public function testUselessFileDetectorSendKeys()
{
$this->driver->get($this->getTestPath('upload.html'));
$file_input = $this->driver->findElement(WebDriverBy::id('upload'));
$file_input->sendKeys($this->getFilePath());
self::assertEquals($this->getFilePath(), $file_input->getAttribute('value'));
}
/**
* @param $web
* @param $input_id
* @param $value
* @return mixed
*/
function write_in_input(RemoteWebDriver $web, $input_id, $value)
{
$input = $web->findElement(WebDriverBy::id($input_id));
$input->click();
$web->getKeyboard()->sendKeys($value);
return $input;
}
public function testAddSummaryVariantOnlyDescribedOnGenomicLevel()
{
// Wait for redirect
$this->waitUntil(WebDriverExpectedCondition::titleContains("View genomic variant"));
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/variants\\/0000000003$/', $this->driver->getCurrentURL()));
$element = $this->driver->findElement(WebDriverBy::id("tab_submit"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/submit$/', $this->driver->getCurrentURL()));
$element = $this->driver->findElement(WebDriverBy::xpath("//div/table/tbody/tr/td/table/tbody/tr[2]/td[2]/b"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*Please reconsider to submit individual data as well, as it makes the data you submit much more valuable![\\s\\S]*$/', $this->getConfirmation()));
$this->chooseOkOnNextConfirmation();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/variants[\\s\\S]create$/', $this->driver->getCurrentURL()));
$element = $this->driver->findElement(WebDriverBy::xpath("//div/table/tbody/tr/td/table/tbody/tr[2]/td[2]/b"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/variants[\\s\\S]create&reference=Genome$/', $this->driver->getCurrentURL()));
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="allele"]/option[text()="Paternal (confirmed)"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="chromosome"]/option[text()="15"]'));
$option->click();
$this->enterValue(WebDriverBy::name("VariantOnGenome/DNA"), "g.40702976G>T");
$element = $this->driver->findElement(WebDriverBy::linkText("PubMed"));
$element->click();
// Move mouse to let browser hide tooltip of pubmed link (needed for chrome)
$this->driver->getMouse()->mouseMove(null, 200, 200);
$this->enterValue(WebDriverBy::name("VariantOnGenome/Reference"), "{PMID:Fokkema et al (2011):21520333}");
$this->enterValue(WebDriverBy::name("VariantOnGenome/Frequency"), "11/10000");
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="effect_reported"]/option[text()="Effect unknown"]'));
$option->click();
$element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Create variant entry']"));
$element->click();
$this->assertTrue((bool) preg_match('/^Successfully processed your submission and sent an email notification to the relevant curator[\\s\\S]*$/', $this->driver->findElement(WebDriverBy::cssSelector("table[class=info]"))->getText()));
}
public function testPostFinishAddPhenotypeInfoToIVAIndividual()
{
$element = $this->driver->findElement(WebDriverBy::id("tab_individuals"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/individuals\\/IVD$/', $this->driver->getCurrentURL()));
// $element = $this->driver->findElement(WebDriverBy::cssSelector("#00000002 > td.ordered"));
$element = $this->driver->findElement(WebDriverBy::xpath("//td[text()='00000002']"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/individuals\\/00000002$/', $this->driver->getCurrentURL()));
$element = $this->driver->findElement(WebDriverBy::id("viewentryOptionsButton_Individuals"));
$element->click();
$element = $this->driver->findElement(WebDriverBy::linkText("Add phenotype information to individual"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/phenotypes[\\s\\S]create&target=00000002$/', $this->driver->getCurrentURL()));
$this->enterValue(WebDriverBy::name("Phenotype/Additional"), "Additional phenotype information");
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="Phenotype/Inheritance"]/option[text()="Familial"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="owned_by"]/option[text()="LOVD3 Admin (#00001)"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="statusid"]/option[text()="Public"]'));
$option->click();
$element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Create phenotype information entry']"));
$element->click();
$this->assertTrue((bool) preg_match('/^Successfully processed your submission and sent an email notification to the relevant curator[\\s\\S]*$/', $this->driver->findElement(WebDriverBy::cssSelector("table[class=info]"))->getText()));
// Wait for page redirect.
