['competingInterests'], null);
             }
             $author->setBiography($authors[$i]['biography'], null);
             $author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0);
             $author->setSequence($authors[$i]['seq']);
             if ($isExistingAuthor == false) {
                 $article->addAuthor($author);
             }
         }
     }
     // Add the submission files as galleys
     import('classes.file.TemporaryFileManager');
     import('classes.file.ArticleFileManager');
     $tempFileIds = $this->getData('tempFileId');
     $temporaryFileManager = new TemporaryFileManager();
     $articleFileManager = new ArticleFileManager($articleId);
     foreach (array_keys($tempFileIds) as $locale) {
         $temporaryFile = $temporaryFileManager->getFile($tempFileIds[$locale], $user->getId());
         $fileId = null;
         if ($temporaryFile) {
             $fileId = $articleFileManager->temporaryFileToArticleFile($temporaryFile, ARTICLE_FILE_SUBMISSION);
             $fileType = $temporaryFile->getFileType();
             if (strstr($fileType, 'html')) {
                 import('classes.article.ArticleHTMLGalley');
                 $galley = new ArticleHTMLGalley();
             } else {
                 import('classes.article.ArticleGalley');
                 $galley = new ArticleGalley();
             }
             $galley->setArticleId($articleId);
             $galley->setFileId($fileId);
             $galley->setLocale($locale);
             if ($galley->isHTMLGalley()) {
                 $galley->setLabel('HTML');
             } else {
                 if (strstr($fileType, 'pdf')) {
                     $galley->setLabel('PDF');
                 } else {
                     if (strstr($fileType, 'postscript')) {
                         $galley->setLabel('Postscript');
                     } else {
                         if (strstr($fileType, 'xml')) {
                             $galley->setLabel('XML');
                         } else {
                             $galley->setLabel(__('common.untitled'));
                         }
                     }
                 }
             }
             $galleyDao =& DAORegistry::getDAO('ArticleGalleyDAO');
             $galleyDao->insertGalley($galley);
         }
         if ($locale == $journal->getPrimaryLocale()) {
             $article->setSubmissionFileId($fileId);
             $article->SetReviewFileId($fileId);
         }
         // Update file search index
         import('classes.search.ArticleSearchIndex');
         if (isset($galley)) {
             ArticleSearchIndex::updateFileIndex($galley->getArticleId(), ARTICLE_SEARCH_GALLEY_FILE, $galley->getFileId());
         }
     }
     // Designate this as the review version by default.
     $authorSubmissionDao =& DAORegistry::getDAO('AuthorSubmissionDAO');
     $authorSubmission =& $authorSubmissionDao->getAuthorSubmission($articleId);
     import('classes.submission.author.AuthorAction');
     AuthorAction::designateReviewVersion($authorSubmission, true);
     // Accept the submission
     $sectionEditorSubmission =& $sectionEditorSubmissionDao->getSectionEditorSubmission($articleId);
     $articleFileManager = new ArticleFileManager($articleId);
     $sectionEditorSubmission->setReviewFile($articleFileManager->getFile($article->getSubmissionFileId()));
     import('classes.submission.sectionEditor.SectionEditorAction');
     SectionEditorAction::recordDecision($sectionEditorSubmission, SUBMISSION_EDITOR_DECISION_ACCEPT);
     // Create signoff infrastructure
     $copyeditInitialSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_INITIAL', ASSOC_TYPE_ARTICLE, $articleId);
     $copyeditAuthorSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_AUTHOR', ASSOC_TYPE_ARTICLE, $articleId);
     $copyeditFinalSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_FINAL', ASSOC_TYPE_ARTICLE, $articleId);
     $copyeditInitialSignoff->setUserId(0);
     $copyeditAuthorSignoff->setUserId($user->getId());
     $copyeditFinalSignoff->setUserId(0);
     $signoffDao->updateObject($copyeditInitialSignoff);
     $signoffDao->updateObject($copyeditAuthorSignoff);
     $signoffDao->updateObject($copyeditFinalSignoff);
     $layoutSignoff = $signoffDao->build('SIGNOFF_LAYOUT', ASSOC_TYPE_ARTICLE, $articleId);
     $layoutSignoff->setUserId(0);
     $signoffDao->updateObject($layoutSignoff);
     $proofAuthorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_AUTHOR', ASSOC_TYPE_ARTICLE, $articleId);
     $proofProofreaderSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_PROOFREADER', ASSOC_TYPE_ARTICLE, $articleId);
     $proofLayoutEditorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_LAYOUT', ASSOC_TYPE_ARTICLE, $articleId);
     $proofAuthorSignoff->setUserId($user->getId());
     $proofProofreaderSignoff->setUserId(0);
     $proofLayoutEditorSignoff->setUserId(0);
     $signoffDao->updateObject($proofAuthorSignoff);
     $signoffDao->updateObject($proofProofreaderSignoff);
     $signoffDao->updateObject($proofLayoutEditorSignoff);
     import('classes.author.form.submit.AuthorSubmitForm');
     AuthorSubmitForm::assignEditors($article);
     $articleDao->updateArticle($article);
     // Add to end of editing queue
     import('classes.submission.editor.EditorAction');
     if (isset($galley)) {
         EditorAction::expediteSubmission($article);
     }
     if ($this->getData('destination') == "issue") {
         // Add to an existing issue
         $issueId = $this->getData('issueId');
         $this->scheduleForPublication($articleId, $issueId);
     }
     // Index article.
     import('classes.search.ArticleSearchIndex');
     ArticleSearchIndex::indexArticleMetadata($article);
     // Import the references list.
     $citationDao =& DAORegistry::getDAO('CitationDAO');
     $rawCitationList = $article->getCitations();
     $citationDao->importCitations($request, ASSOC_TYPE_ARTICLE, $articleId, $rawCitationList);
 }
示例#17
0
 /**
  * Import papers (including metadata and files).
  */
 function importPapers()
 {
     if ($this->hasOption('verbose')) {
         printf("Importing papers\n");
     }
     import('classes.file.PaperFileManager');
     import('classes.search.PaperSearchIndex');
     $userDao =& DAORegistry::getDAO('UserDAO');
     $roleDao =& DAORegistry::getDAO('RoleDAO');
     $trackDao =& DAORegistry::getDAO('TrackDAO');
     $paperDao =& DAORegistry::getDAO('PaperDAO');
     $publishedPaperDao =& DAORegistry::getDAO('PublishedPaperDAO');
     $galleyDao =& DAORegistry::getDAO('PaperGalleyDAO');
     $unassignedTrackId = null;
     $result =& $this->importDao->retrieve('SELECT * FROM papers ORDER by id');
     while (!$result->EOF) {
         $row =& $result->fields;
         $schedConf =& $this->schedConfMap[$row['cf']];
         $schedConfId = $schedConf->getId();
         // Bring in the primary user for this paper.
         $user = $userDao->getUserByUsername(Core::cleanVar($row['login']));
         if (!$user) {
             unset($user);
             $user = new User();
             $user->setUsername(Core::cleanVar($row['login']));
             $user->setFirstName(Core::cleanVar($row['first_name']));
             $user->setLastName(Core::cleanVar($row['surname']));
             $user->setAffiliation(Core::cleanVar($row['affiliation']), Locale::getLocale());
             $user->setEmail(Core::cleanVar($row['email']));
             $user->setUrl(Core::cleanVar($row['url']));
             $user->setBiography(Core::cleanVar($row['bio']), Locale::getLocale());
             $user->setLocales(array());
             $user->setDateRegistered($row['created']);
             $user->setDateLastLogin($row['created']);
             $user->setMustChangePassword(1);
             $password = Validation::generatePassword();
             $user->setPassword(Validation::encryptCredentials($user->getUsername(), $password));
             if ($this->hasOption('emailUsers')) {
                 import('classes.mail.MailTemplate');
                 $mail = new MailTemplate('USER_REGISTER');
                 $mail->setFrom($schedConf->getSetting('contactEmail'), $schedConf->getSetting('contactName'));
                 $mail->assignParams(array('username' => $user->getUsername(), 'password' => $password, 'conferenceName' => $schedConf->getFullTitle()));
                 $mail->addRecipient($user->getEmail(), $user->getFullName());
                 $mail->send();
             }
             $user->setDisabled(0);
             $otherUser =& $userDao->getUserByEmail(Core::cleanVar($row['email']));
             if ($otherUser !== null) {
                 // User exists with this email -- munge it to make unique
                 $user->setEmail('ocs-' . Core::cleanVar($row['login']) . '+' . Core::cleanVar($row['email']));
                 $this->conflicts[] = array(&$otherUser, &$user);
             }
             unset($otherUser);
             $userDao->insertUser($user);
             // Make this user a author
             $role = new Role();
             $role->setSchedConfId($schedConf->getId());
             $role->setConferenceId($schedConf->getConferenceId());
             $role->setUserId($user->getId());
             $role->setRoleId(ROLE_ID_AUTHOR);
             $roleDao->insertRole($role);
             unset($role);
         }
         $userId = $user->getId();
         // Bring in the basic entry for the paper
         $paper = new Paper();
         $paper->setUserId($userId);
         $paper->setLocale(Locale::getPrimaryLocale());
         $paper->setSchedConfId($schedConfId);
         $oldTrackId = $row['primary_track_id'];
         if (!$oldTrackId || !isset($this->trackMap[$oldTrackId])) {
             $oldTrackId = $row['secondary_track_id'];
         }
         if (!$oldTrackId || !isset($this->trackMap[$oldTrackId])) {
             if (!$unassignedTrackId) {
                 // Create an "Unassigned" track to use for submissions
                 // that didn't have a track in OCS 1.x.
