Yask, please fill this. =head1 AUTHORS Yask Gupta <*****@*****.**> with a review by Steffen ME<ouml>ller =head1 COPYRIGHT UK-SH Schleswig-Holstein, LE<uuml>beck, Germany, 2010-2011 =cut */ require_once "../func_error.php"; require_once "../header.php"; show_small_header("Modules as Pathways with Cytoscape", true); if (array_key_exists("modcolour", $_GET) or array_key_exists("modcolour", $_POST)) { $var = $_POST['modcolour']; if (empty($var)) { $var = $_GET['modcolour']; } if (empty($var)) { errorMessage("The argument 'modcolour' needs a value."); } $filename = "VisANTInput-" . $var . "_d.out"; if (!file_exists($filename)) { errorMessage("The file with data for module '{$modcolour}' was not found."); } $fh = fopen($filename, "r") or die("Can't open file '{$filename}'."); $array_edge = array(); $array_node = array();
UK-SH Schleswig-Holstein, LE<uuml>beck, Germany, 2010-2011 =cut */ require_once "header.php"; ?> <script> function showMe (it, box) { var vis = (box.checked) ? "block" : "none"; document.getElementById(it).style.display = vis; } </script> <?php require_once "func_connecti.php"; show_small_header("Modules for {$projecttitle}", TRUE); // retrieva data from previous form execution $accessible_fields_in_POST_or_GET = array("modcolour", "clinical", "mm", "gs", "LODmin", "order"); if (isset($_POST["debug"]) or isset($_GET["debug"])) { echo "<br>Retrieving info for: "; print_r($accessible_fields_in_POST_or_GET); echo "<br>\n"; } foreach ($accessible_fields_in_POST_or_GET as $vname) { if (isset($_POST[$vname])) { ${$vname} = ltrim(rtrim($_POST[$vname])); if (isset($_POST["debug"]) or isset($_GET["debug"])) { echo $vname . "=" . ${$vname} . "\t"; } } elseif (isset($_GET[$vname])) { ${$vname} = ltrim(rtrim($_GET[$vname]));
<?php require_once "header.php"; show_small_header("Documentation", TRUE); ?> <h1>Expression QTL for Murine Experimental Autoimmune Encephalomyelits</h1> <h2>Table of Contents</h2> <nl> <li><a href="#locus">Locus <li><a href="#qtl">QTL <li><a href="#interaction">Interactions <li><a href="#expression">Expression data <ul> <li><a href="#qtl">Traits <li><a href="#qtl">Parental data </ul> <li><a href="#installation">Installation </nl> <h2 name=locus>Locus</h2> Loci represent regions on the murine chromosome that are associated with differences between the strains that are associated with the disease. These are characterised by a microsatellite polymorphic marker in which the strains differ, which is referred to as a <i>marker</i>. The web interface allows to query for <ul> <li>Chromosome <li>Morgan-distance from the first marker on that chromosome </ul> and other parameters that refer to the <a href=#qtl>QTL</a> and <a href=#interaction>interaction</a> tables and are explained there.