$this->waitUntil(WebDriverExpectedCondition::titleContains("View phenotype"));
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/phenotypes\\/0000000003$/', $this->driver->getCurrentURL()));
}
function test1()
{
$user = new User();
$user->setEmail("*****@*****.**");
$user->setUsername("test");
$user->setPassword("ouhosu");
$this->em->persist($user);
$tree = new Tree();
$tree->setTitleAdmin('Tree');
$tree->setPublicId('tree');
$tree->setOwner($user);
$this->em->persist($tree);
$treeVersion = new TreeVersion();
$treeVersion->setTree($tree);
$treeVersion->setPublicId('version');
$this->em->persist($treeVersion);
$startNode = new Node();
$startNode->setTreeVersion($treeVersion);
$startNode->setTitle("START HERE");
$startNode->setPublicId('start');
$this->em->persist($startNode);
$endNode = new Node();
$endNode->setTreeVersion($treeVersion);
$endNode->setTitle("END HERE");
$endNode->setPublicId('end');
$this->em->persist($endNode);
$nodeOption = new NodeOption();
$nodeOption->setTitle("LETS GO HERE");
$nodeOption->setTreeVersion($treeVersion);
$nodeOption->setNode($startNode);
$nodeOption->setDestinationNode($endNode);
$nodeOption->setPublicId('option');
$this->em->persist($nodeOption);
$treeVersionPublished = new TreeVersionPublished();
$treeVersionPublished->setTreeVersion($treeVersion);
$treeVersionPublished->setPublishedBy($user);
$this->em->flush();
$tvsn = new TreeVersionStartingNode();
$tvsn->setNode($startNode);
$tvsn->setTreeVersion($treeVersion);
$this->em->persist($tvsn);
$published = new TreeVersionPublished();
$published->setTreeVersion($treeVersion);
$this->em->persist($published);
$this->em->flush();
// ######################################################## LOAD PAGE
$this->driver->get('http://localhost/app_dev.php/tree/tree/demo/cascade');
$startLink = $this->driver->findElement(WebDriverBy::id('StartTreeLink'));
$this->assertEquals('Start Tree!', $startLink->getText());
// ######################################################## Start Tree
$startLink->click();
sleep($this->sleepOnActionWithNetwork);
$nodeTitle = $this->driver->findElement(WebDriverBy::id('DemoHere'));
$this->assertEquals(0, strpos($nodeTitle->getText(), 'START HERE'));
// ######################################################## LOAD PAGE
$this->driver->findElement(WebDriverBy::id('DemoHere'))->findElement(WebDriverBy::cssSelector('option[value="option"]'))->click();
sleep($this->sleepOnActionNoNetwork);
$nodeTitle = $this->driver->findElement(WebDriverBy::id('DemoHere'));
$this->assertGreaterThan(0, strpos($nodeTitle->getText(), 'END HERE'));
}
public function testCreateIndividualDiagnosedWithCMT()
{
$element = $this->driver->findElement(WebDriverBy::id("tab_submit"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/submit$/', $this->driver->getCurrentURL()));
$element = $this->driver->findElement(WebDriverBy::xpath("//div/table/tbody/tr/td/table/tbody/tr/td[2]/b"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/individuals[\\s\\S]create$/', $this->driver->getCurrentURL()));
$this->enterValue(WebDriverBy::name("Individual/Lab_ID"), "12345CMT");
$element = $this->driver->findElement(WebDriverBy::linkText("PubMed"));
$element->click();
// Move mouse to let browser hide tooltip of pubmed link (needed for chrome)
$this->driver->getMouse()->mouseMove(null, 200, 200);
$this->enterValue(WebDriverBy::name("Individual/Reference"), "{PMID:Fokkema et al (2011):21520333}");
$this->enterValue(WebDriverBy::name("Individual/Remarks"), "No Remarks");
$this->enterValue(WebDriverBy::name("Individual/Remarks_Non_Public"), "Still no remarks");
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="active_diseases[]"]/option[text()="CMT (Charcot Marie Tooth Disease)"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="owned_by"]/option[text()="LOVD3 Admin (#00001)"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="statusid"]/option[text()="Public"]'));
$option->click();
$element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Create individual information entry']"));
$element->click();
$this->assertEquals("Successfully created the individual information entry!", $this->driver->findElement(WebDriverBy::cssSelector("table[class=info]"))->getText());
}
/**
* Получить токен для полного доступа
* @param $url string
* @param $recursion bool
*/
public function getToken($url, $recursion = true)
{
$this->driver->get($url);
$this->driver->findElement(WebDriverBy::name('email'))->sendKeys($this->login);
$this->driver->findElement(WebDriverBy::name('pass'))->sendKeys($this->password);
$this->driver->findElement(WebDriverBy::id('install_allow'))->click();
sleep(3);
while ($this->driver->findElements(WebDriverBy::xpath('//input[@name=\'captcha_key\']'))) {
$this->captcha();
$this->driver->findElement(WebDriverBy::name('pass'))->sendKeys($this->password);
$this->driver->findElement(WebDriverBy::id('install_allow'))->click();
sleep(3);
}
$this->driver->wait(60, 1000)->until(WebDriverExpectedCondition::titleContains('VK | Request Access'));
$this->driver->findElement(WebDriverBy::id('install_allow'))->click();
$this->driver->wait(60, 1000)->until(WebDriverExpectedCondition::titleContains('OAuth Blank'));
$urlCurrent = $this->driver->getCurrentURL();
$parseUrl = parse_url($urlCurrent);
if (!isset($parseUrl['fragment']) && $recursion == true) {
return $this->getToken($url, false);
}
$query = $parseUrl['fragment'];
parse_str($query, $data);
return $data;
}
public function testPostFinishAddPhenotypeInfoToCMTIndividual()
{
// Wait for redirect
$this->waitUntil(WebDriverExpectedCondition::titleContains("Submission of"));
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/submit\\/screening\\/0000000003$/', $this->driver->getCurrentURL()));
// Move mouse to Individuals tab and click 'view all individuals' option.
$tabElement = $this->driver->findElement(WebDriverBy::id("tab_individuals"));
$this->driver->getMouse()->mouseMove($tabElement->getCoordinates());
$allIndividualsLink = $this->driver->findElement(WebDriverBy::partialLinkText('View all individuals'));
$allIndividualsLink->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/individuals$/', $this->driver->getCurrentURL()));
$element = $this->driver->findElement(WebDriverBy::cssSelector("td.ordered"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/individuals\\/00000001$/', $this->driver->getCurrentURL()));
$element = $this->driver->findElement(WebDriverBy::id("viewentryOptionsButton_Individuals"));
$element->click();
$element = $this->driver->findElement(WebDriverBy::linkText("Add phenotype information to individual"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/phenotypes[\\s\\S]create&target=00000001$/', $this->driver->getCurrentURL()));
$this->enterValue(WebDriverBy::name("Phenotype/Additional"), "Additional phenotype information");
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="Phenotype/Inheritance"]/option[text()="Familial"]'));
$option->click();
$element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Create phenotype information entry']"));
$element->click();
$this->assertTrue((bool) preg_match('/^Successfully processed your submission and sent an email notification to the relevant curator[\\s\\S]*$/', $this->driver->findElement(WebDriverBy::cssSelector("table[class=info]"))->getText()));
// Wait for redirect
$this->waitUntil(WebDriverExpectedCondition::titleContains("View phenotype"));
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/phenotypes\\/0000000002$/', $this->driver->getCurrentURL()));
}
/**
* Test homepage goes to projects page.
