/** * Internal function to return an ArticleGalley object from a row. * @param $row array * @return ArticleGalley */ function &_returnGalleyFromRow(&$row) { if ($row['html_galley']) { $galley = new ArticleHTMLGalley(); // HTML-specific settings $galley->setStyleFileId($row['style_file_id']); if ($row['style_file_id']) { $galley->setStyleFile($this->articleFileDao->getArticleFile($row['style_file_id'])); } // Retrieve images $images =& $this->getGalleyImages($row['galley_id']); $galley->setImageFiles($images); } else { $galley = new ArticleGalley(); } $galley->setId($row['galley_id']); $galley->setArticleId($row['article_id']); $galley->setLocale($row['locale']); $galley->setFileId($row['file_id']); $galley->setLabel($row['label']); $galley->setFileStage($row['file_stage']); $galley->setSequence($row['seq']); $galley->setRemoteURL($row['remote_url']); // ArticleFile set methods $galley->setFileName($row['file_name']); $galley->setOriginalFileName($row['original_file_name']); $galley->setFileType($row['file_type']); $galley->setFileSize($row['file_size']); $galley->setDateModified($this->datetimeFromDB($row['date_modified'])); $galley->setDateUploaded($this->datetimeFromDB($row['date_uploaded'])); $this->getDataObjectSettings('article_galley_settings', 'galley_id', $row['galley_id'], $galley); HookRegistry::call('ArticleGalleyDAO::_returnGalleyFromRow', array(&$galley, &$row)); return $galley; }
/** * Mock and register a ArticleGalleyDAO as a test * back end for the SolrWebService class. */ private function _registerMockArticleGalleyDAO() { // Mock an ArticleGalleyDAO. $galleyDao = $this->getMock('ArticleGalleyDAO', array('getGalleysByArticle'), array(), '', false); // Mock a list of supplementary files. $galley1 = new ArticleGalley(); $galley1->setId(4); $galley1->setLocale('de_DE'); $galley1->setFileType('application/pdf'); $galley1->setFileName('galley1.pdf'); $galley2 = new ArticleGalley(); $galley2->setId(5); $galley2->setLocale('en_US'); $galley2->setFileType('text/html'); $galley2->setFileName('galley2.html'); $galleys = array($galley1, $galley2); // Mock the getGalleysByArticle() method. $galleyDao->expects($this->any())->method('getGalleysByArticle')->will($this->returnValue($galleys)); // Register the mock DAO. DAORegistry::registerDAO('ArticleGalleyDAO', $galleyDao); }
/** * Save settings. */ function execute() { $articleDao =& DAORegistry::getDAO('ArticleDAO'); $signoffDao =& DAORegistry::getDAO('SignoffDAO'); $sectionEditorSubmissionDao =& DAORegistry::getDAO('SectionEditorSubmissionDAO'); $application =& PKPApplication::getApplication(); $request =& $application->getRequest(); $user =& $request->getUser(); $router =& $request->getRouter(); $journal =& $router->getContext($request); $article = new Article(); $article->setLocale($journal->getPrimaryLocale()); // FIXME in bug #5543 $article->setUserId($user->getId()); $article->setJournalId($journal->getId()); $article->setSectionId($this->getData('sectionId')); $article->setLanguage(String::substr($journal->getPrimaryLocale(), 0, 2)); $article->setTitle($this->getData('title'), null); // Localized //add Original Journal to Abstract $orig_journal = $this->getData('originalJournal'); foreach (array_keys($orig_journal) as $locale) { if (empty($orig_journal[$locale])) { $orig_journal[$locale] = 'unpublished'; } } $abstr = $this->getData('abstract'); foreach (array_keys($abstr) as $abs_key) { $abstr[$abs_key] .