/**
* get biobank infos and convert into an LDIF format
* @return string
*/
private function getBiobanksLDIF()
{
$result = "\ndn: c=fr,ou=biobanks,dc=directory,dc=bbmri-eric,dc=eu\nobjectClass: country\nobjectClass: top\nc: fr\n\n";
//FIXME Mandatory empty line here ( TODO use ldif exporter to check syntax)
$biobanks = Biobank::model()->findAll();
foreach ($biobanks as $biobank) {
$attributes = array();
$attributes['biobankCountry'] = "FR";
$attributes['biobankID'] = "bbmri-eric:ID:FR_" . $biobank->identifier;
$attributes['biobankName'] = $biobank->name;
$attributes['biobankJuridicalPerson'] = $biobank->name;
//TODO flase in cappital
$attributes['biobankMaterialStoredDNA'] = "FALSE";
$attributes['biobankMaterialStoredRNA'] = "FALSE";
// $attributes['biobankMaterialStoredcDNAmRNA'] = "FALSE";
// $attributes['biobankMaterialStoredmicroRNA'] = "FALSE";
// $attributes['biobankMaterialStoredWholeBlood'] = "FALSE";
// $attributes['biobankMaterialStoredPBC'] = "FALSE";
$attributes['biobankMaterialStoredBlood'] = "FALSE";
$attributes['biobankMaterialStoredPlasma'] = "FALSE";
$attributes['biobankMaterialStoredSerum'] = "FALSE";
// $attributes['biobankMaterialStoredTissueCryo'] = "FALSE";
$attributes['biobankMaterialStoredTissueFrozen'] = "FALSE";
// $attributes['biobankMaterialStoredTissueParaffin'] = "FALSE";
$attributes['biobankMaterialStoredTissueFFPE'] = "FALSE";
// $attributes['biobankMaterialStoredCellLines'] = "FALSE";
$attributes['biobankMaterialStoredImmortalizedCellLines'] = "FALSE";
$attributes['biobankMaterialStoredUrine'] = "FALSE";
$attributes['biobankMaterialStoredSaliva'] = "FALSE";
$attributes['biobankMaterialStoredFaeces'] = "FALSE";
// $attributes['biobankMaterialStoredPathogen'] = "FALSE";
$attributes['biobankMaterialStoredIsolatedPathogen'] = "FALSE";
$attributes['biobankMaterialStoredOther'] = "FALSE";
//TODO each biobank need to sign a chart between bbmri and the biobank (TODO to discuss)
$attributes['biobankPartnerCharterSigned'] = "FALSE";
//nmber of samples 10^n n=number
$attributes['biobankSize'] = "1";
$attributes['objectClass'] = "biobankClinical";
//TODO implementer la valeur de ce champ Si biobankClinical Diagnosis obligatoire
$attributes['diagnosisAvailable'] = "urn:miriam:icd:D*";
$contact = $biobank->getContact();
$attributes['biobankContactCountry'] = "FR";
//TODO get pays avec FR pas integer $contact->pays;
//TODO info de contact obligatoire lever un warning si pas affectée pour l export
if ($contact != null) {
$attributes['biobankContactFirstName'] = $contact->first_name;
$attributes['biobankContactLastName'] = $contact->last_name;
$attributes['biobankContactPhone'] = CommonTools::getIntPhone($contact->phone);
$attributes['biobankContactAddress'] = $contact->adresse;
$attributes['biobankContactZIP'] = $contact->code_postal;
$attributes['biobankContactCity'] = $contact->ville;
//TODO contact email need to be filled
if (isset($contact->email)) {
$attributes['biobankContactEmail'] = $contact->email;
} else {
$attributes['biobankContactEmail'] = $contact->email;
}
} else {
$attributes['biobankContactEmail'] = "N/A";
Yii::log("contact must be filled for export LDIF. Biobank without contact:" . $biobank->name, CLogger::LEVEL_WARNING, "application");
}
$this->checkAttributesComplianceWithBBMRI($attributes);
$result .= "dn: biobankID=" . trim($attributes['biobankID']) . ",c=fr,ou=biobanks,dc=directory,dc=bbmri-eric,dc=eu\n";
//TODO recuperer le diagnistique agréger
foreach ($attributes as $key => $value) {
if (isset($value)) {
//$result.=$key . ":: " . base64_encode(trim($value)) . "\n";
$result .= $key . ":: " . trim($value) . "\n";
}
}
//FIXME mandatory empty line
$result .= "objectClass: biobank\n\n";
}
return $result;
}