*
*/
public function testHomepageProjects()
{
# Get homepage url.
$this->driver->get('http://docs.seleniumhq.org/');
# Click projects menu link.
$link = $this->driver->findElement(WebDriverBy::id('menu_projects'));
$link->click();
# Assert projects url.
$this->assertSame('http://docs.seleniumhq.org/projects/', $this->driver->getCurrentURL());
}
public function testSecondInsertImport()
{
$this->driver->get(ROOT_URL . "/src/import");
$this->enterValue(WebDriverBy::name("import"), ROOT_PATH . "../tests/test_data_files/SecondInsertImport.txt");
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="mode"]/option[text()="Add only, treat all data as new"]'));
$option->click();
$element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Import file']"));
$element->click();
$this->assertEquals("Done importing!", $this->driver->findElement(WebDriverBy::id("lovd_sql_progress_message_done"))->getText());
}
/**
* Get custom window size
*/
public function testGetCustomWindowSize()
{
$capabilities = [WebDriverCapabilityType::BROWSER_NAME => 'firefox'];
$this->webDriver = RemoteWebDriver::create('http://' . self::HOST . '/wd/hub', $capabilities);
$this->webDriver->manage()->window()->setSize(new WebDriverDimension(640, 900));
$this->webDriver->get('http://whatsmy.browsersize.com/');
$foundWidth = $this->webDriver->findElement(WebDriverBy::id('info_ww'))->getText();
self::assertTrue($foundWidth == 640 || $foundWidth == 632, $foundWidth);
$this->webDriver->quit();
}
/**
* Successful authentication test
*/
public function testSuccessLogin()
{
$this->webDriver->get($this->authenticationPageUrl);
$this->webDriver->findElement(WebDriverBy::id('login'))->sendKeys($this->login);
$this->webDriver->findElement(WebDriverBy::id('password'))->sendKeys($this->password);
$this->webDriver->findElement(WebDriverBy::cssSelector('button[type="submit"]'))->click();
$this->webDriver->wait(5);
$nameElement = $this->webDriver->findElement(WebDriverBy::xpath('/html/body/nav/div[1]/a/div/span[1]'));
$this->assertEquals('Andrei Troskov', $nameElement->getText());
}
public function testUpdatetImport()
{
$this->driver->get(ROOT_URL . "/src/import");
$this->enterValue(WebDriverBy::name("import"), ROOT_PATH . "../tests/test_data_files/UpdateImport.txt");
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="mode"]/option[text()="Update existing data (in beta)"]'));
$option->click();
$element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Import file']"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*The following sections are modified and updated in the database: Columns, Diseases, Individuals, Phenotypes, Screenings, Variants_On_Genome, Variants_On_Transcripts\\.$/', $this->driver->findElement(WebDriverBy::id("lovd_sql_progress_message_done"))->getText()));
}
function test1()
{
$user = new User();
$user->setEmail("*****@*****.**");
$user->setUsername("test");
$user->setPassword("ouhosu");
$this->em->persist($user);
$tree = new Tree();
$tree->setTitleAdmin('Tree');
$tree->setPublicId('tree');
$tree->setOwner($user);
$this->em->persist($tree);
$treeVersion = new TreeVersion();
$treeVersion->setTree($tree);
$treeVersion->setPublicId('version');
$treeVersion->setFeatureLibraryContent(true);
$this->em->persist($treeVersion);
$startNode = new Node();
$startNode->setTreeVersion($treeVersion);
$startNode->setTitle("START HERE");
$startNode->setPublicId('start');
$this->em->persist($startNode);
$libraryContent = new LibraryContent();
$libraryContent->setTreeVersion($treeVersion);
$libraryContent->setBodyText('TREE CONTENT');
$this->em->persist($libraryContent);
$nodeHasLibraryContent = new NodeHasLibraryContent();
$nodeHasLibraryContent->setSort(0);
$nodeHasLibraryContent->setNode($startNode);
$nodeHasLibraryContent->setLibraryContent($libraryContent);
$this->em->persist($nodeHasLibraryContent);
$treeVersionPublished = new TreeVersionPublished();
$treeVersionPublished->setTreeVersion($treeVersion);
$treeVersionPublished->setPublishedBy($user);
$this->em->flush();
$tvsn = new TreeVersionStartingNode();
$tvsn->setNode($startNode);
$tvsn->setTreeVersion($treeVersion);
$this->em->persist($tvsn);
$published = new TreeVersionPublished();
$published->setTreeVersion($treeVersion);
$this->em->persist($published);
$this->em->flush();
// ######################################################## LOAD PAGE
$this->driver->get('http://localhost/app_dev.php/tree/tree/demo');
$startLink = $this->driver->findElement(WebDriverBy::id('StartTreeLink'));
$this->assertEquals('Start Tree!', $startLink->getText());
// ######################################################## Start Tree
$startLink->click();
sleep($this->sleepOnActionWithNetwork);
$nodeTitle = $this->driver->findElement(WebDriverBy::id('DemoHere'))->findElement(WebDriverBy::className('node'))->findElement(WebDriverBy::className('title'));
$this->assertEquals('START HERE', $nodeTitle->getText());
$nodeBody = $this->driver->findElement(WebDriverBy::id('DemoHere'))->findElement(WebDriverBy::className('node'))->findElement(WebDriverBy::className('body'));
$this->assertEquals('TREE CONTENT', $nodeBody->getText());
}
public function testCreateGenderColumn()
{
$this->driver->get(ROOT_URL . "/src/columns/Individual/Gender");
$element = $this->driver->findElement(WebDriverBy::id("viewentryOptionsButton_Columns"));
$element->click();
$element = $this->driver->findElement(WebDriverBy::linkText("Enable column"));
$element->click();
$this->enterValue(WebDriverBy::name("password"), "test1234");
$element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Add/enable custom data column Individual/Gender']"));
$element->click();
}
public function testPostFinishAddVariantOnlyDescribedOnGenomicLevelToCMT()
{
$this->logout();
$this->login('collaborator', 'test1234');
$this->driver->get(ROOT_URL . "/src/");
// Move mouse to Screenings tab and click 'view all screenings' option.