                 $track = new Track();
                 $track->setSchedConfId($schedConf->getId());
                 $track->setTitle('UNASSIGNED', Locale::getLocale());
                 $track->setSequence(REALLY_BIG_NUMBER);
                 $track->setDirectorRestricted(1);
                 $track->setMetaReviewed(1);
                 $unassignedTrackId = $trackDao->insertTrack($track);
             }
             $newTrackId = $unassignedTrackId;
         } else {
             $newTrackId = $this->trackMap[$oldTrackId];
         }
         $paper->setTrackId($newTrackId);
         $paper->setTitle(Core::cleanVar($row['title']), Locale::getLocale());
         $paper->setAbstract(Core::cleanVar($row['abstract']), Locale::getLocale());
         $paper->setDiscipline(Core::cleanVar($row['discipline']), Locale::getLocale());
         $paper->setSponsor(Core::cleanVar($row['sponsor']), Locale::getLocale());
         $paper->setSubject(Core::cleanVar($row['topic']), Locale::getLocale());
         $paper->setLanguage(Core::cleanVar($row['language']));
         $paper->setDateSubmitted($row['created']);
         $paper->setDateStatusModified($row['timestamp']);
         // $paper->setTypeConst($row['present_format'] == 'multiple' ? SUBMISSION_TYPE_PANEL : SUBMISSION_TYPE_SINGLE); FIXME
         $paper->setCurrentRound(REVIEW_ROUND_ABSTRACT);
         $paper->setSubmissionProgress(0);
         $paper->setPages('');
         // Bring in authors
         $firstNames = split("\n", Core::cleanVar($row['first_name'] . "\n" . $row['add_first_names']));
         $lastNames = split("\n", Core::cleanVar($row['surname'] . "\n" . $row['add_surnames']));
         $emails = split("\n", Core::cleanVar($row['email'] . "\n" . $row['add_emails']));
         $affiliations = split("\n", Core::cleanVar($row['affiliation'] . "\n" . $row['add_affiliations']));
         $urls = split("\n", Core::cleanVar($row['url'] . "\n" . $row['add_urls']));
         foreach ($emails as $key => $email) {
             if (empty($email)) {
                 continue;
             }
             $author = new Author();
             $author->setEmail($email);
             $author->setFirstName($firstNames[$key]);
             $author->setLastName($lastNames[$key]);
             $author->setAffiliation($affiliations[$key], Locale::getLocale());
             @$author->setUrl($urls[$key]);
             // Suppress warnings from inconsistent OCS 1.x data
             $author->setPrimaryContact($key == 0 ? 1 : 0);
             $paper->addAuthor($author);
             unset($author);
         }
         switch ($row['accepted']) {
             case 'true':
                 $paper->setStatus(STATUS_PUBLISHED);
                 $paperId = $paperDao->insertPaper($paper);
                 $publishedPaper = new PublishedPaper();
                 $publishedPaper->setPaperId($paperId);
                 $publishedPaper->setSchedConfId($schedConfId);
                 $publishedPaper->setDatePublished(Core::getCurrentDate());
                 $publishedPaper->setSeq(REALLY_BIG_NUMBER);
                 $publishedPaper->setViews(0);
                 $publishedPaperDao->insertPublishedPaper($publishedPaper);
                 $publishedPaperDao->resequencePublishedPapers($paper->getTrackId(), $schedConfId);
                 break;
             case 'reject':
                 $paper->setStatus(STATUS_DECLINED);
                 $paperId = $paperDao->insertPaper($paper);
                 break;
             default:
                 $paper->setStatus(STATUS_QUEUED);
                 $paperId = $paperDao->insertPaper($paper);
         }
         $this->paperMap[$row['id']] =& $paper;
         $paperFileManager = new PaperFileManager($paperId);
         if (!empty($row['paper']) && $row['paper'] != 'PDF') {
             $format = 'text/html';
             $extension = $paperFileManager->getDocumentExtension($format);
             $fileId = $paperFileManager->writeSubmissionFile('migratedFile' . $extension, $row['paper'], $format);
             $paper->setSubmissionFileId($fileId);
             $paperDao->updatePaper($paper);
             $fileId = $paperFileManager->writePublicFile('migratedGalley' . $extension, $row['paper'], $format);
             PaperSearchIndex::updateFileIndex($paperId, PAPER_SEARCH_GALLEY_FILE, $fileId);
             if (strstr($format, 'html')) {
                 $galley = new PaperHTMLGalley();
                 $galley->setLabel('HTML');
             } else {
                 $galley = new PaperGalley();
                 switch ($format) {
                     case 'application/pdf':
                         $galley->setLabel('PDF');
                         break;
                     case 'application/postscript':
                         $galley->setLabel('PostScript');
                         break;
                     case 'application/msword':
                         $galley->setLabel('Word');
                         break;
                     case 'text/xml':
                         $galley->setLabel('XML');
                         break;
                     case 'application/powerpoint':
                         $galley->setLabel('Slideshow');
                         break;
                     default:
                         $galley->setLabel('Untitled');
                         break;
                 }
             }
             $galley->setLocale(Locale::getLocale());
             $galley->setPaperId($paperId);
             $galley->setFileId($fileId);
             $galleyDao->insertGalley($galley);
             unset($galley);
         } elseif ($row['paper'] == 'PDF') {
             $fileId = $paperFileManager->copySubmissionFile($this->importPath . '/papers/' . $row['pdf'], 'application/pdf');
             $paper->setSubmissionFileId($fileId);
             $paperDao->updatePaper($paper);
             $fileId = $paperFileManager->copyPublicFile($this->importPath . '/papers/' . $row['pdf'], 'application/pdf');
             PaperSearchIndex::updateFileIndex($paperId, PAPER_SEARCH_GALLEY_FILE, $fileId);
             $galley = new PaperGalley();
             $galley->setLabel('PDF');
             $galley->setLocale(Locale::getLocale());
             $galley->setPaperId($paperId);
             $galley->setFileId($fileId);
             $galleyDao->insertGalley($galley);
             unset($galley);
         }
         // FIXME: The following fields from OCS 1.x are UNUSED:
         // program_insert approach coverage format relation appendix_names appendix_dates
         // appendix appendix_pdf secondary_track_id multiple_* restrict_access paper_email
         // delete_paper comment_email
         unset($user);
         unset($paper);
         unset($schedConf);
         unset($paperFileManager);
         $result->MoveNext();
     }
     $result->Close();
 }
示例#18
0
 /**
  * Save changes to paper.
  * @return int the paper ID
  */
 function execute()
 {
     $paperDao = DAORegistry::getDAO('PaperDAO');
     if (isset($this->paper)) {
         $reviewMode = $this->paper->getReviewMode();
         // Update existing paper
         $this->paper->setTrackId($this->getData('trackId'));
         $this->paper->setLocale($this->getData('locale'));
         $this->paper->setCommentsToDirector($this->getData('commentsToDirector'));
         $this->paper->setData('sessionType', $this->getData('sessionType'));
         if ($this->paper->getSubmissionProgress() <= $this->step) {
             $this->paper->stampStatusModified();
             if ($reviewMode == REVIEW_MODE_ABSTRACTS_ALONE) {
                 $this->paper->setSubmissionProgress($this->step + 2);
             } else {
                 $this->paper->setSubmissionProgress($this->step + 1);
             }
         }
         $paperDao->updatePaper($this->paper);
     } else {
         // Insert new paper
         $conference =& Request::getConference();
         $schedConf =& Request::getSchedConf();
         $user =& Request::getUser();
         $this->paper = new Paper();
         $this->paper->setLocale($this->getData('locale'));
         $this->paper->setUserId($user->getId());
         $this->paper->setSchedConfId($schedConf->getId());
         $this->paper->setTrackId($this->getData('trackId'));
         $this->paper->stampStatusModified();
         $reviewMode = $schedConf->getSetting('reviewMode');
         $this->paper->setReviewMode($reviewMode);
         $this->paper->setLanguage(String::substr($this->paper->getLocale(), 0, 2));
         $this->paper->setCommentsToDirector($this->getData('commentsToDirector'));
         switch ($reviewMode) {
             case REVIEW_MODE_ABSTRACTS_ALONE:
             case REVIEW_MODE_BOTH_SEQUENTIAL:
                 $this->paper->setSubmissionProgress($this->step + 2);
                 $this->paper->setCurrentRound(REVIEW_ROUND_ABSTRACT);
                 break;
             case REVIEW_MODE_PRESENTATIONS_ALONE:
             case REVIEW_MODE_BOTH_SIMULTANEOUS:
                 $this->paper->setSubmissionProgress($this->step + 1);
                 $this->paper->setCurrentRound(REVIEW_ROUND_PRESENTATION);
                 break;
         }
         $this->paper->setData('sessionType', $this->getData('sessionType'));
         $paperDao->insertPaper($this->paper);
         $this->paperId = $this->paper->getPaperId();
         // Set user to initial author
         $authorDao = DAORegistry::getDAO('AuthorDAO');
         /* @var $authorDao AuthorDAO */
         $user =& Request::getUser();
         $author = new Author();
         $author->setSubmissionId($this->paperId);
         $author->setFirstName($user->getFirstName());
         $author->setMiddleName($user->getMiddleName());
         $author->setLastName($user->getLastName());
         $author->setAffiliation($user->getAffiliation(null), null);
         $author->setCountry($user->getCountry());
         $author->setEmail($user->getEmail());
         $author->setUrl($user->getUrl());
         $author->setBiography($user->getBiography(null), null);
         $author->setPrimaryContact(1);
         $authorDao->insertObject($author);
     }
     return $this->paperId;
 }
示例#19
0
     $isNewAuthor = true;
 }
 $uploadFileSpecified = isset($_FILES['file']) && isset($_FILES['file']['name']) && !empty($_FILES['file']['name']);
 $author->setFirstName($first_name);
 $author->setLastName($last_name);
 $author->commit();
 // Reset types
 $types = Input::Get('type', 'array', array());
 AuthorAssignedType::ResetAuthorAssignedTypes($author->getId());
 foreach ($types as $type) {
     $author->setType($type);
 }
 $author->setSkype(Input::Get('skype'));
 $author->setJabber(Input::Get('jabber'));
 $author->setAim(Input::Get('aim'));
 $author->setEmail(Input::Get('email'));
 $authorBiography = array();
 $authorBiography['biography'] = Input::Get("txt_biography", "string");
 $authorBiography['language'] = Input::Get("lang", "int", 0);
 $authorBiography['first_name'] = Input::Get("lang_first_name");
 $authorBiography['last_name'] = Input::Get("lang_last_name");
 $author->setBiography($authorBiography);
 if ($uploadFileSpecified) {
     $attributes = array();
     $image = Image::OnImageUpload($_FILES['file'], $attributes);
     if (PEAR::isError($image)) {
         camp_html_add_msg($image->getMessage());
     } else {
         $author->setImage($image->getImageId());
     }
 }
    function importArticles()
    {
        assert($this->xml->name == 'articles');
        $articleDAO =& DAORegistry::getDAO('ArticleDAO');
        $articles = $articleDAO->getArticlesByJournalId($this->journal->getId());
        $journalFileManager = new JournalFileManager($this->journal);
        $publicFileManager =& new PublicFileManager();
        $this->nextElement();
        while ($this->xml->name == 'article') {
            $articleXML = $this->getCurrentElementAsDom();
            $article = new Article();
            $article->setJournalId($this->journal->getId());
            $article->setUserId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $articleXML->userId));
            $article->setSectionId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_SECTION, (int) $articleXML->sectionId));
            $article->setLocale((string) $articleXML->locale);
            $article->setLanguage((string) $articleXML->language);
            $article->setCommentsToEditor((string) $articleXML->commentsToEditor);
            $article->setCitations((string) $articleXML->citations);
            $article->setDateSubmitted((string) $articleXML->dateSubmitted);
            $article->setDateStatusModified((string) $articleXML->dateStatusModified);