= ' <p id="originalPub"> ' . $orig_journal[$abs_key] . ' </p> '; $this->setData('abstract', $abstr); } $article->setAbstract($this->getData('abstract'), null); // Localized $article->setDiscipline($this->getData('discipline'), null); // Localized $article->setSubjectClass($this->getData('subjectClass'), null); // Localized $article->setSubject($this->getData('subject'), null); // Localized $article->setCoverageGeo($this->getData('coverageGeo'), null); // Localized $article->setCoverageChron($this->getData('coverageChron'), null); // Localized $article->setCoverageSample($this->getData('coverageSample'), null); // Localized $article->setType($this->getData('type'), null); // Localized $article->setSponsor($this->getData('sponsor'), null); // Localized $article->setCitations($this->getData('citations')); $article->setPages($this->getData('pages')); // Set some default values so the ArticleDAO doesn't complain when adding this article $article->setDateSubmitted(Core::getCurrentDate()); $article->setStatus(STATUS_PUBLISHED); $article->setSubmissionProgress(0); $article->stampStatusModified(); $article->setCurrentRound(1); $article->setFastTracked(1); $article->setHideAuthor(0); $article->setCommentsStatus(0); // Insert the article to get it's ID $articleDao->insertArticle($article); $articleId = $article->getId(); // Add authors $authors = $this->getData('authors'); for ($i = 0, $count = count($authors); $i < $count; $i++) { if ($authors[$i]['authorId'] > 0) { // Update an existing author $author =& $article->getAuthor($authors[$i]['authorId']); $isExistingAuthor = true; } else { // Create a new author $author = new Author(); $isExistingAuthor = false; } if ($author != null) { $author->setSubmissionId($articleId); $author->setFirstName($authors[$i]['firstName']); $author->setMiddleName($authors[$i]['middleName']); $author->setLastName($authors[$i]['lastName']); if (array_key_exists('affiliation', $authors[$i])) { $author->setAffiliation($authors[$i]['affiliation'], null); } $author->setCountry($authors[$i]['country']); $author->setEmail($authors[$i]['email']); $author->setUrl($authors[$i]['url']); if (array_key_exists('competingInterests', $authors[$i])) { $author->setCompetingInterests($authors[$i]['competingInterests'], null); } $author->setBiography($authors[$i]['biography'], null); $author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0); $author->setSequence($authors[$i]['seq']); if ($isExistingAuthor == false) { $article->addAuthor($author); } } } // Check whether the user gave a handle and create a handleSubmissionFile in case $submissionHandle = $this->getData('submissionHandle'); $handleSubmissionFileId; $handleCheck = FALSE; //import FileManager before creating Files because otherwise naming of the copied files failes import('classes.file.ArticleFileManager'); foreach (array_keys($submissionHandle) as $locale) { if (!empty($submissionHandle[$locale])) { $handleCheck = TRUE; $handleSubmissionId = $this->createHandleTXTFile($submissionHandle[$locale], $articleId, 'submission'); $handleSubmissionPDFId = $this->createHandlePDF($submissionHandle[$locale], $articleId, 'submission'); //Add the handle submission files as galley import('classes.article.ArticleGalley'); $galley = new ArticleGalley(); $galley->setArticleId($articleId); $galley->setFileId($handleSubmissionPDFId); $galley->setLocale($locale); //$galley->setFileType('pdf'); $galley->setFileType('application/pdf'); $galley->setLabel('PDF'); $galleyDao =& DAORegistry::getDAO('ArticleGalleyDAO'); $galleyDao->insertGalley($galley); } if ($handleCheck == TRUE) { if ($locale == $journal->getPrimaryLocale()) { $article->setSubmissionFileId($handleSubmissionPDFId); $article->SetReviewFileId($handleSubmissionPDFId); } // Update file search index import('classes.search.ArticleSearchIndex'); if (isset($galley)) { ArticleSearchIndex::updateFileIndex($galley->getArticleId(), ARTICLE_SEARCH_GALLEY_FILE, $galley->getFileId()); } } } // Add the submission files as galleys import('classes.file.TemporaryFileManager'); import('classes.file.ArticleFileManager'); $tempFileIds = $this->getData('tempFileId'); $temporaryFileManager = new TemporaryFileManager(); $articleFileManager = new ArticleFileManager($articleId); $tempFileCheck = FALSE; foreach (array_keys($tempFileIds) as $locale) { $temporaryFile = $temporaryFileManager->getFile($tempFileIds[$locale], $user->getId()); $fileId = null; if ($temporaryFile) { $tempFileCheck = TRUE; $fileId = $articleFileManager->temporaryFileToArticleFile($temporaryFile, ARTICLE_FILE_SUBMISSION); $fileType = $temporaryFile->getFileType(); if (strstr($fileType, 'html')) { import('classes.article.ArticleHTMLGalley'); $galley = new ArticleHTMLGalley(); } else { import('classes.article.ArticleGalley'); $galley = new ArticleGalley(); } $galley->setArticleId($articleId); $galley->setFileId($fileId); $galley->setLocale($locale); if ($galley->isHTMLGalley()) { $galley->setLabel('HTML'); } else { if (strstr($fileType, 'pdf')) { $galley->setLabel('PDF'); } else { if (strstr($fileType, 'postscript')) { $galley->setLabel('Postscript'); } else { if (strstr($fileType, 'xml')) { $galley->setLabel('XML'); } else { $galley->setLabel(__('common.untitled')); } } } } $galleyDao =& DAORegistry::getDAO('ArticleGalleyDAO'); $galleyDao->insertGalley($galley); } if ($tempFileCheck == TRUE) { if ($locale == $journal->getPrimaryLocale()) { $article->setSubmissionFileId($fileId); $article->SetReviewFileId($fileId); } // Update file search index import('classes.search.ArticleSearchIndex'); if (isset($galley)) { ArticleSearchIndex::updateFileIndex($galley->getArticleId(), ARTICLE_SEARCH_GALLEY_FILE, $galley->getFileId()); } } } //Check whether the user gave a handle and create handleSupplFile in case $supplHandle = $this->getData('supplHandle'); $handleSuppFileId = null; foreach (array_keys($supplHandle) as $locale) { if (!empty($supplHandle[$locale])) { $handleSuppFileId = $this->createHandleTXTFile($supplHandle[$locale], $articleId, 'supplementary'); $handleSupplPDFFileID = $this->createHandlePDF($submissionHandle[$locale], $articleId, 'supplementary'); } } //Add uploaded Supplementary file $tempSupplFileIds = $this->getData('tempSupplFileId'); foreach (array_keys($tempSupplFileIds) as $locale) { $temporaryFile = $temporaryFileManager->getFile($tempSupplFileIds[$locale], $user->getId()); $fileId = null; if ($temporaryFile) { $fileId = $articleFileManager->temporaryFileToArticleFile($temporaryFile, ARTICLE_FILE_SUPP); $fileType = $temporaryFile->getFileType(); } } // Designate this as the review version by default. $authorSubmissionDao =& DAORegistry::getDAO('AuthorSubmissionDAO'); $authorSubmission =& $authorSubmissionDao->getAuthorSubmission($articleId); import('classes.submission.author.AuthorAction'); AuthorAction::designateReviewVersion($authorSubmission, true); // Accept the submission $sectionEditorSubmission =& $sectionEditorSubmissionDao->getSectionEditorSubmission($articleId); $articleFileManager = new ArticleFileManager($articleId); $sectionEditorSubmission->setReviewFile($articleFileManager->getFile($article->getSubmissionFileId())); import('classes.submission.sectionEditor.SectionEditorAction'); SectionEditorAction::recordDecision($sectionEditorSubmission, SUBMISSION_EDITOR_DECISION_ACCEPT); // Create signoff infrastructure $copyeditInitialSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_INITIAL', ASSOC_TYPE_ARTICLE, $articleId); $copyeditAuthorSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_AUTHOR', ASSOC_TYPE_ARTICLE, $articleId); $copyeditFinalSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_FINAL', ASSOC_TYPE_ARTICLE, $articleId); $copyeditInitialSignoff->setUserId(0); $copyeditAuthorSignoff->setUserId($user->getId()); $copyeditFinalSignoff->setUserId(0); $signoffDao->updateObject($copyeditInitialSignoff); $signoffDao->updateObject($copyeditAuthorSignoff); $signoffDao->updateObject($copyeditFinalSignoff); $layoutSignoff = $signoffDao->build('SIGNOFF_LAYOUT', ASSOC_TYPE_ARTICLE, $articleId); $layoutSignoff->setUserId(0); $signoffDao->updateObject($layoutSignoff); $proofAuthorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_AUTHOR', ASSOC_TYPE_ARTICLE, $articleId); $proofProofreaderSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_PROOFREADER', ASSOC_TYPE_ARTICLE, $articleId); $proofLayoutEditorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_LAYOUT', ASSOC_TYPE_ARTICLE, $articleId); $proofAuthorSignoff->setUserId($user->getId()); $proofProofreaderSignoff->setUserId(0); $proofLayoutEditorSignoff->setUserId(0); $signoffDao->updateObject($proofAuthorSignoff); $signoffDao->updateObject($proofProofreaderSignoff); $signoffDao->updateObject($proofLayoutEditorSignoff); import('classes.author.form.submit.AuthorSubmitForm'); AuthorSubmitForm::assignEditors($article); $articleDao->updateArticle($article); // Add to end of editing queue import('classes.submission.editor.EditorAction'); if (isset($galley)) { EditorAction::expediteSubmission($article); } // Add to the current issue $issueDao =& DAORegistry::getDAO('IssueDAO'); $issue =& $issueDao->getCurrentIssue($journal->getId()); $issueId = $issue->getIssueId(); //if ($this->getData('destination') == "issue") { // Add to an existing issue // $issueId = $this->getData('issueId'); $this->scheduleForPublication($articleId, $issueId); //} // Index article. import('classes.search.ArticleSearchIndex'); ArticleSearchIndex::indexArticleMetadata($article); // Import the references list. $citationDao =& DAORegistry::getDAO('CitationDAO'); $rawCitationList = $article->getCitations(); $citationDao->importCitations($request, ASSOC_TYPE_ARTICLE, $articleId, $rawCitationList); }
/** * @covers OAIMetadataFormat_DC * @covers Dc11SchemaArticleAdapter */ public function testToXml() { // // Create test data. // // Author import('classes.article.Author'); $author = new Author(); $author->setFirstName('author-firstname'); $author->setLastName('author-lastname'); $author->setAffiliation('author-affiliation', 'en_US'); // Supplementary file import('classes.article.SuppFile'); $suppFile = new SuppFile(); $suppFile->setFileId(999); // Article import('classes.article.PublishedArticle'); $article = $this->getMock('PublishedArticle', array('getBestArticleId')); /* @var $article PublishedArticle */ $article->expects($this->any())->method('getBestArticleId')->will($this->returnValue(9)); $article->setId(9); $article->addAuthor($author); $article->setSuppFiles(array($suppFile)); $article->setPages(15); $article->setType('art-type', 'en_US'); $article->setTitle('article-title-en', 'en_US'); $article->setTitle('article-title-de', 'de_DE'); $article->setDiscipline('article-discipline', 'en_US'); $article->setSubject('article-subject', 'en_US'); $article->setSubjectClass('article-subject-class', 'en_US'); $article->setAbstract('article-abstract', 'en_US'); $article->setSponsor('article-sponsor', 'en_US'); $article->setStoredDOI('article-doi'); $article->setLanguage('en_US'); $article->setCoverageGeo('article-coverage-geo', 'en_US'); $article->setCoverageChron('article-coverage-chron', 'en_US'); $article->setCoverageSample('article-coverage-sample', 'en_US'); // Galleys import('classes.article.ArticleGalley'); $galley = new ArticleGalley(); $galley->setFileType('galley-filetype'); $galleys = array($galley); // Journal import('classes.journal.Journal'); $journal = $this->getMock('Journal', array('getSetting')); /* @var $journal Journal */ $journal->expects($this->any())->method('getSetting')->will($this->returnCallback(array($this, 