$tabElement = $this->driver->findElement(WebDriverBy::id("tab_screenings"));
$this->driver->getMouse()->mouseMove($tabElement->getCoordinates());
$allVariantsLink = $this->driver->findElement(WebDriverBy::partialLinkText('View all screenings'));
$allVariantsLink->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/screenings$/', $this->driver->getCurrentURL()));
// $element = $this->driver->findElement(WebDriverBy::cssSelector("#0000000002 > td.ordered"));
$element = $this->driver->findElement(WebDriverBy::xpath("//td[text()='0000000002']"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/screenings\\/0000000002$/', $this->driver->getCurrentURL()));
$element = $this->driver->findElement(WebDriverBy::id("viewentryOptionsButton_Screenings"));
$element->click();
$element = $this->driver->findElement(WebDriverBy::linkText("Add variant to screening"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/variants[\\s\\S]create&target=0000000002$/', $this->driver->getCurrentURL()));
$element = $this->driver->findElement(WebDriverBy::xpath("//table[2]/tbody/tr[2]/td[2]/b"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/variants[\\s\\S]create&reference=Genome&target=0000000002$/', $this->driver->getCurrentURL()));
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="allele"]/option[text()="Maternal (confirmed)"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="chromosome"]/option[text()="X"]'));
$option->click();
$this->enterValue(WebDriverBy::name("VariantOnGenome/DNA"), "g.40702876G>T");
$element = $this->driver->findElement(WebDriverBy::linkText("PubMed"));
$element->click();
// Move mouse to let browser hide tooltip of pubmed link (needed for chrome)
$this->driver->getMouse()->mouseMove(null, 200, 200);
$this->enterValue(WebDriverBy::name("VariantOnGenome/Reference"), "{PMID:Fokkema et al (2011):21520333}");
$this->enterValue(WebDriverBy::name("VariantOnGenome/Frequency"), "11/10000");
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="effect_reported"]/option[text()="Effect unknown"]'));
$option->click();
$element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Create variant entry']"));
$element->click();
for ($second = 0;; $second++) {
if ($second >= 60) {
$this->fail("timeout");
}
try {
if ($this->isElementPresent(WebDriverBy::cssSelector("table[class=info]"))) {
break;
}
} catch (Exception $e) {
}
sleep(1);
}
$this->assertTrue((bool) preg_match('/^Successfully processed your submission and sent an email notification to the relevant curator[\\s\\S]*$/', $this->driver->findElement(WebDriverBy::cssSelector("table[class=info]"))->getText()));
}
public function login()
{
$this->driver->get('https://web.skype.com');
$this->driver->wait()->until(function () {
return WebDriverExpectedCondition::presenceOfElementLocated(WebDriverBy::id('username'));
});
$this->driver->findElement(WebDriverBy::id('username'))->sendKeys($this->username);
$this->driver->findElement(WebDriverBy::id('password'))->sendKeys($this->password);
$this->driver->findElement(WebDriverBy::cssSelector('form'))->submit();
$this->waitForSelector('[name=query]');
sleep(15);
return true;
}
public function find(RemoteWebDriver $webDriver)
{
switch ($this->type) {
case self::ID:
return $webDriver->findElement(WebDriverBy::id($this->value));
case self::CSS_SELECTOR:
return $webDriver->findElement(WebDriverBy::cssSelector($this->value));
case self::LINK_TEXT:
return $webDriver->findElement(WebDriverBy::linkText($this->value));
default:
throw new \LogicException('Invalid element search type: ' . $this->type);
}
}
public function testAddSummaryVariantVCFFile()
{
// Mouse hover over Submit tab, to make 'submit new data' link visible.