            $article->setLastModified((string) $articleXML->lastModified);
            $article->setStatus((int) $articleXML->status);
            $article->setSubmissionProgress((int) $articleXML->submissionProgress);
            $article->setCurrentRound((int) $articleXML->currentRound);
            $article->setPages((string) $articleXML->pages);
            $article->setFastTracked((int) $articleXML->fastTracked);
            $article->setHideAuthor((int) $articleXML->hideAuthor);
            $article->setCommentsStatus((int) $articleXML->commentsStatus);
            $articleDAO->insertArticle($article);
            $oldArticleId = (int) $articleXML->oldId;
            $this->restoreDataObjectSettings($articleDAO, $articleXML->settings, 'article_settings', 'article_id', $article->getId());
            $article =& $articleDAO->getArticle($article->getId());
            // Reload article with restored settings
            $covers = $article->getFileName(null);
            if ($covers) {
                foreach ($covers as $locale => $oldCoverFileName) {
                    $sourceFile = $this->publicFolderPath . '/' . $oldCoverFileName;
                    $extension = $publicFileManager->getExtension($oldCoverFileName);
                    $destFile = 'cover_issue_' . $article->getId() . "_{$locale}.{$extension}";
                    $publicFileManager->copyJournalFile($this->journal->getId(), $sourceFile, $destFile);
                    unlink($sourceFile);
                    $article->setFileName($destFile, $locale);
                    $articleDAO->updateArticle($article);
                }
            }
            $articleFileManager = new ArticleFileManager($article->getId());
            $authorDAO =& DAORegistry::getDAO('AuthorDAO');
            foreach ($articleXML->author as $authorXML) {
                $author = new Author();
                $author->setArticleId($article->getId());
                $author->setFirstName((string) $authorXML->firstName);
                $author->setMiddleName((string) $authorXML->middleName);
                $author->setLastName((string) $authorXML->lastName);
                $author->setSuffix((string) $authorXML->suffix);
                $author->setCountry((string) $authorXML->country);
                $author->setEmail((string) $authorXML->email);
                $author->setUrl((string) $authorXML->url);
                $author->setUserGroupId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_GROUP, (int) $authorXML->userGroupId));
                $author->setPrimaryContact((int) $authorXML->primaryContact);
                $author->setSequence((int) $authorXML->sequence);
                $authorDAO->insertAuthor($author);
                $this->restoreDataObjectSettings($authorDAO, $authorXML->settings, 'author_settings', 'author_id', $author->getId());
                unset($author);
            }
            $articleEmailLogDAO =& DAORegistry::getDAO('ArticleEmailLogDAO');
            $emailLogsXML = array();
            foreach ($articleXML->emailLogs->emailLog as $emailLogXML) {
                array_unshift($emailLogsXML, $emailLogXML);
            }
            foreach ($emailLogsXML as $emailLogXML) {
                $emailLog = new ArticleEmailLogEntry();
                $emailLog->setAssocType(ASSOC_TYPE_ARTICLE);
                $emailLog->setAssocId($article->getId());
                $emailLog->setSenderId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $emailLogXML->senderId));
                $emailLog->setDateSent((string) $emailLogXML->dateSent);
                $emailLog->setIPAddress((string) $emailLogXML->IPAddress);
                $emailLog->setEventType((int) $emailLogXML->eventType);
                $emailLog->setFrom((string) $emailLogXML->from);
                $emailLog->setRecipients((string) $emailLogXML->recipients);
                $emailLog->setCcs((string) $emailLogXML->ccs);
                $emailLog->setBccs((string) $emailLogXML->bccs);
                $emailLog->setSubject((string) $emailLogXML->subject);
                $emailLog->setBody((string) $emailLogXML->body);
                $articleEmailLogDAO->insertObject($emailLog);
                $this->idTranslationTable->register(INTERNAL_TRANSFER_OBJECT_ARTICLE_EMAIL_LOG, (int) $emailLogXML->oldId, $emailLog->getId());
            }
            $articleFileDAO =& DAORegistry::getDAO('ArticleFileDAO');
            foreach ($articleXML->articleFile as $articleFileXML) {
                try {
                    $articleFile = new ArticleFile();
                    $articleFile->setArticleId($article->getId());
                    $articleFile->setSourceFileId((int) $articleFileXML->sourceFileId);
                    $articleFile->setSourceRevision((int) $articleFileXML->sourceRevision);
                    $articleFile->setRevision((int) $articleFileXML->revision);
                    $articleFile->setFileName((string) $articleFileXML->fileName);
                    $articleFile->setFileType((string) $articleFileXML->fileType);
                    $articleFile->setFileSize((string) $articleFileXML->fileSize);
                    $articleFile->setOriginalFileName((string) $articleFileXML->originalFileName);
                    $articleFile->setFileStage((int) $articleFileXML->fileStage);
                    $articleFile->setAssocId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_EMAIL_LOG, (int) $articleFileXML->assocId));
                    $articleFile->setDateUploaded((string) $articleFileXML->dateUploaded);
                    $articleFile->setDateModified((string) $articleFileXML->dateModified);
                    $articleFile->setRound((int) $articleFileXML->round);
                    $articleFile->setViewable((int) $articleFileXML->viewable);
                    $articleFileDAO->insertArticleFile($articleFile);
                    $oldArticleFileId = (int) $articleFileXML->oldId;
                    $oldFileName = $articleFile->getFileName();
                    $stagePath = $articleFileManager->fileStageToPath($articleFile->getFileStage());
                    $fileInTransferPackage = $this->journalFolderPath . "/articles/{$oldArticleId}/{$stagePath}/{$oldFileName}";
                    $newFileName = $articleFileManager->generateFilename($articleFile, $articleFile->getFileStage(), $articleFile->getOriginalFileName());
                    $newFilePath = "/articles/" . $article->getId() . "/{$stagePath}/{$newFileName}";
                    $journalFileManager->copyFile($fileInTransferPackage, $journalFileManager->filesDir . $newFilePath);
                    unlink($fileInTransferPackage);
                    $articleFileDAO->updateArticleFile($articleFile);
                    $this->idTranslationTable->register(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, $oldArticleFileId, $articleFile->getFileId());
                } catch (Exception $e) {
                }
            }
            $articleFiles = $articleFileDAO->getArticleFilesByArticle($article->getId());
            foreach ($articleFiles as $articleFile) {
                try {
                    $articleFile->setSourceFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, $articleFile->getSourceFileId()));
                    $articleFileDAO->updateArticleFile($articleFile);
                } catch (Exception $e) {
                }
            }
            $suppFileDAO =& DAORegistry::getDAO('SuppFileDAO');
            foreach ($articleXML->suppFile as $suppFileXML) {
                $suppFile =& new SuppFile();
                $suppFile->setArticleId($article->getId());
                $suppFile->setRemoteURL((string) $suppFileXML->remoteURL);
                $suppFile->setFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $suppFileXML->fileId));
                $suppFile->setType((string) $suppFileXML->type);
                $suppFile->setDateCreated((string) $suppFileXML->dateCreated);
                $suppFile->setLanguage((string) $suppFileXML->language);
                $suppFile->setShowReviewers((int) $suppFileXML->showReviewers);
                $suppFile->setDateSubmitted((string) $suppFileXML->dateSubmitted);
                $suppFile->setSequence((int) $suppFileXML->sequence);
                $suppFileDAO->insertSuppFile($suppFile);
                $this->restoreDataObjectSettings($suppFileDAO, $suppFileXML->settings, 'article_supp_file_settings', 'supp_id', $suppFile->getId());
            }
            $articleCommentDAO =& DAORegistry::getDAO('ArticleCommentDAO');
            foreach ($articleXML->articleComment as $articleCommentXML) {
                $articleComment = new ArticleComment();
                $articleComment->setArticleId($article->getId());
                $articleComment->setAssocId($article->getId());
                $articleComment->setCommentType((int) $articleCommentXML->commentType);
                $articleComment->setRoleId((int) $articleCommentXML->roleId);
                $articleComment->setAuthorId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $articleCommentXML->authorId));
                $articleComment->setCommentTitle((string) $articleCommentXML->commentTitle);
                $articleComment->setComments((string) $articleCommentXML->comments);
                $articleComment->setDatePosted((string) $articleCommentXML->datePosted);
                $articleComment->setDateModified((string) $articleCommentXML->dateModified);
                $articleComment->setViewable((int) $articleCommentXML->viewable);
                $articleCommentDAO->insertArticleComment($articleComment);
            }
            $articleGalleyDAO =& DAORegistry::getDAO('ArticleGalleyDAO');
            foreach ($articleXML->articleGalley as $articleGalleyXML) {
                $articleGalley = null;
                if ($articleGalleyXML->htmlGalley == "1") {
                    $articleGalley = new ArticleHTMLGalley();
                } else {
                    $articleGalley = new ArticleGalley();
                }
                $articleGalley->setArticleId($article->getId());
                $articleGalley->setLocale((string) $articleGalleyXML->locale);
                $articleGalley->setFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleGalleyXML->fileId));
                $articleGalley->setLabel((string) $articleGalleyXML->label);
                $articleGalley->setSequence((int) $articleGalleyXML->sequence);
                $articleGalley->setRemoteURL((string) $articleGalleyXML->remoteURL);
                if ($articleGalley instanceof ArticleHTMLGalley) {
                    $articleGalley->setStyleFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleGalleyXML->styleFileId));
                }
                $articleGalleyDAO->insertGalley($articleGalley);
                if ($articleGalley instanceof ArticleHTMLGalley) {
                    foreach ($articleGalleyXML->htmlGalleyImage as $articleGalleyImageXML) {
                        $imageId = $this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleGalleyImageXML);
                        $articleGalleyDAO->insertGalleyImage($articleGalley->getId(), $imageId);
                    }
                }
                $this->restoreDataObjectSettings($articleGalleyDAO, $articleGalleyXML->settings, 'article_galley_settings', 'galley_id', $articleGalley->getId());
            }
            $noteDAO =& DAORegistry::getDAO('NoteDAO');
            foreach ($articleXML->articleNote as $articleNoteXML) {
                $articleNote = new Note();
                $articleNote->setUserId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $articleNoteXML->userId));
                $articleNote->setFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleNoteXML->fileId));
                $articleNote->setAssocType(ASSOC_TYPE_ARTICLE);
                $articleNote->setAssocId($article->getId());
                $articleNote->setDateCreated((string) $articleNoteXML->dateCreated);
                $articleNote->setDateModified((string) $articleNoteXML->dateModified);
                $articleNote->setContents((string) $articleNoteXML->contents);
                $articleNote->setTitle((string) $articleNoteXML->title);
                $noteDAO->insertObject($articleNote);
            }
            $editAssignmentDAO =& DAORegistry::getDAO('EditAssignmentDAO');
            foreach ($articleXML->editAssignment as $editAssignmentXML) {
                $editAssignment = new EditAssignment();
                $editAssignment->setArticleId($article->getId());
