public function actionAdmin()
{
$model = new UploadedFile();
if (isset($_FILES['uploadFileField']) && $_FILES['uploadFileField']['error'] == 0) {
$add = false;
if (isset($_POST['UploadedFile']['addOrReplace']) && $_POST['UploadedFile']['addOrReplace'] == 'add') {
$add = true;
}
$fileId = $this->uploadEchFile($_FILES['uploadFileField']);
if ($fileId != null) {
$file = CommonTools::importFile($this->loadModel($fileId), $add);
} else {
}
}
$datas[] = new SampleProperty("id_sample", "Identification number of the biological material", "Text");
$datas[] = new SampleProperty("id_depositor", "Identification of depositor", "Text");
$datas[] = new SampleProperty("id_familiy", "Identification number of the family", "Text");
$datas[] = new SampleProperty("id_donor", "Identification number of the donor", "Text");
$datas[] = new SampleProperty("consent_ethical", "Consent/Approval by ethical commitee", "Fixed values(Yes, No, Unknown) : Y,N,U");
$datas[] = new SampleProperty("gender", "Gender of donor", "Fixed values(Male, Female, Hermaphrodite, Unknown) : M, F, H, U ");
$datas[] = new SampleProperty("age", "Age of donor", "Integer");
$datas[] = new SampleProperty("pathology", "Pathology of family with OMIM number", "Integer (unique six-digit number)");
$datas[] = new SampleProperty("status_sample", "Status of the biological materiel", "Fixed Values( A=Affected, NA= Non-affected, IS=indication of suspected diagnosis, IT=indication of grade of tumor+value) : ");
$datas[] = new SampleProperty("collect_date", "date of collect of the material", "ISO-standard (8601) time format : 2014-04-18");
$datas[] = new SampleProperty("nature_sample_dna", "nature of the human biological material where dna was extracted from", "fixed values ( affected, non affected)");
$datas[] = new SampleProperty("storage_conditions", "preservation or storage conditions", "fixed values (LN=liquid nitrogen, 80=-80C, RT=room temperature, 4=4°C, 20=-20°C)");
$datas[] = new SampleProperty("quantity", "quantity of biological material", "for dna concentration µg/µl and number of µl");
$datas[] = new SampleProperty("disease_diagnosis", "Disease diagnosis", "Text");
$datas[] = new SampleProperty("origin", "Origin of the biological material", "Organ and tissue");
$datas[] = new SampleProperty("hazard_status", "hazard status", "Text");
$datas[] = new SampleProperty("nature_sample_tissue", "nature of the human biological material", "fixed values ( T=tissue, S=slide,C=cells, P=pellet)");
$datas[] = new SampleProperty("processing_method", "documentation on processing method", "Text");
$datas[] = new SampleProperty("nature_sample_cells", "nature of the cells", "fixed values(epithelia, fibroblast,myphocyt)");
$datas[] = new SampleProperty("culture_condition", "culture condition", "medium and subculture routine");
$datas[] = new SampleProperty("consent", "consent", "Fixed values(Yes, No, Unknown) : Y,N,U");
$datas[] = new SampleProperty("family_tree", "family tree", "Fixed values(Yes, No, Unknown) : Y,N,U");
$datas[] = new SampleProperty("available_relatives_samples", "samples from relatives available", "Fixed values(Yes, No, Unknown) : Y,N,U");
$datas[] = new SampleProperty("supply", "form of supply", "Text");
$datas[] = new SampleProperty("max_delay_delivery", "maximum delay for delivery", "Integer ( hours)");
$datas[] = new SampleProperty("karyotype", "karyotype", "Text");
$datas[] = new SampleProperty("quantity_families", "quantity of families and subjects available for the specific disease", "Integer");
$datas[] = new SampleProperty("detail_treatment", "detail information of treatment/medications", "Text");
$datas[] = new SampleProperty("disease_outcome", "information on disease outcome", "Text");
$datas[] = new SampleProperty("associated_clinical_data", "associated clinical data", "Fixed values(Yes, No, Unknown) : Y,N,U");
$datas[] = new SampleProperty("associated_molecular_data", "associated molecular data ( ref associated clinical data OCDE)", "Fixed values(Yes, No, Unknown) : Y,N,U");
$datas[] = new SampleProperty("associated_imagin_data", "associated imagin data ( ref associated clinical data OCDE)", "Fixed values(Yes, No, Unknown) : Y,N,U");
$datas[] = new SampleProperty("life_style", "information on life style", "Text");
$datas[] = new SampleProperty("family_history", "information on family history", "Text");
$datas[] = new SampleProperty("authentication_method", "dna fingerprinting or another method of authentication", "Text");
$datas[] = new SampleProperty("hazard_status", "hazard status", "Text");
$datas[] = new SampleProperty("details_diagnosis", "details of diagnosis", "Text");
$datas[] = new SampleProperty("related_biological_material", "related biological material", "Fixed Values : DNA Biopsy, tissue,serum, dna");
$datas[] = new SampleProperty("quantity_available", "Quantiy available", "Text");
$datas[] = new SampleProperty("concentration_available", "Concentration available", "Text");
$datas[] = new SampleProperty("samples_characteristics", "characteristics of the sample", "Text (sample composition, content tumour cells)");
$datas[] = new SampleProperty("delay_freezing", "delay of freezing", "Integer(minutes)");
$datas[] = new SampleProperty("cells_characterization", "characterization of cells", "Text (doubling time, tumorigenicity, karyotype etc)");
$datas[] = new SampleProperty("number_of_passage", "number of passage", "Text");
$datas[] = new SampleProperty("morphology_and_growth_characteristics", "morphology and growth characteristics", "Text");
$datas[] = new SampleProperty("reference_paper", "reference paper", "Text");
$datas[] = new SampleProperty("biobank_id", "biobank id", "Text : Use BRIF Code to store this variable");
$datas[] = new SampleProperty("biobank_name", "biobank name", "Text");
$datas[] = new SampleProperty("biobank_date_entry", "Date of Entry", " ISO-standard (8601) time format when data about the biobank was reported into a database. : 2014-04-18T06:28:42Z");
$datas[] = new SampleProperty("biobank_collection_id", "Sample Collection/Study ID*", "Text : Textual string depicting the unique ID or acronym for the sample collection or study");
$datas[] = new SampleProperty("biobank_collection_name", "Collection/Study name*", "Text : Textual string of letters denoting the name of the study in English");
$datas[] = new SampleProperty("patient_birth_date", "birth date patient", "Date format ISO 8601 : YYYY-MM-DD exemple 2014-04-18");
$datas[] = new SampleProperty("tumor_diagnosis", "tumor_diagnosis", "Text : CIM 10 format");
$dataProviderProperties = new CArrayDataProvider($datas, array('keyField' => false, 'pagination' => false));
$model->addOrReplace = 'add';
$this->render('admin', array('model' => $model, 'dataProviderProperties' => $dataProviderProperties));
}