$tabElement = $this->driver->findElement(WebDriverBy::xpath("//img[@id='tab_submit']"));
$this->driver->getMouse()->mouseMove($tabElement->getCoordinates());
$element = $this->driver->findElement(WebDriverBy::linkText("Submit new data"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/submit$/', $this->driver->getCurrentURL()));
$element = $this->driver->findElement(WebDriverBy::xpath("//div/table/tbody/tr/td/table/tbody/tr[2]/td[2]/b"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*Please reconsider to submit individual data as well, as it makes the data you submit much more valuable![\\s\\S]*$/', $this->getConfirmation()));
$this->chooseOkOnNextConfirmation();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/variants[\\s\\S]create$/', $this->driver->getCurrentURL()));
$element = $this->driver->findElement(WebDriverBy::xpath("//tr[3]/td[2]/b"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/variants\\/upload[\\s\\S]create$/', $this->driver->getCurrentURL()));
$element = $this->driver->findElement(WebDriverBy::xpath("//div/table/tbody/tr/td/table/tbody/tr/td[2]/b"));
$element->click();
$this->driver->get(ROOT_URL . "/src/variants/upload?create&type=VCF");
$this->enterValue(WebDriverBy::name("variant_file"), ROOT_PATH . "../tests/test_data_files/ShortVCFfilev1.vcf");
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="hg_build"]/option[text()="hg19"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="dbSNP_column"]/option[text()="VariantOnGenome/Reference"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="genotype_field"]/option[text()="Use Phred-scaled genotype likelihoods (PL)"]'));
$option->click();
$this->check(WebDriverBy::name("allow_mapping"));
$this->check(WebDriverBy::name("allow_create_genes"));
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="owned_by"]/option[text()="LOVD3 Admin"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="statusid"]/option[text()="Public"]'));
$option->click();
$element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Upload VCF file']"));
$element->click();
$this->assertEquals("25 variants were imported, 1 variant could not be imported.", $this->driver->findElement(WebDriverBy::id("lovd__progress_message"))->getText());
$element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Continue »']"));
$element->click();
$this->assertTrue((bool) preg_match('/^Successfully processed your submission and sent an email notification to the relevant curator[\\s\\S]*$/', $this->driver->findElement(WebDriverBy::cssSelector("table[class=info]"))->getText()));
for ($second = 0;; $second++) {
if ($second >= 600) {
$this->fail("timeout");
}
$this->driver->get(ROOT_URL . "/src/ajax/map_variants.php");
if (strcmp("0 99 There are no variants to map in the database", $this->driver->findElement(WebDriverBy::tagName("body"))->getText())) {
break;
}
$this->assertNotContains("of 25 variants", $this->driver->findElement(WebDriverBy::tagName("body"))->getText());
sleep(1);
}
}
public function testAddVCFFileToCMTIndividual()
{
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/submit\\/screening\\/0000000002$/', $this->driver->getCurrentURL()));
$element = $this->driver->findElement(WebDriverBy::xpath("//div/table/tbody/tr/td/table/tbody/tr[2]/td[2]"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*Are you sure you are done with submitting the variants found with this screening[\\s\\S][\\s\\S]*$/', $this->getConfirmation()));
$this->chooseOkOnNextConfirmation();
$element = $this->driver->findElement(WebDriverBy::xpath("//tr[3]/td[2]/b"));
$element->click();
// $element = $this->driver->findElement(WebDriverBy::cssSelector("#0000000002 > td.ordered"));
$element = $this->driver->findElement(WebDriverBy::xpath("//td[text()='0000000002']"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/variants[\\s\\S]create&target=0000000002$/', $this->driver->getCurrentURL()));
$element = $this->driver->findElement(WebDriverBy::xpath("//tr[3]/td[2]/b"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/variants\\/upload[\\s\\S]create&target=0000000002$/', $this->driver->getCurrentURL()));
$element = $this->driver->findElement(WebDriverBy::xpath("//div/table/tbody/tr/td/table/tbody/tr/td[2]/b"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/variants\\/upload[\\s\\S]create&type=VCF&target=0000000002$/', $this->driver->getCurrentURL()));
$this->enterValue(WebDriverBy::name("variant_file"), ROOT_PATH . "../tests/test_data_files/ShortVCFfilev1.vcf");
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="hg_build"]/option[text()="hg19"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="dbSNP_column"]/option[text()="VariantOnGenome/Reference"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="genotype_field"]/option[text()="Use Phred-scaled genotype likelihoods (PL)"]'));
$option->click();
$this->check(WebDriverBy::name("allow_mapping"));
$this->check(WebDriverBy::name("allow_create_genes"));
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="owned_by"]/option[text()="LOVD3 Admin"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="statusid"]/option[text()="Public"]'));
$option->click();
$element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Upload VCF file']"));
$element->click();
$this->assertEquals("25 variants were imported, 1 variant could not be imported.", $this->driver->findElement(WebDriverBy::id("lovd__progress_message"))->getText());
$element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Continue »']"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/submit\\/screening\\/0000000002$/', $this->driver->getCurrentURL()));
for ($second = 0;; $second++) {
if ($second >= 600) {
$this->fail("timeout");
}
$this->driver->get(ROOT_URL . "/src/ajax/map_variants.php");
if (strcmp("0 99 There are no variants to map in the database", $this->driver->findElement(WebDriverBy::tagName("body"))->getText())) {
break;
}
$this->assertNotContains("of 25 variants", $this->driver->findElement(WebDriverBy::tagName("body"))->getText());
sleep(1);
}
}
public function testAddVCFFileToIVAIndividual()
{
// wait for page redirect
$this->waitUntil(WebDriverExpectedCondition::titleContains("Submission of"));
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/submit\\/screening\\/0000000003$/', $this->driver->getCurrentURL()));
$element = $this->driver->findElement(WebDriverBy::xpath("//div/table/tbody/tr/td/table/tbody/tr/td[2]/b"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/variants[\\s\\S]create&target=0000000003$/', $this->driver->getCurrentURL()));
$element = $this->driver->findElement(WebDriverBy::xpath("//tr[3]/td[2]/b"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/variants\\/upload[\\s\\S]create&target=0000000003$/', $this->driver->getCurrentURL()));
$element = $this->driver->findElement(WebDriverBy::xpath("//div/table/tbody/tr/td/table/tbody/tr/td[2]/b"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/variants\\/upload[\\s\\S]create&type=VCF&target=0000000003$/', $this->driver->getCurrentURL()));
$this->enterValue(WebDriverBy::name("variant_file"), ROOT_PATH . "../tests/test_data_files/ShortVCFfilev1.vcf");
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="hg_build"]/option[text()="hg19"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="dbSNP_column"]/option[text()="VariantOnGenome/Reference"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="genotype_field"]/option[text()="Use Phred-scaled genotype likelihoods (PL)"]'));
$option->click();
$this->check(WebDriverBy::name("allow_mapping"));
$this->check(WebDriverBy::name("allow_create_genes"));
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="owned_by"]/option[text()="LOVD3 Admin"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="statusid"]/option[text()="Public"]'));
$option->click();
$element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Upload VCF file']"));
$element->click();
$this->assertEquals("25 variants were imported, 1 variant could not be imported.", $this->driver->findElement(WebDriverBy::id("lovd__progress_message"))->getText());
$element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Continue »']"));
$element->click();
for ($second = 0;; $second++) {
if ($second >= 600) {
$this->fail("timeout");
}
$this->driver->get(ROOT_URL . "/src/ajax/map_variants.php");
if (strcmp("0 99 There are no variants to map in the database", $this->driver->findElement(WebDriverBy::tagName("body"))->getText())) {
break;
}
$this->assertNotContains("of 25 variants", $this->driver->findElement(WebDriverBy::tagName("body"))->getText());
sleep(1);
}
// Test whether a variant was parsed correctly via mutalyzer.