                $editAssignment->setEditorId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $editAssignmentXML->editorId));
                $editAssignment->setCanReview((int) $editAssignmentXML->canReview);
                $editAssignment->setCanEdit((int) $editAssignmentXML->canEdit);
                $editAssignment->setDateUnderway((string) $editAssignmentXML->dateUnderway);
                $editAssignment->setDateNotified((string) $editAssignmentXML->dateNotified);
                $editAssignmentDAO->insertEditAssignment($editAssignment);
            }
            $reviewAssignmentDAO =& DAORegistry::getDAO('ReviewAssignmentDAO');
            $reviewFormResponseDAO =& DAORegistry::getDAO('ReviewFormResponseDAO');
            foreach ($articleXML->reviewAssignment as $reviewAssignmentXML) {
                $reviewAssignment = new ReviewAssignment();
                $reviewAssignment->setSubmissionId($article->getId());
                $reviewAssignment->setReviewerId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $reviewAssignmentXML->reviewerId));
                try {
                    $reviewAssignment->setReviewerFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $reviewAssignmentXML->reviewerFileId));
                } catch (Exception $e) {
                    $this->logger->log("Arquivo do artigo {$oldArticleId} não encontrado. ID: " . (int) $reviewAssignmentXML->reviewerFileId . "\n");
                }
                $reviewAssignment->setReviewFormId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_REVIEW_FORM, (int) $reviewAssignmentXML->reviewFormId));
                $reviewAssignment->setReviewRoundId((int) $reviewAssignmentXML->reviewRoundId);
                $reviewAssignment->setStageId((int) $reviewAssignmentXML->stageId);
                $reviewAssignment->setReviewerFullName((string) $reviewAssignmentXML->reviewerFullName);
                $reviewAssignment->setCompetingInterests((string) $reviewAssignmentXML->competingInterests);
                $reviewAssignment->setRegretMessage((string) $reviewAssignmentXML->regretMessage);
                $reviewAssignment->setRecommendation((string) $reviewAssignmentXML->recommendation);
                $reviewAssignment->setDateAssigned((string) $reviewAssignmentXML->dateAssigned);
                $reviewAssignment->setDateNotified((string) $reviewAssignmentXML->dateNotified);
                $reviewAssignment->setDateConfirmed((string) $reviewAssignmentXML->dateConfirmed);
                $reviewAssignment->setDateCompleted((string) $reviewAssignmentXML->dateCompleted);
                $reviewAssignment->setDateAcknowledged((string) $reviewAssignmentXML->dateAcknowledged);
                $reviewAssignment->setDateDue((string) $reviewAssignmentXML->dateDue);
                $reviewAssignment->setDateResponseDue((string) $reviewAssignmentXML->dateResponseDue);
                $reviewAssignment->setLastModified((string) $reviewAssignmentXML->lastModified);
                $reviewAssignment->setDeclined((int) $reviewAssignmentXML->declined);
                $reviewAssignment->setReplaced((int) $reviewAssignmentXML->replaced);
                $reviewAssignment->setCancelled((int) $reviewAssignmentXML->cancelled);
                $reviewAssignment->setQuality((int) $reviewAssignmentXML->quality);
                $reviewAssignment->setDateRated((string) $reviewAssignmentXML->dateRated);
                $reviewAssignment->setDateReminded((string) $reviewAssignmentXML->dateReminded);
                $reviewAssignment->setReminderWasAutomatic((int) $reviewAssignmentXML->reminderWasAutomatic);
                $reviewAssignment->setRound((int) $reviewAssignmentXML->round);
                $reviewAssignment->setReviewRevision((int) $reviewAssignmentXML->reviewRevision);
                $reviewAssignment->setReviewMethod((int) $reviewAssignmentXML->reviewMethod);
                $reviewAssignment->setUnconsidered((int) $reviewAssignmentXML->unconsidered);
                $reviewAssignmentDAO->insertObject($reviewAssignment);
                foreach ($reviewAssignmentXML->formResponses->formResponse as $formResponseXML) {
                    $reviewFormResponseDAO->update('INSERT INTO review_form_responses
							(review_form_element_id, review_id, response_type, response_value)
							VALUES
							(?, ?, ?, ?)', array($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_REVIEW_FORM_ELEMENT, (int) $formResponseXML->reviewFormElementId), $reviewAssignment->getId(), (string) $formResponseXML->responseType, (string) $formResponseXML->responseValue));
                }
            }
            $signoffDAO =& DAORegistry::getDAO('SignoffDAO');
            foreach ($articleXML->signoff as $signoffXML) {
                $signoff = new Signoff();
                $signoff->setAssocType(ASSOC_TYPE_ARTICLE);
                $signoff->setAssocId($article->getId());
                $signoff->setUserId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $signoffXML->userId));
                $signoff->setFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $signoffXML->fileId));
                $signoff->setUserGroupId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_GROUP, (int) $signoffXML->userGroupId));
                $signoff->setSymbolic((string) $signoffXML->symbolic);
                $signoff->setFileRevision((int) $signoffXML->fileRevision);
                $signoff->setDateUnderway((string) $signoffXML->dateUnderway);
                $signoff->setDateNotified((string) $signoffXML->dateNotified);
                $signoff->setDateCompleted((string) $signoffXML->dateCompleted);
                $signoff->setDateAcknowledged((string) $signoffXML->dateAcknowledged);
                $signoffDAO->insertObject($signoff);
            }
            $editorSubmissionDAO =& DAORegistry::getDAO('EditorSubmissionDAO');
            foreach ($articleXML->editDecisions as $editDecisionXML) {
                $editDecisions =& $editorSubmissionDAO->update('INSERT INTO edit_decisions (article_id, round, editor_id, decision, date_decided) values (?, ?, ?, ?, ?)', array($article->getId(), (string) $editDecisionXML->round, $this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $editDecisionXML->editorId), (string) $editDecisionXML->decision, (string) $editDecisionXML->dateDecided));
            }
            $publishedArticleDAO =& DAORegistry::getDAO('PublishedArticleDAO');
            if (isset($articleXML->publishedArticle)) {
                $publishedArticleXML = $articleXML->publishedArticle;
                $publishedArticle = new PublishedArticle();
                $publishedArticle->setId($article->getId());
                $publishedArticle->setIssueId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ISSUE, (int) $publishedArticleXML->issueId));
                $publishedArticle->setDatePublished((string) $publishedArticleXML->datePublished);
                $publishedArticle->setSeq((int) $publishedArticleXML->seq);
                $publishedArticle->setAccessStatus((int) $publishedArticleXML->accessStatus);
                $publishedArticleDAO->insertPublishedArticle($publishedArticle);
            }
            $articleEventLogDAO =& DAORegistry::getDAO('ArticleEventLogDAO');
            $eventLogsXML =& iterator_to_array($articleXML->eventLogs->eventLog);
            $eventLogsXML = array();
            foreach ($articleXML->eventLogs->eventLog as $eventLogXML) {
                array_unshift($eventLogsXML, $eventLogXML);
            }
            foreach ($eventLogsXML as $eventLogXML) {
                $eventLog = new ArticleEventLogEntry();
                $eventLog->setAssocType(ASSOC_TYPE_ARTICLE);
                $eventLog->setAssocId($article->getId());
                $eventLog->setUserId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $eventLogXML->userId));
                $eventLog->setDateLogged((string) $eventLogXML->dateLogged);
                $eventLog->setIPAddress((string) $eventLogXML->IPAddress);
                $eventLog->setEventType((int) $eventLogXML->eventType);
                $eventLog->setMessage((string) $eventLogXML->message);
                $eventLog->setIsTranslated((int) $eventLogXML->isTranslated);
                $articleEventLogDAO->insertObject($eventLog);
                $this->restoreDataObjectSettings($articleEventLogDAO, $eventLogXML->settings, 'event_log_settings', 'log_id', $eventLog->getId());
            }
            try {
                $article->setSubmissionFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleXML->submissionFileId));
            } catch (Exception $e) {
            }
            try {
                $article->setRevisedFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleXML->revisedFileId));
            } catch (Exception $e) {
            }
            try {
                $article->setReviewFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleXML->reviewFileId));
            } catch (Exception $e) {
            }
            try {
                $article->setEditorFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleXML->editorFileId));
            } catch (Exception $e) {
            }
            $articleDAO->updateArticle($article);
            $this->nextElement();
        }
    }
示例#21
0
    $rev1->setReviewDate("08/09/2001");
    // will fail: reviewed_by column required
    $bk1->addReview($rev1);
    $ret2 = $bk1->validate();
    $failures2 = $bk1->getValidationFailures();
    print "Making sure 6 validation messages were returned: ";
    print boolTest(count($failures2) === 3);
    print "Making sure correct columns failed: ";
    print boolTest(array_keys($failures2) === array(AuthorPeer::LAST_NAME, BookPeer::TITLE, ReviewPeer::REVIEWED_BY));
    $bk2 = new Book();
    $bk2->setTitle("12345678901");
    // passes
    $auth2 = new Author();
    $auth2->setLastName("Blah");
    //passes
    $auth2->setEmail("*****@*****.**");
    //passes
    $auth2->setAge(50);
    //passes
    $bk2->setAuthor($auth2);
    $rev2 = new Review();
    $rev2->setReviewedBy("Me!");
    // passes
    $rev2->setStatus("new");
    // passes
    $bk2->addReview($rev2);
    $ret3 = $bk2->validate();
    print "Making sure complex validation can pass: "******"Error doing validation tests: " . $e->__toString());
示例#22
0
 /**
  * Save changes to paper.
  * @return int the paper ID
  */
 function execute()
 {
     $paperDao =& DAORegistry::getDAO('PaperDAO');
     $authorDao =& DAORegistry::getDAO('AuthorDAO');
     $paper =& $this->paper;
     $conference =& Request::getConference();
     $schedConf =& Request::getSchedConf();
     $user =& Request::getUser();
     // Update paper
     $paper->setTitle($this->getData('title'), null);
     // Localized
     $reviewMode = $this->paper->getReviewMode();
     if ($reviewMode != REVIEW_MODE_PRESENTATIONS_ALONE) {
         $paper->setAbstract($this->getData('abstract'), null);
         // Localized
     }
     $paper->setDiscipline($this->getData('discipline'), null);
     // Localized
     $paper->setSubjectClass($this->getData('subjectClass'), null);
     // Localized
     $paper->setSubject($this->getData('subject'), null);
     // Localized
     $paper->setCoverageGeo($this->getData('coverageGeo'), null);
     // Localized
     $paper->setCoverageChron($this->getData('coverageChron'), null);
     // Localized
     $paper->setCoverageSample($this->getData('coverageSample'), null);
     // Localized
     $paper->setType($this->getData('type'), null);
     // Localized
     $paper->setLanguage($this->getData('language'));
     // Localized
     $paper->setSponsor($this->getData('sponsor'), null);
     // Localized
     $paper->setCitations($this->getData('citations'));
     // Update the submission progress if necessary.
     if ($paper->getSubmissionProgress() <= $this->step) {
         $paper->stampStatusModified();
         // If we aren't about to collect the paper, the submission is complete
         // (for now)
         $reviewMode = $this->paper->getReviewMode();
         if ($reviewMode == REVIEW_MODE_BOTH_SIMULTANEOUS || $reviewMode == REVIEW_MODE_PRESENTATIONS_ALONE) {
             if (!$schedConf->getSetting('acceptSupplementaryReviewMaterials')) {
                 $paper->setSubmissionProgress($this->step + 2);
             } else {
                 $paper->setSubmissionProgress($this->step + 1);
             }
             // The line below is necessary to ensure that
             // the paper upload goes in with the correct
             // stage number (i.e. paper).
