Yask, please fill this.
=head1 AUTHORS
Yask Gupta <*****@*****.**> with a review by Steffen ME<ouml>ller
=head1 COPYRIGHT
UK-SH Schleswig-Holstein, LE<uuml>beck, Germany, 2010-2011
=cut
*/
require_once "../func_error.php";
require_once "../header.php";
show_small_header("Modules as Pathways with Cytoscape", true);
if (array_key_exists("modcolour", $_GET) or array_key_exists("modcolour", $_POST)) {
$var = $_POST['modcolour'];
if (empty($var)) {
$var = $_GET['modcolour'];
}
if (empty($var)) {
errorMessage("The argument 'modcolour' needs a value.");
}
$filename = "VisANTInput-" . $var . "_d.out";
if (!file_exists($filename)) {
errorMessage("The file with data for module '{$modcolour}' was not found.");
}
$fh = fopen($filename, "r") or die("Can't open file '{$filename}'.");
$array_edge = array();
$array_node = array();
UK-SH Schleswig-Holstein, LE<uuml>beck, Germany, 2010-2011
=cut
*/
require_once "header.php";
?>
<script>
function showMe (it, box) {
var vis = (box.checked) ? "block" : "none";
document.getElementById(it).style.display = vis;
}
</script>
<?php
require_once "func_connecti.php";
show_small_header("Modules for {$projecttitle}", TRUE);
// retrieva data from previous form execution
$accessible_fields_in_POST_or_GET = array("modcolour", "clinical", "mm", "gs", "LODmin", "order");
if (isset($_POST["debug"]) or isset($_GET["debug"])) {
echo "<br>Retrieving info for: ";
print_r($accessible_fields_in_POST_or_GET);
echo "<br>\n";
}
foreach ($accessible_fields_in_POST_or_GET as $vname) {
if (isset($_POST[$vname])) {
${$vname} = ltrim(rtrim($_POST[$vname]));
if (isset($_POST["debug"]) or isset($_GET["debug"])) {
echo $vname . "=" . ${$vname} . "\t";
}
} elseif (isset($_GET[$vname])) {
${$vname} = ltrim(rtrim($_GET[$vname]));
<?php
require_once "header.php";
show_small_header("Documentation", TRUE);
?>
<h1>Expression QTL for Murine Experimental Autoimmune Encephalomyelits</h1>
<h2>Table of Contents</h2>
<nl>
<li><a href="#locus">Locus
<li><a href="#qtl">QTL
<li><a href="#interaction">Interactions
<li><a href="#expression">Expression data
<ul>
<li><a href="#qtl">Traits
<li><a href="#qtl">Parental data
</ul>
<li><a href="#installation">Installation
</nl>
<h2 name=locus>Locus</h2>
Loci represent regions on the murine chromosome that are associated with
differences between the strains that are associated with the disease.
These are characterised by a microsatellite polymorphic marker in which
the strains differ, which is referred to as a <i>marker</i>.
The web interface allows to query for
<ul>
<li>Chromosome
<li>Morgan-distance from the first marker on that chromosome
</ul>
and other parameters that refer to the <a href=#qtl>QTL</a> and
<a href=#interaction>interaction</a> tables and are explained there.