$this->driver->get(ROOT_URL . '/src/genes/ARSD');
$element = $this->driver->findElement(WebDriverBy::xpath('//tr[@class="data"]/td[text()="X"]'));
$element->click();
$this->waitUntil(WebDriverExpectedCondition::presenceOfElementLocated(WebDriverBy::xpath('//td[text()="p.(Gln318His)"]')));
}
public function testAddSummaryVariantSeattleseqFile()
{
// Mouse hover over Submit tab, to make 'submit new data' link visible.
$tabElement = $this->driver->findElement(WebDriverBy::xpath("//img[@id='tab_submit']"));
$this->driver->getMouse()->mouseMove($tabElement->getCoordinates());
$element = $this->driver->findElement(WebDriverBy::linkText("Submit new data"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/submit$/', $this->driver->getCurrentURL()));
$element = $this->driver->findElement(WebDriverBy::xpath("//div/table/tbody/tr/td/table/tbody/tr[2]/td[2]/b"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*Please reconsider to submit individual data as well, as it makes the data you submit much more valuable![\\s\\S]*$/', $this->getConfirmation()));
$this->chooseOkOnNextConfirmation();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/variants[\\s\\S]create$/', $this->driver->getCurrentURL()));
$element = $this->driver->findElement(WebDriverBy::xpath("//tr[3]/td[2]/b"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/variants\\/upload[\\s\\S]create$/', $this->driver->getCurrentURL()));
$element = $this->driver->findElement(WebDriverBy::xpath("//div/table/tbody/tr/td/table/tbody/tr[2]/td[2]/b"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/variants\\/upload[\\s\\S]create&type=SeattleSeq$/', $this->driver->getCurrentURL()));
$this->enterValue(WebDriverBy::name("variant_file"), ROOT_PATH . "../tests/test_data_files/ShortSeattleSeqAnnotation138v1.txt");
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="hg_build"]/option[text()="hg19"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="dbSNP_column"]/option[text()="VariantOnGenome/Reference"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="autocreate"]/option[text()="Create genes and transcripts"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="owned_by"]/option[text()="LOVD3 Admin"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="statusid"]/option[text()="Public"]'));
$option->click();
$element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Upload SeattleSeq file']"));
$this->clickNoTimeout($element);
for ($second = 0;; $second++) {
if ($second >= 300) {
$this->fail("timeout");
}
try {
if ($this->isElementPresent(WebDriverBy::xpath("//input[@value='Continue »']"))) {
break;
}
} catch (Exception $e) {
}
sleep(1);
}
$this->assertContains("138 variants were imported, 1 variant could not be imported.", $this->driver->findElement(WebDriverBy::id("lovd__progress_message"))->getText());
$element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Continue »']"));
$element->click();
$this->assertTrue((bool) preg_match('/^Successfully processed your submission and sent an email notification to the relevant curator[\\s\\S]*$/', $this->driver->findElement(WebDriverBy::cssSelector("table[class=info]"))->getText()));
}
public function testConfirmVariantToCMTIndividual()
{
// Wait for redirect
$this->waitUntil(WebDriverExpectedCondition::titleContains("Submission of"));
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/submit\\/screening\\/0000000001$/', $this->driver->getCurrentURL()));
$element = $this->driver->findElement(WebDriverBy::xpath("//div/table/tbody/tr/td/table/tbody/tr[2]/td[2]"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*Are you sure you are done with submitting the variants found with this screening[\\s\\S][\\s\\S]*$/', $this->getConfirmation()));
$this->chooseOkOnNextConfirmation();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/submit\\/individual\\/00000001$/', $this->driver->getCurrentURL()));
$element = $this->driver->findElement(WebDriverBy::xpath("//div/table/tbody/tr/td/table/tbody/tr[2]/td[2]/b"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/screenings[\\s\\S]create&target=00000001$/', $this->driver->getCurrentURL()));
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="Screening/Template[]"]/option[text()="RNA (cDNA)"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="Screening/Template[]"]/option[text()="Protein"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="Screening/Technique[]"]/option[text()="Single Base Extension"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="Screening/Technique[]"]/option[text()="Single-Strand DNA Conformation polymorphism Analysis (SSCP)"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="Screening/Technique[]"]/option[text()="SSCA, fluorescent (SSCP)"]'));
$option->click();
// $this->addSelection(WebDriverBy::name("genes[]"), "value=GJB1");
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="genes[]"]/option[@value="GJB1"]'));
$option->click();
$this->check(WebDriverBy::name("variants_found"));
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="owned_by"]/option[text()="LOVD3 Admin (#00001)"]'));
$option->click();
$element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Create screening information entry']"));
$element->click();
$this->assertEquals("Successfully created the screening entry!", $this->driver->findElement(WebDriverBy::cssSelector("table[class=info]"))->getText());
// Wait for redirect
$this->waitUntil(WebDriverExpectedCondition::titleContains("Submission of"));
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/submit\\/screening\\/0000000002$/', $this->driver->getCurrentURL()));