             $paper->setCurrentStage(REVIEW_STAGE_PRESENTATION);
         } else {
             $paper->setDateSubmitted(Core::getCurrentDate());
             $paper->stampStatusModified();
             $paper->setCurrentStage(REVIEW_STAGE_ABSTRACT);
             $this->assignDirectors($paper);
             if ($schedConf->getSetting('acceptSupplementaryReviewMaterials')) {
                 $paper->setSubmissionProgress($this->step + 2);
             } else {
                 $paper->setSubmissionProgress(0);
                 $this->confirmSubmission($paper, $user, $schedConf, $conference, 'SUBMISSION_ACK');
             }
         }
     }
     // Update authors
     $authors = $this->getData('authors');
     for ($i = 0, $count = count($authors); $i < $count; $i++) {
         if ($authors[$i]['authorId'] > 0) {
             // Update an existing author
             $author =& $paper->getAuthor($authors[$i]['authorId']);
             $isExistingAuthor = true;
         } else {
             // Create a new author
             $author = new Author();
             $isExistingAuthor = false;
         }
         if ($author != null) {
             $author->setFirstName($authors[$i]['firstName']);
             $author->setMiddleName($authors[$i]['middleName']);
             $author->setLastName($authors[$i]['lastName']);
             $author->setAffiliation($authors[$i]['affiliation']);
             $author->setCountry($authors[$i]['country']);
             $author->setEmail($authors[$i]['email']);
             $author->setUrl($authors[$i]['url']);
             $author->setBiography($authors[$i]['biography'], null);
             // Localized
             $author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0);
             $author->setSequence($authors[$i]['seq']);
             if ($isExistingAuthor == false) {
                 $paper->addAuthor($author);
             }
         }
         unset($author);
     }
     // Remove deleted authors
     $deletedAuthors = explode(':', $this->getData('deletedAuthors'));
     for ($i = 0, $count = count($deletedAuthors); $i < $count; $i++) {
         $paper->removeAuthor($deletedAuthors[$i]);
     }
     // Save the paper
     $paperDao->updatePaper($paper);
     // Log the submission, even though it may not be "complete"
     // at this step. This is important because we don't otherwise
     // capture changes in review process.
     import('paper.log.PaperLog');
     import('paper.log.PaperEventLogEntry');
     PaperLog::logEvent($this->paperId, PAPER_LOG_ABSTRACT_SUBMIT, LOG_TYPE_AUTHOR, $user->getId(), 'log.author.abstractSubmitted', array('submissionId' => $paper->getId(), 'authorName' => $user->getFullName()));
     return $this->paperId;
 }
示例#23
0
 function handleAuthorNode(&$conference, &$schedConf, &$authorNode, &$track, &$paper, &$errors)
 {
     $errors = array();
     $conferenceSupportedLocales = array_keys($conference->getSupportedLocaleNames());
     // => conference locales must be set up before
     $conferencePrimaryLocale = $conference->getPrimaryLocale();
     $author = new Author();
     if ($node = $authorNode->getChildByName('firstname')) {
         $author->setFirstName($node->getValue());
     }
     if ($node = $authorNode->getChildByName('middlename')) {
         $author->setMiddleName($node->getValue());
     }
     if ($node = $authorNode->getChildByName('lastname')) {
         $author->setLastName($node->getValue());
     }
     if ($node = $authorNode->getChildByName('affiliation')) {
         $author->setAffiliation($node->getValue());
     }
     if ($node = $authorNode->getChildByName('country')) {
         $author->setCountry($node->getValue());
     }
     if ($node = $authorNode->getChildByName('email')) {
         $author->setEmail($node->getValue());
     }
     if ($node = $authorNode->getChildByName('url')) {
         $author->setUrl($node->getValue());
     }
     for ($index = 0; $node = $authorNode->getChildByName('biography', $index); $index++) {
         $locale = $node->getAttribute('locale');
         if ($locale == '') {
             $locale = $conferencePrimaryLocale;
         } elseif (!in_array($locale, $conferenceSupportedLocales)) {
             $errors[] = array('plugins.importexport.native.import.error.paperAuthorBiographyLocaleUnsupported', array('authorFullName' => $author->getFullName(), 'paperTitle' => $paper->getLocalizedTitle(), 'locale' => $locale));
             return false;
         }
         $author->setBiography($node->getValue(), $locale);
     }
     $author->setPrimaryContact($authorNode->getAttribute('primary_contact') === 'true' ? 1 : 0);
     $paper->addAuthor($author);
     // instead of $author->setSequence($index+1);
     return true;
 }
示例#24
0
 public function testDoValidate_BasicValidatorObj()
 {
     $author = new Author();
     $author->setFirstName("Malcolm");
     // last name required, valid email format, age > 0
     $author->setLastName("X");
     $author->setEmail('malcolm@');
     // fail
     $res = $author->validate();
     $this->assertFalse($res, "Expected validation to fail.");
     $failures = $author->getValidationFailures();
     $this->assertEquals(1, count($failures), "Expected 1 column to fail validation.");
     $this->assertEquals(array(AuthorPeer::EMAIL), array_keys($failures), "Expected EMAIL to fail validation.");
     $validator = $failures[AuthorPeer::EMAIL]->getValidator();
     $this->assertTrue($validator instanceof MatchValidator, "Expected validator that failed to be MatchValidator");
 }
 function handleAuthorNode(&$journal, &$authorNode, &$issue, &$section, &$article, &$errors)
 {
     $errors = array();
     $journalSupportedLocales = array_keys($journal->getSupportedLocaleNames());
     // => journal locales must be set up before
     $journalPrimaryLocale = $journal->getPrimaryLocale();
     $author = new Author();
     if ($node = $authorNode->getChildByName('firstname')) {
         $author->setFirstName($node->getValue());
     }
     if ($node = $authorNode->getChildByName('middlename')) {
         $author->setMiddleName($node->getValue());
     }
     if ($node = $authorNode->getChildByName('lastname')) {
         $author->setLastName($node->getValue());
     }
     for ($index = 0; $node = $authorNode->getChildByName('affiliation', $index); $index++) {
         $locale = $node->getAttribute('locale');
         if ($locale == '') {
             $locale = $journalPrimaryLocale;
         } elseif (!in_array($locale, $journalSupportedLocales)) {
             $errors[] = array('plugins.importexport.native.import.error.articleAuthorAffiliationLocaleUnsupported', array('authorFullName' => $author->getFullName(), 'articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale));
             return false;
         }
         $author->setAffiliation($node->getValue(), $locale);
     }
     if ($node = $authorNode->getChildByName('country')) {
         $author->setCountry($node->getValue());
     }
     if ($node = $authorNode->getChildByName('email')) {
         $author->setEmail($node->getValue());
     }
     if ($node = $authorNode->getChildByName('url')) {
         $author->setUrl($node->getValue());
     }
     for ($index = 0; $node = $authorNode->getChildByName('competing_interests', $index); $index++) {
         $locale = $node->getAttribute('locale');
         if ($locale == '') {
             $locale = $journalPrimaryLocale;
         } elseif (!in_array($locale, $journalSupportedLocales)) {
             $errors[] = array('plugins.importexport.native.import.error.articleAuthorCompetingInterestsLocaleUnsupported', array('authorFullName' => $author->getFullName(), 'articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale));
             return false;
         }
         $author->setCompetingInterests($node->getValue(), $locale);
     }
     for ($index = 0; $node = $authorNode->getChildByName('biography', $index); $index++) {
         $locale = $node->getAttribute('locale');
         if ($locale == '') {
             $locale = $journalPrimaryLocale;
         } elseif (!in_array($locale, $journalSupportedLocales)) {
             $errors[] = array('plugins.importexport.native.import.error.articleAuthorBiographyLocaleUnsupported', array('authorFullName' => $author->getFullName(), 'articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale));
             return false;
         }
         $author->setBiography($node->getValue(), $locale);
     }
     $author->setPrimaryContact($authorNode->getAttribute('primary_contact') === 'true' ? 1 : 0);
     $article->addAuthor($author);
     // instead of $author->setSequence($index+1);
     return true;
 }
 /**
  * Save changes to article.
  * @param $request Request
  * @return int the article ID
  */
 function execute(&$request)
 {
     $articleDao =& DAORegistry::getDAO('ArticleDAO');
     $article =& $this->article;
     $articleSitesData = $this->getData('articleSites');
     $articleSites = $article->getArticleSites();
     import('classes.journal.TrialSite');
     import('classes.article.ArticleSite');
     // Remove deleted article sites
     foreach ($articleSites as $articleSite) {
         $isPresent = false;
         foreach ($articleSitesData as $articleSiteData) {
             if (!empty($articleSiteData['id'])) {
                 if ($articleSite->getId() == $articleSiteData['id']) {
                     $isPresent = true;
                 }
             }
         }
         if (!$isPresent) {
             $article->removeArticleSite($articleSite->getId());
         }
         unset($isPresent);
         unset($articleSite);
     }
     // Update / Insters article sites
     foreach ($articleSitesData as $articleSiteData) {
         if (isset($articleSiteData['id'])) {
             $articleSite = $article->getArticleSite($articleSiteData['id']);
             $isExistingSite = true;
         } else {
             $articleSite = new ArticleSite();
             $isExistingSite = false;
         }
         $articleSite->setArticleId($article->getId());
         if ($articleSiteData['siteSelect'] == "OTHER") {
             $trialSite = new TrialSite();
             $trialSite->setName($articleSiteData['siteName']);
             $trialSite->setAddress($articleSiteData['siteAddress']);
             $trialSite->setCity($articleSiteData['siteCity']);
             $trialSite->setRegion($articleSiteData['siteRegion']);
             $trialSite->setLicensure($articleSiteData['siteLicensure']);
             $trialSite->setAccreditation($articleSiteData['siteAccreditation']);
             $articleSite->setSiteId($this->trialSiteDao->insertTrialSite($trialSite));
         } else {
             $articleSite->setSiteId($articleSiteData['siteSelect']);
         }
         $articleSite->setAuthority($articleSiteData['authority']);
         $articleSite->setERCId($articleSiteData['erc']);
         $articleSite->setPrimaryPhone($articleSiteData['primaryPhone']);
         $articleSite->setSecondaryPhone($articleSiteData['secondaryPhone']);
         $articleSite->setFax($articleSiteData['fax']);
         $articleSite->setEmail($articleSiteData['email']);
         $articleSite->setSubjectsNumber($articleSiteData['subjectsNumber']);
         $investigatorsData = $articleSiteData['investigators'];
         $investigators = $articleSite->getInvestigators();
         // Remove deleted investigators
         foreach ($investigators as $investigator) {
             $isPresent = false;
             foreach ($investigatorsData as $investigatorData) {
                 if (!empty($investigatorData['id'])) {
                     if ($investigator->getId() == $investigatorData['id']) {
                         $isPresent = true;
                     }
                 }
             }
             if (!$isPresent) {
                 $articleSite->removeInvestigator($investigator->getId());
             }
             unset($isPresent);
             unset($investigator);
         }
         // Update / Insert Investigators
         $investigatorIterator = 1;
         foreach ($investigatorsData as $investigatorData) {
             if (isset($investigatorData['id'])) {
                 $investigator = $articleSite->getInvestigator($investigatorData['id']);
             } else {
                 $investigator = new Author();
             }
             if ($isExistingSite) {
                 $investigator->setSiteId($articleSite->getId());
             }
             if ($investigatorIterator == 1) {
                 $investigator->setPrimaryContact(1);
             }
             $investigator->setSequence($investigatorIterator);
             $investigator->setFirstName($investigatorData['firstName']);
             $investigator->setLastName($investigatorData['lastName']);
             $investigator->setExpertise($investigatorData['expertise']);
             $investigator->setPrimaryPhoneNumber($investigatorData['iPrimaryPhone']);
             $investigator->setSecondaryPhoneNumber($investigatorData['iSecondaryPhone']);
             $investigator->setFaxNumber($investigatorData['iFax']);
             $investigator->setEmail($investigatorData['iEmail']);
             $articleSite->addInvestigator($investigator);
             $investigatorIterator++;
         }
         $article->addArticleSite($articleSite);
     }
     //update step
     if ($article->getSubmissionProgress() <= $this->step) {
         $article->stampStatusModified();
         $article->setSubmissionProgress($this->step + 1);
     } elseif ($article->getSubmissionProgress() == 9) {
         $article->setSubmissionProgress(8);
     }
     parent::execute();
     // Save the article
     $articleDao->updateArticle($article);
     return $this->articleId;
 }
示例#27
0
 /**
  * Save changes to article.
