// //} elseif ($_CONF['refseq_build'] == 'hg19') { // } else { // $sURLEnsembl = 'http://www.ensembl.org/Homo_sapiens/Location/View?r=' . $zData['chromosome'] . ':' . ($zData['position_g_mrna_start'] - 50) . '-' . ($zData['position_g_mrna_end'] + 50) . ';contigviewbottom=url:' . $sURLBedFile . rawurlencode('&name=/' . $zData['id'] . ' variants'); // } // $zData['ensembl'] = 'Show variants in the Ensembl Genome Browser (<A href="' . $sURLEnsembl . '=labels" target="_blank">full view</A>, <A href="' . $sURLEnsembl . '=normal" target="_blank">compact view</A>)'; // $zData['ncbi'] = 'Show distribution histogram of variants in the <A href="http://www.ncbi.nlm.nih.gov/projects/sviewer/?id=' . $_SETT['human_builds'][$_CONF['refseq_build']]['ncbi_sequences'][$zData['chromosome']] . '&v=' . ($zData['position_g_mrna_start'] - 100) . ':' . ($zData['position_g_mrna_end'] + 100) . '&content=7&url=' . $sURLBedFile . '" target="_blank">NCBI Sequence Viewer</A>'; } } lovd_showJGNavigation($aNavigation, 'Variants'); print ' <BR><BR>' . "\n\n" . ' <DIV id="viewentryDiv">' . "\n" . ' </DIV>' . "\n\n"; $_GET['search_id_'] = $nID; print ' <BR><BR>' . "\n\n"; $_T->printTitle('Variant on transcripts', 'H4'); require ROOT_PATH . 'class/object_transcript_variants.php'; $_DATA = new LOVD_TranscriptVariant('', $nID); $_DATA->setRowID('VOT_for_VOG_VE', 'VOT_{{transcriptid}}'); $_DATA->setRowLink('VOT_for_VOG_VE', 'javascript:window.location.hash = \'{{transcriptid}}\'; return false'); $_DATA->viewList('VOT_for_VOG_VE', array('id_', 'transcriptid', 'status'), true, true); unset($_GET['search_id_']); ?> <SCRIPT type="text/javascript"> var prevHash = ''; $( function () { lovd_AJAX_viewEntryLoad(); setInterval(lovd_AJAX_viewEntryLoad, 250); });