$element = $this->driver->findElement(WebDriverBy::xpath("//div/table/tbody/tr/td/table/tbody/tr/td[2]/b"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/variants[\\s\\S]create&target=0000000002$/', $this->driver->getCurrentURL()));
$element = $this->driver->findElement(WebDriverBy::xpath("//div/table/tbody/tr/td/table/tbody/tr/td[2]/b"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/screenings\\/0000000002[\\s\\S]confirmVariants$/', $this->driver->getCurrentURL()));
$element = $this->driver->findElement(WebDriverBy::id("check_0000000001"));
$element->click();
$this->enterValue(WebDriverBy::xpath("//td/input[@type='password']"), "test1234");
$element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Save variant list']"));
$element->click();
$confirmElementSelector = WebDriverBy::xpath('//td[text()="Successfully confirmed the variant entry!"]');
$this->waitUntil(WebDriverExpectedCondition::presenceOfElementLocated($confirmElementSelector));
}
public function testCreateIndividualDiagnosedWithCMT()
{
$element = $this->driver->findElement(WebDriverBy::id("tab_submit"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/individuals[\\s\\S]create$/', $this->driver->getCurrentURL()));
$this->enterValue(WebDriverBy::name("Individual/Lab_ID"), "12345CMT");
$element = $this->driver->findElement(WebDriverBy::linkText("PubMed"));
$element->click();
$this->enterValue(WebDriverBy::name("Individual/Reference"), "{PMID:Fokkema et al (2011):21520333}");
$this->enterValue(WebDriverBy::name("Individual/Remarks"), "No Remarks");
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="active_diseases[]"]/option[text()="CMT (Charcot Marie Tooth Disease)"]'));
$option->click();
$element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Create individual information entry']"));
$element->click();
$this->assertEquals("Successfully created the individual information entry!", $this->driver->findElement(WebDriverBy::cssSelector("table[class=info]"))->getText());
}
private function captcha()
{
$path = \Yii::getAlias('@runtime/tmp') . '/' . time() . '_' . rand() . '.png';
$this->driver->takeScreenshot($path);
$coordinates = $this->driver->findElement(WebDriverBy::cssSelector('.captchaImage'))->getCoordinates()->onPage();
if (Image::crop($path, $coordinates->getX(), $coordinates->getY(), 300, 60)) {
if (\Yii::$app->get('captcha')->run($path)) {
$this->driver->findElement(WebDriverBy::id('CaptchaInput'))->click();
$this->driver->findElement(WebDriverBy::id('CaptchaInput'))->sendKeys(\Yii::$app->get('captcha')->result());
$this->driver->findElement(WebDriverBy::name('submit_captcha'))->click();
sleep(2);
}
} else {
throw new Exception('Проблема при обрезании картинки');
}
}
public function login()
{
$this->open->open('http://www.gmail.com/');
$this->testCase->assertElementExists('Email');
$this->testCase->assertElementExists('next');
$element = $this->webdriver->byId('Email');
$element->sendKeys($this->accountInformation->getEmailAddress());
$element = $this->webdriver->byId('next');
$element->click();
$this->webdriver->wait()->until(WebDriverExpectedCondition::elementToBeClickable(WebDriverBy::id('Passwd')));
$this->testCase->assertElementExists('Passwd');
$this->testCase->assertElementExists('signIn');
$element = $this->webdriver->byId('Passwd');
$element->sendKeys($this->accountInformation->getPassword());
$element = $this->webdriver->byId('signIn');
$element->click();
$this->webdriver->wait()->until(WebDriverExpectedCondition::titleContains('Inbox'));
}
/**
* Test if recursion is still working
*
* @throws \Facebook\WebDriver\Exception\NoSuchElementException
* @throws \Facebook\WebDriver\Exception\TimeOutException
*/
public function testRecursion()
{
$this->webDriver->get('http://www.google.be');
$this->webDriver->findElement(WebDriverBy::id('lst-ib'))->sendKeys('Recursion')->submit();
$this->webDriver->wait(10, 300)->until(function ($webDriver) {
/** @var WebDriver $webDriver */
try {
$webDriver->findElement(WebDriverBy::cssSelector('a.spell'));
return true;
} catch (NoSuchElementException $ex) {
return false;
}
});
$aSpellElement = $this->webDriver->findElement(WebDriverBy::cssSelector('a.spell'));
$this->assertEquals("Recursion", $aSpellElement->getText());
$aSpellElement->click();
$this->takeScreenshot(__FUNCTION__);
}
public function testPostFinishAddVariantOnlyDescribedOnGenomicLevelToIVAIndividual()
{
$this->driver->get(ROOT_URL . "/src/screenings/IVD");
$element = $this->driver->findElement(WebDriverBy::id("tab_screenings"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/screenings\\/IVD$/', $this->driver->getCurrentURL()));
// $element = $this->driver->findElement(WebDriverBy::cssSelector("#0000000002 > td.ordered"));
$element = $this->driver->findElement(WebDriverBy::xpath("//td[text()='0000000002']"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/screenings\\/0000000002$/', $this->driver->getCurrentURL()));
$element = $this->driver->findElement(WebDriverBy::id("viewentryOptionsButton_Screenings"));
$element->click();
$element = $this->driver->findElement(WebDriverBy::linkText("Add variant to screening"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/variants[\\s\\S]create&target=0000000002$/', $this->driver->getCurrentURL()));
$element = $this->driver->findElement(WebDriverBy::xpath("//table[2]/tbody/tr[2]/td[2]/b"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/variants[\\s\\S]create&reference=Genome&target=0000000002$/', $this->driver->getCurrentURL()));