  * @param $request PKPRequest
  * @return int the article ID
  */
 function execute(&$request)
 {
     $articleDao =& DAORegistry::getDAO('ArticleDAO');
     $article =& $this->article;
     // Retrieve the previous citation list for comparison.
     $previousRawCitationList = $article->getCitations();
     ///////////////////////////////////////////
     ////////////// Update Authors /////////////
     ///////////////////////////////////////////
     $authors = $this->getData('authors');
     for ($i = 0, $count = count($authors); $i < $count; $i++) {
         if ($authors[$i]['authorId'] > 0) {
             // Update an existing author
             $author =& $article->getAuthor($authors[$i]['authorId']);
             $isExistingAuthor = true;
         } else {
             // Create a new author
             $author = new Author();
             $isExistingAuthor = false;
         }
         if ($author != null) {
             $author->setSubmissionId($article->getId());
             if (isset($authors[$i]['firstName'])) {
                 $author->setFirstName($authors[$i]['firstName']);
             }
             if (isset($authors[$i]['middleName'])) {
                 $author->setMiddleName($authors[$i]['middleName']);
             }
             if (isset($authors[$i]['lastName'])) {
                 $author->setLastName($authors[$i]['lastName']);
             }
             if (isset($authors[$i]['affiliation'])) {
                 $author->setAffiliation($authors[$i]['affiliation']);
             }
             if (isset($authors[$i]['phone'])) {
                 $author->setPhoneNumber($authors[$i]['phone']);
             }
             if (isset($authors[$i]['email'])) {
                 $author->setEmail($authors[$i]['email']);
             }
             $author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0);
             $author->setSequence($authors[$i]['seq']);
             if ($isExistingAuthor == false) {
                 $article->addAuthor($author);
             }
         }
         unset($author);
     }
     // Remove deleted authors
     $deletedAuthors = explode(':', $this->getData('deletedAuthors'));
     for ($i = 0, $count = count($deletedAuthors); $i < $count; $i++) {
         $article->removeAuthor($deletedAuthors[$i]);
     }
     ///////////////////////////////////////////
     //////////// Update Abstract(s) ///////////
     ///////////////////////////////////////////
     import('classes.article.ProposalAbstract');
     $journal = Request::getJournal();
     $abstracts = $this->getData('abstracts');
     foreach ($journal->getSupportedLocaleNames() as $localeKey => $localeValue) {
         if ($abstracts[$localeKey]['abstractId'] > 0) {
             $abstract = $article->getAbstractByLocale($localeKey);
             $isExistingAbstract = true;
         } else {
             $abstract = new ProposalAbstract();
             $isExistingAbstract = false;
         }
         if ($abstract != null) {
             $abstract->setArticleId($article->getId());
             $abstract->setLocale($localeKey);
             $abstract->setScientificTitle($abstracts[$localeKey]['scientificTitle']);
             $abstract->setPublicTitle($abstracts[$localeKey]['publicTitle']);
             $abstract->setBackground($abstracts[$localeKey]['background']);
             $abstract->setObjectives($abstracts[$localeKey]['objectives']);
             $abstract->setStudyMethods($abstracts[$localeKey]['studyMethods']);
             $abstract->setExpectedOutcomes($abstracts[$localeKey]['expectedOutcomes']);
             $abstract->setKeywords($abstracts[$localeKey]['keywords']);
             if ($isExistingAbstract == false) {
                 $article->addAbstract($abstract);
             }
         }
         unset($abstract);
     }
     ///////////////////////////////////////////
     ///////// Update Proposal Details /////////
     ///////////////////////////////////////////
     $proposalDetailsData = $this->getData('proposalDetails');
     import('classes.article.ProposalDetails');
     $proposalDetails = new ProposalDetails();
     $institutionDao =& DAORegistry::getDAO('InstitutionDAO');
     import('classes.journal.Institution');
     $proposalDetails->setArticleId($article->getId());
     $proposalDetails->setStudentResearch($proposalDetailsData['studentInitiatedResearch']);
     $proposalDetails->setStartDate($proposalDetailsData['startDate']);
     $proposalDetails->setEndDate($proposalDetailsData['endDate']);
     if ($proposalDetailsData['keyImplInstitution'] == "OTHER") {
         $institution = new Institution();
         $institution->setInstitutionName($proposalDetailsData['otherInstitutionName']);
         $institution->setInstitutionAcronym($proposalDetailsData['otherInstitutionAcronym']);
         $institution->setInstitutionType($proposalDetailsData['otherInstitutionType']);
         $institution->setInstitutionInternational($proposalDetailsData['international']);
         if ($proposalDetailsData['international'] == INSTITUTION_NATIONAL) {
             $institution->setInstitutionLocation($proposalDetailsData['locationCountry']);
         } elseif ($proposalDetailsData['international'] == INSTITUTION_INTERNATIONAL) {
             $institution->setInstitutionLocation($proposalDetailsData['locationInternational']);
         }
         $institutionId = $institutionDao->insertInstitution($institution);
         $proposalDetails->setKeyImplInstitution($institutionId);
         unset($institution);
     } else {
         $proposalDetails->setKeyImplInstitution($proposalDetailsData['keyImplInstitution']);
     }
     $proposalDetails->setMultiCountryResearch($proposalDetailsData['multiCountryResearch']);
     if ($proposalDetailsData['multiCountryResearch'] == PROPOSAL_DETAIL_YES) {
         $countriesArray = $proposalDetailsData['countries'];
         $countries = implode(",", $countriesArray);
         $proposalDetails->setCountries($countries);
     }
     $proposalDetails->setNationwide($proposalDetailsData['nationwide']);
     if ($proposalDetailsData['nationwide'] != PROPOSAL_DETAIL_YES) {
         $geoAreasArray = $proposalDetailsData['geoAreas'];
         $proposalDetails->setGeoAreasFromArray($geoAreasArray);
     }
     $researchDomainsArray = $proposalDetailsData['researchDomains'];
     $proposalDetails->setResearchDomainsFromArray($researchDomainsArray);
     $researchFieldsArray = $proposalDetailsData['researchFields'];
     foreach ($researchFieldsArray as $i => $field) {
         if ($field == "OTHER") {
             $otherField = $proposalDetailsData['otherResearchField'];
             if ($otherField != "") {
                 $researchFieldsArray[$i] = "Other (" . $otherField . ")";
             }
         }
     }
     $proposalDetails->setResearchFieldsFromArray($researchFieldsArray);
     $proposalDetails->setHumanSubjects($proposalDetailsData['withHumanSubjects']);
     if ($proposalDetailsData['withHumanSubjects'] == PROPOSAL_DETAIL_YES) {
         $proposalTypesArray = $proposalDetailsData['proposalTypes'];
         foreach ($proposalTypesArray as $i => $type) {
             if ($type == "OTHER") {
                 $otherType = $proposalDetailsData['otherProposalType'];
                 if ($otherType != "") {
                     $proposalTypesArray[$i] = "Other (" . $otherType . ")";
                 }
             }
         }
         $proposalDetails->setProposalTypesFromArray($proposalTypesArray);
     }
     $proposalDetails->setDataCollection($proposalDetailsData['dataCollection']);
     if ($proposalDetailsData['reviewedByOtherErc'] == PROPOSAL_DETAIL_YES) {
         $proposalDetails->setCommitteeReviewed($proposalDetailsData['otherErcDecision']);
     } else {
         $proposalDetails->setCommitteeReviewed(PROPOSAL_DETAIL_NO);
     }
     // Update or insert student research
     import('classes.article.StudentResearch');
     $studentResearchInfo = new StudentResearch();
     $studentResearchInfo->setArticleId($article->getId());
     $studentResearchData = $this->getData('studentResearch');
     $studentResearchInfo->setInstitution($studentResearchData['studentInstitution']);
     $studentResearchInfo->setDegree($studentResearchData['academicDegree']);
     $studentResearchInfo->setSupervisorName($studentResearchData['supervisorName']);
     $studentResearchInfo->setSupervisorEmail($studentResearchData['supervisorEmail']);
     $proposalDetails->setStudentResearchInfo($studentResearchInfo);
     $article->setProposalDetails($proposalDetails);
     ///////////////////////////////////////////
     //////// Update Sources of Monetary ///////
     ///////////////////////////////////////////
     $sources = $article->getSources();
     $sourcesData = $this->getData('sources');
     //Remove sources
     foreach ($sources as $source) {
         $isPresent = false;
         foreach ($sourcesData as $sourceData) {
             if (!empty($sourceData['sourceId'])) {
                 if ($source->getSourceId() == $sourceData['sourceId']) {
                     $isPresent = true;
                 }
             }
         }
         if (!$isPresent) {
             $article->removeSource($source->getSourceId());
         }
         unset($source);
     }
     for ($i = 0, $count = count($sourcesData); $i < $count; $i++) {
         if (!empty($sourcesData[$i]['sourceId'])) {
             // Update an existing source
             $source =& $article->getSource($sourcesData[$i]['sourceId']);
             $isExistingSource = true;
         } else {
             // Create a new source
             $source = new ProposalSource();
             $isExistingSource = false;
         }
         if ($source != null) {
             $source->setArticleId($article->getId());
             if ($sourcesData[$i]['institution'] == "OTHER") {
                 $institution = new Institution();
                 $institution->setInstitutionName($sourcesData[$i]['otherInstitutionName']);
                 $institution->setInstitutionAcronym($sourcesData[$i]['otherInstitutionAcronym']);
                 $institution->setInstitutionType($sourcesData[$i]['otherInstitutionType']);
                 $institution->setInstitutionInternational($sourcesData[$i]['international']);
                 if ($sourcesData[$i]['international'] == INSTITUTION_NATIONAL) {
                     $institution->setInstitutionLocation($sourcesData[$i]['locationCountry']);
                 } elseif ($proposalDetailsData['international'] == INSTITUTION_INTERNATIONAL) {
                     $institution->setInstitutionLocation($sourcesData[$i]['locationInternational']);
                 }
                 $institutionId = $institutionDao->insertInstitution($institution);
                 $source->setInstitutionId($institutionId);
                 unset($institution);
             } elseif ($sourcesData[$i]['institution'] == "KII") {
                 $source->setInstitutionId($proposalDetails->getKeyImplInstitution());
             } else {
                 $source->setInstitutionId($sourcesData[$i]['institution']);
             }
             $source->setSourceAmount($sourcesData[$i]['amount']);
             if (!$isExistingSource) {
                 $article->addSource($source);
             }
         }
         unset($source);
     }
     ///////////////////////////////////////////
     ///////////// Risk Assessment /////////////
     ///////////////////////////////////////////
     import('classes.article.RiskAssessment');
     $riskAssessment = new RiskAssessment();
     $riskAssessmentData = $this->getData('riskAssessment');
     $riskAssessment->setArticleId($article->getId());
     $riskAssessment->setIdentityRevealed($riskAssessmentData['identityRevealed']);
     $riskAssessment->setUnableToConsent($riskAssessmentData['unableToConsent']);
     $riskAssessment->setUnder18($riskAssessmentData['under18']);
     $riskAssessment->setDependentRelationship($riskAssessmentData['dependentRelationship']);
     $riskAssessment->setEthnicMinority($riskAssessmentData['ethnicMinority']);
     $riskAssessment->setImpairment($riskAssessmentData['impairment']);
     $riskAssessment->setPregnant($riskAssessmentData['pregnant']);
     $riskAssessment->setNewTreatment($riskAssessmentData['newTreatment']);
     $riskAssessment->setBioSamples($riskAssessmentData['bioSamples']);
     $riskAssessment->setExportHumanTissue($riskAssessmentData['exportHumanTissue']);
     $riskAssessment->setExportReason($riskAssessmentData['exportReason']);
     $riskAssessment->setRadiation($riskAssessmentData['radiation']);
     $riskAssessment->setDistress($riskAssessmentData['distress']);
     $riskAssessment->setInducements($riskAssessmentData['inducements']);
     $riskAssessment->setSensitiveInfo($riskAssessmentData['sensitiveInfo']);
     $riskAssessment->setReproTechnology($riskAssessmentData['reproTechnology']);
     $riskAssessment->setGenetic($riskAssessmentData['genetic']);
     $riskAssessment->setStemCell($riskAssessmentData['stemCell']);
     $riskAssessment->setBiosafety($riskAssessmentData['biosafety']);
     $riskAssessment->setRiskLevel($riskAssessmentData['riskLevel']);
     $riskAssessment->setListRisks($riskAssessmentData['listRisks']);
     $riskAssessment->setHowRisksMinimized($riskAssessmentData['howRisksMinimized']);
     $riskAssessment->setRisksToTeam(isset($riskAssessmentData['risksToTeam']) ? 1 : 0);
     $riskAssessment->setRisksToSubjects(isset($riskAssessmentData['risksToSubjects']) ? 1 : 0);
     $riskAssessment->setRisksToCommunity(isset($riskAssessmentData['risksToCommunity']) ? 1 : 0);
     $riskAssessment->setBenefitsToParticipants(isset($riskAssessmentData['benefitsToParticipants']) ? 1 : 0);
     $riskAssessment->setKnowledgeOnCondition(isset($riskAssessmentData['knowledgeOnCondition']) ? 1 : 0);
     $riskAssessment->setKnowledgeOnDisease(isset($riskAssessmentData['knowledgeOnDisease']) ? 1 : 0);
     $riskAssessment->setMultiInstitutions($riskAssessmentData['multiInstitutions']);
     $riskAssessment->setConflictOfInterest($riskAssessmentData['conflictOfInterest']);
     $article->setRiskAssessment($riskAssessment);
     parent::execute();
     // Save the article
     $articleDao->updateArticle($article);
     // Update references list if it changed.
