<?php
include_once '../../config/symbini.php';
include_once $SERVER_ROOT . '/classes/TaxonomyUtilities.php';
if (!$SYMB_UID) {
header('Location: ../../profile/index.php?refurl=../taxa/admin/taxonomymaintenance.php?' . $_SERVER['QUERY_STRING']);
}
$action = array_key_exists("action", $_REQUEST) ? $_REQUEST["action"] : "";
$taxonManager = new TaxonomyUtilities();
$isEditor = false;
if ($isAdmin || array_key_exists("Taxonomy", $userRights)) {
$isEditor = true;
}
if ($isEditor) {
if ($action == 'buildenumtree') {
if ($taxonManager->buildHierarchyEnumTree()) {
$statusStr = 'SUCCESS building Taxonomic Index';
} else {
$statusStr = 'ERROR building Taxonomic Index: ' . $taxonManager->getErrorMessage();
}
} elseif ($action == 'rebuildenumtree') {
if ($taxonManager->rebuildHierarchyEnumTree()) {
$statusStr = 'SUCCESS building Taxonomic Index';
} else {
$statusStr = 'ERROR building Taxonomic Index: ' . $taxonManager->getErrorMessage();
}
}
}
?>
<html>
<head>
public function getDynamicTreePath()
{
$retArr = array();
$tid = '';
$acceptedTid = '';
//Temporary code: check to make sure taxaenumtree is populated
//This code can be removed somewhere down the line
$sqlTest = 'SELECT tid FROM taxaenumtree LIMIT 1';
$rsTest = $this->conn->query($sqlTest);
if (!$rsTest->num_rows) {
echo '<div style="color:red;margin:30px;">';
echo 'NOTICE: Building new taxonomic hierarchy table (taxaenumtree).<br/>';
echo 'This may take a few minutes, but only needs to be done once.<br/>';
echo 'Do not terminate this process early.';
echo '</div>';
ob_flush();
flush();
$taxMainObj = new TaxonomyUtilities();
$taxMainObj->buildHierarchyEnumTree();
}
$rsTest->free();
//Get target taxa (we don't want children and parents of non-accepted taxa, so we'll get those later)
if ($this->targetStr) {
$sql1 = 'SELECT DISTINCT t.tid, ts.tidaccepted ' . 'FROM taxa t LEFT JOIN taxstatus ts ON t.tid = ts.tid ' . 'LEFT JOIN taxstatus ts1 ON t.tid = ts1.tidaccepted ' . 'LEFT JOIN taxa t1 ON ts1.tid = t1.tid ' . 'WHERE (ts.taxauthid = 1 OR ts.taxauthid IS NULL) AND (ts1.taxauthid = 1 OR ts1.taxauthid IS NULL) ';
if (is_numeric($this->targetStr)) {
$sql1 .= 'AND (t.tid IN(' . implode(',', $this->targetStr) . ') OR (ts1.tid = ' . $this->targetStr . '))';
} else {
$sql1 .= 'AND ((t.sciname = "' . $this->targetStr . '") OR (t1.sciname = "' . $this->targetStr . '"))';
}
//echo "<div>".$sql1."</div>";
$rs1 = $this->conn->query($sql1);
while ($row1 = $rs1->fetch_object()) {
if ($rs1->num_rows == 1) {
$tid = $row1->tid;
} elseif ($row1->tid != $row1->tidaccepted) {
$tid = $row1->tid;
$acceptedTid = $row1->tidaccepted;
}
}
$rs1->free();
if ($tid) {
$i = 1;
$prevTid = '';
$retArr[0] = 'root';
$sql2 = 'SELECT t.RankId, te.parenttid, ts.tidaccepted, ts.parenttid AS par2 ' . 'FROM (taxa t LEFT JOIN taxaenumtree te ON t.TID = te.parenttid) ' . 'LEFT JOIN taxstatus ts ON te.parenttid = ts.tid ' . 'WHERE te.TID = ' . ($acceptedTid ? $acceptedTid : $tid) . ' AND te.taxauthid = 1 AND ts.taxauthid = 1 ' . 'ORDER BY t.RankId ';
//echo "<div>".$sql2."</div>";
$rs2 = $this->conn->query($sql2);
while ($row2 = $rs2->fetch_object()) {
if (!$prevTid || $row2->par2 == $prevTid) {
$retArr[$i] = $row2->tidaccepted;
$prevTid = $row2->tidaccepted;
} else {
$sql3 = 'SELECT tid ' . 'FROM taxstatus ' . 'WHERE parenttid = ' . $prevTid . ' AND taxauthid = 1 ' . 'AND tid IN(SELECT parenttid FROM taxaenumtree WHERE tid = ' . $tid . ' AND taxauthid = 1) ';
//echo "<div>".$sql3."</div>";
$rs3 = $this->conn->query($sql3);
while ($row3 = $rs3->fetch_object()) {
$retArr[$i] = $row3->tid;
$prevTid = $row3->tid;
}
$rs3->free();
}
$i++;
}
if ($acceptedTid) {
$retArr[$i] = $acceptedTid;
$i++;
}
$retArr[$i] = $tid;
$rs2->free();
}
}
return $retArr;
}
