Ejemplo n.º 1
0
            //                //} elseif ($_CONF['refseq_build'] == 'hg19') {
            //            } else {
            //                $sURLEnsembl = 'http://www.ensembl.org/Homo_sapiens/Location/View?r=' . $zData['chromosome'] . ':' . ($zData['position_g_mrna_start'] - 50) . '-' . ($zData['position_g_mrna_end'] + 50) . ';contigviewbottom=url:' . $sURLBedFile . rawurlencode('&name=/' . $zData['id'] . ' variants');
            //            }
            //            $zData['ensembl'] = 'Show variants in the Ensembl Genome Browser (<A href="' . $sURLEnsembl . '=labels" target="_blank">full view</A>, <A href="' . $sURLEnsembl . '=normal" target="_blank">compact view</A>)';
            //            $zData['ncbi'] = 'Show distribution histogram of variants in the <A href="http://www.ncbi.nlm.nih.gov/projects/sviewer/?id=' . $_SETT['human_builds'][$_CONF['refseq_build']]['ncbi_sequences'][$zData['chromosome']] . '&amp;v=' . ($zData['position_g_mrna_start'] - 100) . ':' . ($zData['position_g_mrna_end'] + 100) . '&amp;content=7&amp;url=' . $sURLBedFile . '" target="_blank">NCBI Sequence Viewer</A>';
        }
    }
    lovd_showJGNavigation($aNavigation, 'Variants');
    print '      <BR><BR>' . "\n\n" . '      <DIV id="viewentryDiv">' . "\n" . '      </DIV>' . "\n\n";
    $_GET['search_id_'] = $nID;
    print '      <BR><BR>' . "\n\n";
    $_T->printTitle('Variant on transcripts', 'H4');
    require ROOT_PATH . 'class/object_transcript_variants.php';
    $_DATA = new LOVD_TranscriptVariant('', $nID);
    $_DATA->setRowID('VOT_for_VOG_VE', 'VOT_{{transcriptid}}');
    $_DATA->setRowLink('VOT_for_VOG_VE', 'javascript:window.location.hash = \'{{transcriptid}}\'; return false');
    $_DATA->viewList('VOT_for_VOG_VE', array('id_', 'transcriptid', 'status'), true, true);
    unset($_GET['search_id_']);
    ?>

      <SCRIPT type="text/javascript">
        var prevHash = '';
        $( function () {
            lovd_AJAX_viewEntryLoad();
            setInterval(lovd_AJAX_viewEntryLoad, 250);
        });