     $citationDao =& DAORegistry::getDAO('CitationDAO');
     $rawCitationList = $article->getCitations();
     if ($previousRawCitationList != $rawCitationList) {
         $citationDao->importCitations($request, ASSOC_TYPE_ARTICLE, $article->getId(), $rawCitationList);
     }
 }
 /**
  * Save changes to article.
  * @return int the article ID
  */
 function execute()
 {
     $articleDao =& DAORegistry::getDAO('ArticleDAO');
     if (isset($this->article)) {
         // Update existing article
         $this->article->setSectionId($this->getData('sectionId'));
         $this->article->setLocale($this->getData('locale'));
         $this->article->setCommentsToEditor($this->getData('commentsToEditor'));
         if ($this->article->getSubmissionProgress() <= $this->step) {
             $this->article->stampStatusModified();
             $this->article->setSubmissionProgress($this->step + 1);
         }
         $articleDao->updateArticle($this->article);
     } else {
         // Insert new article
         $journal =& $this->request->getJournal();
         $user =& $this->request->getUser();
         $this->article = new Article();
         $this->article->setLocale($this->getData('locale'));
         $this->article->setUserId($user->getId());
         $this->article->setJournalId($journal->getId());
         $this->article->setSectionId($this->getData('sectionId'));
         $this->article->stampStatusModified();
         $this->article->setSubmissionProgress($this->step + 1);
         $this->article->setLanguage(String::substr($this->article->getLocale(), 0, 2));
         $this->article->setCommentsToEditor($this->getData('commentsToEditor'));
         $articleDao->insertArticle($this->article);
         $this->articleId = $this->article->getId();
         // Set user to initial author
         $authorDao =& DAORegistry::getDAO('AuthorDAO');
         /* @var $authorDao AuthorDAO */
         $user =& $this->request->getUser();
         $author = new Author();
         $author->setSubmissionId($this->articleId);
         $author->setFirstName($user->getFirstName());
         $author->setMiddleName($user->getMiddleName());
         $author->setLastName($user->getLastName());
         $author->setAffiliation($user->getAffiliation(null), null);
         $author->setCountry($user->getCountry());
         $author->setEmail($user->getEmail());
         $author->setData('orcid', $user->getData('orcid'));
         $author->setUrl($user->getUrl());
         $author->setBiography($user->getBiography(null), null);
         $author->setPrimaryContact(1);
         $authorDao->insertAuthor($author);
     }
     return $this->articleId;
 }
 public function testScenarioUsingQuery()
 {
     // Add publisher records
     // ---------------------
     try {
         $scholastic = new Publisher();
         $scholastic->setName("Scholastic");
         // do not save, will do later to test cascade
         $morrow = new Publisher();
         $morrow->setName("William Morrow");
         $morrow->save();
         $morrow_id = $morrow->getId();
         $penguin = new Publisher();
         $penguin->setName("Penguin");
         $penguin->save();
         $penguin_id = $penguin->getId();
         $vintage = new Publisher();
         $vintage->setName("Vintage");
         $vintage->save();
         $vintage_id = $vintage->getId();
         $this->assertTrue(true, 'Save Publisher records');
     } catch (Exception $e) {
         $this->fail('Save publisher records');
     }
     // Add author records
     // ------------------
     try {
         $rowling = new Author();
         $rowling->setFirstName("J.K.");
         $rowling->setLastName("Rowling");
         // do not save, will do later to test cascade
         $stephenson = new Author();
         $stephenson->setFirstName("Neal");
         $stephenson->setLastName("Stephenson");
         $stephenson->save();
         $stephenson_id = $stephenson->getId();
         $byron = new Author();
         $byron->setFirstName("George");
         $byron->setLastName("Byron");
         $byron->save();
         $byron_id = $byron->getId();
         $grass = new Author();
         $grass->setFirstName("Gunter");
         $grass->setLastName("Grass");
         $grass->save();
         $grass_id = $grass->getId();
         $this->assertTrue(true, 'Save Author records');
     } catch (Exception $e) {
         $this->fail('Save Author records');
     }
     // Add book records
     // ----------------
     try {
         $phoenix = new Book();
         $phoenix->setTitle("Harry Potter and the Order of the Phoenix");
         $phoenix->setISBN("043935806X");
         $phoenix->setAuthor($rowling);
         $phoenix->setPublisher($scholastic);
         $phoenix->save();
         $phoenix_id = $phoenix->getId();
         $this->assertFalse($rowling->isNew(), 'saving book also saves related author');
         $this->assertFalse($scholastic->isNew(), 'saving book also saves related publisher');
         $qs = new Book();
         $qs->setISBN("0380977427");
         $qs->setTitle("Quicksilver");
         $qs->setAuthor($stephenson);
         $qs->setPublisher($morrow);
         $qs->save();
         $qs_id = $qs->getId();
         $dj = new Book();
         $dj->setISBN("0140422161");
         $dj->setTitle("Don Juan");
         $dj->setAuthor($byron);
         $dj->setPublisher($penguin);
         $dj->save();
         $dj_id = $qs->getId();
         $td = new Book();
         $td->setISBN("067972575X");
         $td->setTitle("The Tin Drum");
         $td->setAuthor($grass);
         $td->setPublisher($vintage);
         $td->save();
         $td_id = $td->getId();
         $this->assertTrue(true, 'Save Book records');
     } catch (Exception $e) {
         $this->fail('Save Author records');
     }
     // Add review records
     // ------------------
     try {
         $r1 = new Review();
         $r1->setBook($phoenix);
         $r1->setReviewedBy("Washington Post");
         $r1->setRecommended(true);
         $r1->setReviewDate(time());
         $r1->save();
         $r1_id = $r1->getId();
         $r2 = new Review();
         $r2->setBook($phoenix);
         $r2->setReviewedBy("New York Times");
         $r2->setRecommended(false);
         $r2->setReviewDate(time());
         $r2->save();
         $r2_id = $r2->getId();
         $this->assertTrue(true, 'Save Review records');
     } catch (Exception $e) {
         $this->fail('Save Review records');
     }
     // Perform a "complex" search
     // --------------------------
     $results = BookQuery::create()->filterByTitle('Harry%')->find();
     $this->assertEquals(1, count($results));
     $results = BookQuery::create()->where('Book.ISBN IN ?', array("0380977427", "0140422161"))->find();
     $this->assertEquals(2, count($results));
     // Perform a "limit" search
     // ------------------------
     $results = BookQuery::create()->limit(2)->offset(1)->orderByTitle()->find();
     $this->assertEquals(2, count($results));
     // we ordered on book title, so we expect to get
     $this->assertEquals("Harry Potter and the Order of the Phoenix", $results[0]->getTitle());
     $this->assertEquals("Quicksilver", $results[1]->getTitle());
     // Perform a lookup & update!
     // --------------------------
     // Updating just-created book title
     // First finding book by PK (=$qs_id) ....
     $qs_lookup = BookQuery::create()->findPk($qs_id);
     $this->assertNotNull($qs_lookup, 'just-created book can be found by pk');
     $new_title = "Quicksilver (" . crc32(uniqid(rand())) . ")";
     // Attempting to update found object
     $qs_lookup->setTitle($new_title);
     $qs_lookup->save();
     // Making sure object was correctly updated: ";
     $qs_lookup2 = BookQuery::create()->findPk($qs_id);
     $this->assertEquals($new_title, $qs_lookup2->getTitle());
     // Test some basic DATE / TIME stuff
     // ---------------------------------
     // that's the control timestamp.