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="allele"]/option[text()="Paternal (confirmed)"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="chromosome"]/option[text()="15"]'));
$option->click();
$this->enterValue(WebDriverBy::name("VariantOnGenome/DNA"), "g.40702876G>T");
$element = $this->driver->findElement(WebDriverBy::linkText("PubMed"));
$element->click();
// Move mouse to let browser hide tooltip of pubmed link (needed for chrome)
$this->driver->getMouse()->mouseMove(null, 200, 200);
$this->enterValue(WebDriverBy::name("VariantOnGenome/Reference"), "{PMID:Fokkema et al (2011):21520333}");
$this->enterValue(WebDriverBy::name("VariantOnGenome/Frequency"), "11/10000");
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="effect_reported"]/option[text()="Effect unknown"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="effect_concluded"]/option[text()="Effect unknown"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="owned_by"]/option[text()="LOVD3 Admin (#00001)"]'));
$option->click();
$option = $this->driver->findElement(WebDriverBy::xpath('//select[@name="statusid"]/option[text()="Public"]'));
$option->click();
$element = $this->driver->findElement(WebDriverBy::xpath("//input[@value='Create variant entry']"));
$element->click();
$this->assertTrue((bool) preg_match('/^Successfully processed your submission and sent an email notification to the relevant curator[\\s\\S]*$/', $this->driver->findElement(WebDriverBy::cssSelector("table[class=info]"))->getText()));
// wait for page redirect
$this->waitUntil(WebDriverExpectedCondition::titleContains("View genomic variant"));
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/variants\\/0000000333$/', $this->driver->getCurrentURL()));
}
public function testCurateSubmittedData()
{
$element = $this->driver->findElement(WebDriverBy::id("tab_variants"));
$element->click();
// Move mouse to Variants tab and click 'view all genomic variants' option.
$tabElement = $this->driver->findElement(WebDriverBy::id("tab_variants"));
$this->driver->getMouse()->mouseMove($tabElement->getCoordinates());
$allVariantsLink = $this->driver->findElement(WebDriverBy::partialLinkText('View all genomic variants'));
$allVariantsLink->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/variants$/', $this->driver->getCurrentURL()));
$element = $this->driver->findElement(WebDriverBy::linkText("0000000001"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/variants\\/0000000001$/', $this->driver->getCurrentURL()));
$this->assertEquals("Pending", $this->driver->findElement(WebDriverBy::xpath("//tr[13]/td/span"))->getText());
$element = $this->driver->findElement(WebDriverBy::id("viewentryOptionsButton_Variants"));
$element->click();
$element = $this->driver->findElement(WebDriverBy::linkText("Publish (curate) variant entry"));
$element->click();
$this->assertEquals("Public", $this->driver->findElement(WebDriverBy::xpath("//tr[13]/td/span"))->getText());
$element = $this->driver->findElement(WebDriverBy::linkText("00000001"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/individuals\\/00000001$/', $this->driver->getCurrentURL()));
$this->assertEquals("Pending", $this->driver->findElement(WebDriverBy::xpath("//tr[8]/td"))->getText());
$element = $this->driver->findElement(WebDriverBy::id("viewentryOptionsButton_Individuals"));
$element->click();
$element = $this->driver->findElement(WebDriverBy::linkText("Publish (curate) individual entry"));
$element->click();
$this->assertEquals("Public", $this->driver->findElement(WebDriverBy::xpath("//tr[8]/td"))->getText());
// Move mouse to Variants tab and click 'view all genomic variants' option.
$tabElement = $this->driver->findElement(WebDriverBy::id("tab_variants"));
$this->driver->getMouse()->mouseMove($tabElement->getCoordinates());
$allVariantsLink = $this->driver->findElement(WebDriverBy::partialLinkText('View all genomic variants'));
$allVariantsLink->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/variants$/', $this->driver->getCurrentURL()));
$element = $this->driver->findElement(WebDriverBy::linkText("0000000002"));
$element->click();
$this->assertTrue((bool) preg_match('/^[\\s\\S]*\\/src\\/variants\\/0000000002$/', $this->driver->getCurrentURL()));
$this->assertEquals("Pending", $this->driver->findElement(WebDriverBy::xpath("//tr[13]/td/span"))->getText());
$element = $this->driver->findElement(WebDriverBy::id("viewentryOptionsButton_Variants"));
$element->click();
$element = $this->driver->findElement(WebDriverBy::linkText("Publish (curate) variant entry"));
$element->click();
$this->assertEquals("Public", $this->driver->findElement(WebDriverBy::xpath("//tr[13]/td/span"))->getText());
}
/**
* Check if the ultimate answer isn't changed
*
* @throws \Facebook\WebDriver\Exception\NoSuchElementException
* @throws \Facebook\WebDriver\Exception\TimeOutException
*/
public function testUltimateQuestion()
{
$this->webDriver->get('http://www.google.be');
$this->webDriver->findElement(WebDriverBy::id('lst-ib'))->sendKeys('Answer to the Ultimate Question of Life, the Universe, and Everything');
$this->webDriver->wait(10, 300)->until(function ($webDriver) {
/** @var WebDriver $webDriver */
try {
$webDriver->findElement(WebDriverBy::id('cwos'));
return true;
} catch (NoSuchElementException $ex) {
return false;
}
});
$element = $this->webDriver->findElement(WebDriverBy::id('cwos'));
$this->assertEquals('42', $element->getText());
$this->takeScreenshot(__FUNCTION__);
$element = $this->webDriver->findElement(WebDriverBy::id('cwmcwd'));
$this->takeScreenshot(__FUNCTION__ . '-detail', $element);
}