     $control = strtotime('2004-02-29 00:00:00');
     // should be two in the db
     $r = ReviewQuery::create()->findOne();
     $r_id = $r->getId();
     $r->setReviewDate($control);
     $r->save();
     $r2 = ReviewQuery::create()->findPk($r_id);
     $this->assertEquals(new Datetime('2004-02-29 00:00:00'), $r2->getReviewDate(null), 'ability to fetch DateTime');
     $this->assertEquals($control, $r2->getReviewDate('U'), 'ability to fetch native unix timestamp');
     $this->assertEquals('2-29-2004', $r2->getReviewDate('n-j-Y'), 'ability to use date() formatter');
     // Handle BLOB/CLOB Columns
     // ------------------------
     $blob_path = dirname(__FILE__) . '/../../etc/lob/tin_drum.gif';
     $blob2_path = dirname(__FILE__) . '/../../etc/lob/propel.gif';
     $clob_path = dirname(__FILE__) . '/../../etc/lob/tin_drum.txt';
     $m1 = new Media();
     $m1->setBook($phoenix);
     $m1->setCoverImage(file_get_contents($blob_path));
     $m1->setExcerpt(file_get_contents($clob_path));
     $m1->save();
     $m1_id = $m1->getId();
     $m1_lookup = MediaQuery::create()->findPk($m1_id);
     $this->assertNotNull($m1_lookup, 'Can find just-created media item');
     $this->assertEquals(md5(file_get_contents($blob_path)), md5(stream_get_contents($m1_lookup->getCoverImage())), 'BLOB was correctly updated');
     $this->assertEquals(file_get_contents($clob_path), (string) $m1_lookup->getExcerpt(), 'CLOB was correctly updated');
     // now update the BLOB column and save it & check the results
     $m1_lookup->setCoverImage(file_get_contents($blob2_path));
     $m1_lookup->save();
     $m2_lookup = MediaQuery::create()->findPk($m1_id);
     $this->assertNotNull($m2_lookup, 'Can find just-created media item');
     $this->assertEquals(md5(file_get_contents($blob2_path)), md5(stream_get_contents($m2_lookup->getCoverImage())), 'BLOB was correctly overwritten');
     // Test Validators
     // ---------------
     require_once 'tools/helpers/bookstore/validator/ISBNValidator.php';
     $bk1 = new Book();
     $bk1->setTitle("12345");
     // min length is 10
     $ret = $bk1->validate();
     $this->assertFalse($ret, 'validation failed');
     $failures = $bk1->getValidationFailures();
     $this->assertEquals(1, count($failures), '1 validation message was returned');
     $el = array_shift($failures);
     $this->assertContains("must be more than", $el->getMessage(), 'Expected validation message was returned');
     $bk2 = new Book();
     $bk2->setTitle("Don Juan");
     $ret = $bk2->validate();
     $this->assertFalse($ret, 'validation failed');
     $failures = $bk2->getValidationFailures();
     $this->assertEquals(1, count($failures), '1 validation message was returned');
     $el = array_shift($failures);
     $this->assertContains("Book title already in database.", $el->getMessage(), 'Expected validation message was returned');
     //Now trying some more complex validation.
     $auth1 = new Author();
     $auth1->setFirstName("Hans");
     // last name required; will fail
     $bk1->setAuthor($auth1);
     $rev1 = new Review();
     $rev1->setReviewDate("08/09/2001");
     // will fail: reviewed_by column required
     $bk1->addReview($rev1);
     $ret2 = $bk1->validate();
     $this->assertFalse($ret2, 'validation failed');
     $failures2 = $bk1->getValidationFailures();
     $this->assertEquals(3, count($failures2), '3 validation messages were returned');
     $expectedKeys = array(AuthorPeer::LAST_NAME, BookPeer::TITLE, ReviewPeer::REVIEWED_BY);
     $this->assertEquals($expectedKeys, array_keys($failures2), 'correct columns failed');
     $bk2 = new Book();
     $bk2->setTitle("12345678901");
     // passes
     $auth2 = new Author();
     $auth2->setLastName("Blah");
     //passes
     $auth2->setEmail("*****@*****.**");
     //passes
     $auth2->setAge(50);
     //passes
     $bk2->setAuthor($auth2);
     $rev2 = new Review();
     $rev2->setReviewedBy("Me!");
     // passes
     $rev2->setStatus("new");
     // passes
     $bk2->addReview($rev2);
     $ret3 = $bk2->validate();
     $this->assertTrue($ret3, 'complex validation can pass');
     // Testing doCount() functionality
     // -------------------------------
     // old way
     $c = new Criteria();
     $records = BookPeer::doSelect($c);
     $count = BookPeer::doCount($c);
     $this->assertEquals($count, count($records), 'correct number of results');
     // new way
     $count = BookQuery::create()->count();
     $this->assertEquals($count, count($records), 'correct number of results');
     // Test many-to-many relationships
     // ---------------
     // init book club list 1 with 2 books
     $blc1 = new BookClubList();
     $blc1->setGroupLeader("Crazyleggs");
     $blc1->setTheme("Happiness");
     $brel1 = new BookListRel();
     $brel1->setBook($phoenix);
     $brel2 = new BookListRel();
     $brel2->setBook($dj);
     $blc1->addBookListRel($brel1);
     $blc1->addBookListRel($brel2);
     $blc1->save();
     $this->assertNotNull($blc1->getId(), 'BookClubList 1 was saved');
     // init book club list 2 with 1 book
     $blc2 = new BookClubList();
     $blc2->setGroupLeader("John Foo");
     $blc2->setTheme("Default");
     $brel3 = new BookListRel();
     $brel3->setBook($phoenix);
     $blc2->addBookListRel($brel3);
     $blc2->save();
     $this->assertNotNull($blc2->getId(), 'BookClubList 2 was saved');
     // re-fetch books and lists from db to be sure that nothing is cached
     $crit = new Criteria();
     $crit->add(BookPeer::ID, $phoenix->getId());
     $phoenix = BookPeer::doSelectOne($crit);
     $this->assertNotNull($phoenix, "book 'phoenix' has been re-fetched from db");
     $crit = new Criteria();
     $crit->add(BookClubListPeer::ID, $blc1->getId());
     $blc1 = BookClubListPeer::doSelectOne($crit);
     $this->assertNotNull($blc1, 'BookClubList 1 has been re-fetched from db');
     $crit = new Criteria();
     $crit->add(BookClubListPeer::ID, $blc2->getId());
     $blc2 = BookClubListPeer::doSelectOne($crit);
     $this->assertNotNull($blc2, 'BookClubList 2 has been re-fetched from db');
     $relCount = $phoenix->countBookListRels();
     $this->assertEquals(2, $relCount, "book 'phoenix' has 2 BookListRels");
     $relCount = $blc1->countBookListRels();
     $this->assertEquals(2, $relCount, 'BookClubList 1 has 2 BookListRels');
     $relCount = $blc2->countBookListRels();
     $this->assertEquals(1, $relCount, 'BookClubList 2 has 1 BookListRel');
     // Cleanup (tests DELETE)
     // ----------------------
     // Removing books that were just created
     // First finding book by PK (=$phoenix_id) ....
     $hp = BookQuery::create()->findPk($phoenix_id);
     $this->assertNotNull($hp, 'Could find just-created book');
     // Attempting to delete [multi-table] by found pk
     $c = new Criteria();
     $c->add(BookPeer::ID, $hp->getId());
     // The only way for cascading to work currently
     // is to specify the author_id and publisher_id (i.e. the fkeys
     // have to be in the criteria).
     $c->add(AuthorPeer::ID, $hp->getAuthor()->getId());
     $c->add(PublisherPeer::ID, $hp->getPublisher()->getId());
     $c->setSingleRecord(true);
     BookPeer::doDelete($c);
     // Checking to make sure correct records were removed.
     $this->assertEquals(3, AuthorPeer::doCount(new Criteria()), 'Correct records were removed from author table');
     $this->assertEquals(3, PublisherPeer::doCount(new Criteria()), 'Correct records were removed from publisher table');
     $this->assertEquals(3, BookPeer::doCount(new Criteria()), 'Correct records were removed from book table');
     // Attempting to delete books by complex criteria
     BookQuery::create()->filterByISBN("043935806X")->orWhere('Book.ISBN = ?', "0380977427")->orWhere('Book.ISBN = ?', "0140422161")->delete();
     // Attempting to delete book [id = $td_id]
     $td->delete();
     // Attempting to delete authors
     AuthorQuery::create()->filterById($stephenson_id)->delete();
     AuthorQuery::create()->filterById($byron_id)->delete();
     $grass->delete();
     // Attempting to delete publishers
     PublisherQuery::create()->filterById($morrow_id)->delete();
     PublisherQuery::create()->filterById($penguin_id)->delete();
     $vintage->delete();
     // These have to be deleted manually also since we have onDelete
     // set to SETNULL in the foreign keys in book. Is this correct?
     $rowling->delete();
     $scholastic->delete();
     $blc1->delete();
     $blc2->delete();
     $this->assertEquals(array(), AuthorPeer::doSelect(new Criteria()), 'no records in [author] table');
     $this->assertEquals(array(), PublisherPeer::doSelect(new Criteria()), 'no records in [publisher] table');
     $this->assertEquals(array(), BookPeer::doSelect(new Criteria()), 'no records in [book] table');
     $this->assertEquals(array(), ReviewPeer::doSelect(new Criteria()), 'no records in [review] table');
     $this->assertEquals(array(), MediaPeer::doSelect(new Criteria()), 'no records in [media] table');
     $this->assertEquals(array(), BookClubListPeer::doSelect(new Criteria()), 'no records in [book_club_list] table');
     $this->assertEquals(array(), BookListRelPeer::doSelect(new Criteria()), 'no records in [book_x_list] table');
 }
 /**
  * Save changes to submission.
  * @return int the monograph ID
  */
 function execute()
 {
     $monographDao =& DAORegistry::getDAO('MonographDAO');
     if (isset($this->monograph)) {
         // Update existing monograph
         $this->monograph->setSeriesId($this->getData('seriesId'));
         $this->monograph->setLocale($this->getData('locale'));
         $this->monograph->setCommentsToEditor($this->getData('commentsToEditor'));
         if ($this->monograph->getSubmissionProgress() <= $this->step) {
             $this->monograph->stampStatusModified();
             $this->monograph->setSubmissionProgress($this->step + 1);
         }
         $monographDao->updateMonograph($this->monograph);
     } else {
         $press =& Request::getPress();
         $user =& Request::getUser();
         // Get the session and the user group id currently used
         $sessionMgr =& SessionManager::getManager();
         $session =& $sessionMgr->getUserSession();
         // Create new monograph
         $this->monograph = new Monograph();
         $this->monograph->setLocale($this->getData('locale'));
         $this->monograph->setUserId($user->getId());
         $this->monograph->setPressId($press->getId());
         $this->monograph->setSeriesId($this->getData('seriesId'));
         $this->monograph->stampStatusModified();
         $this->monograph->setSubmissionProgress($this->step + 1);
         $this->monograph->setLanguage(String::substr($this->monograph->getLocale(), 0, 2));
         $this->monograph->setCommentsToEditor($this->getData('commentsToEditor'));
         $this->monograph->setWorkType($this->getData('isEditedVolume') ? WORK_TYPE_EDITED_VOLUME : WORK_TYPE_AUTHORED_WORK);
         $this->monograph->setCurrentStageId(WORKFLOW_STAGE_ID_SUBMISSION);
         // Get a default user group id for an Author
         $userGroupDao =& DAORegistry::getDAO('UserGroupDAO');
         $defaultAuthorGroup =& $userGroupDao->getDefaultByRoleId($press->getId(), ROLE_ID_AUTHOR);
         // Set user to initial author
         $authorDao =& DAORegistry::getDAO('AuthorDAO');
         $user =& Request::getUser();
         $author = new Author();
         $author->setFirstName($user->getFirstName());
         $author->setMiddleName($user->getMiddleName());
         $author->setLastName($user->getLastName());
         $author->setAffiliation($user->getAffiliation(null), null);
         $author->setCountry($user->getCountry());
         $author->setEmail($user->getEmail());
         $author->setUrl($user->getUrl());
         $author->setUserGroupId($defaultAuthorGroup->getId());
         $author->setBiography($user->getBiography(null), null);
         $author->setPrimaryContact(1);
         $monographDao->insertMonograph($this->monograph);
         $this->monographId = $this->monograph->getId();
         $author->setSubmissionId($this->monographId);
         $authorDao->insertAuthor($author);
     }
     return $this->monographId;
 }