'getJournalSetting'))); $journal->setPrimaryLocale('en_US'); $journal->setPath('journal-path'); // Section import('classes.journal.Section'); $section = new Section(); $section->setIdentifyType('section-identify-type', 'en_US'); // Issue import('classes.issue.Issue'); $issue = $this->getMock('Issue', array('getIssueIdentification')); /* @var $issue Issue */ $issue->expects($this->any())->method('getIssueIdentification')->will($this->returnValue('issue-identification')); $issue->setDatePublished('2010-11-05'); // // Create infrastructural support objects // // Router import('lib.pkp.classes.core.PKPRouter'); $router = $this->getMock('PKPRouter', array('url')); $application = PKPApplication::getApplication(); $router->setApplication($application); $router->expects($this->any())->method('url')->will($this->returnValue('router-url')); // Request import('classes.core.Request'); $request = $this->getMock('Request', array('getRouter')); $request->expects($this->any())->method('getRouter')->will($this->returnValue($router)); Registry::set('request', $request); // // Create mock DAOs // // Create a mocked OAIDAO that returns our test data. import('classes.oai.ojs.OAIDAO'); $oaiDao = $this->getMock('OAIDAO', array('getJournal', 'getSection', 'getIssue')); $oaiDao->expects($this->any())->method('getJournal')->will($this->returnValue($journal)); $oaiDao->expects($this->any())->method('getSection')->will($this->returnValue($section)); $oaiDao->expects($this->any())->method('getIssue')->will($this->returnValue($issue)); DAORegistry::registerDAO('OAIDAO', $oaiDao); // Create a mocked ArticleGalleyDAO that returns our test data. import('classes.article.ArticleGalleyDAO'); $articleGalleyDao = $this->getMock('OAIDAO', array('getGalleysByArticle')); $articleGalleyDao->expects($this->any())->method('getGalleysByArticle')->will($this->returnValue($galleys)); DAORegistry::registerDAO('ArticleGalleyDAO', $articleGalleyDao); // // Test // // OAI record $record = new OAIRecord(); $record->setData('article', $article); $record->setData('galleys', $galleys); $record->setData('journal', $journal); $record->setData('section', $section); $record->setData('issue', $issue); // Instantiate the OAI meta-data format. $prefix = OAIMetadataFormatPlugin_DC::getMetadataPrefix(); $schema = OAIMetadataFormatPlugin_DC::getSchema(); $namespace = OAIMetadataFormatPlugin_DC::getNamespace(); $mdFormat = new OAIMetadataFormat_DC($prefix, $schema, $namespace); $xml = $mdFormat->toXml($record); self::assertXmlStringEqualsXmlFile('tests/plugins/oaiMetadataFormats/dc/expectedResult.xml', $xml); }
/** * Internal function to return an ArticleGalley object from a row. * @param $row array * @return ArticleGalley */ function &_returnGalleyFromRow(&$row) { if ($row['html_galley']) { $galley = new ArticleHTMLGalley(); // HTML-specific settings $galley->setStyleFileId($row['style_file_id']); if ($row['style_file_id']) { $galley->setStyleFile($this->articleFileDao->getArticleFile($row['style_file_id'])); } // Retrieve images $images =& $this->getGalleyImages($row['galley_id']); $galley->setImageFiles($images); } else { $galley = new ArticleGalley(); } $galley->setId($row['galley_id']); $galley->setPublicGalleyId($row['public_galley_id']); $galley->setArticleId($row['article_id']); $galley->setLocale($row['locale']); $galley->setFileId($row['file_id']); $galley->setLabel($row['label']); $galley->setType($row['type']); $galley->setSequence($row['seq']); $galley->setViews($row['views']); // ArticleFile set methods $galley->setFileName($row['file_name']); $galley->setOriginalFileName($row['original_file_name']); $galley->setFileType($row['file_type']); $galley->setFileSize($row['file_size']); $galley->setDateModified($this->datetimeFromDB($row['date_modified'])); $galley->setDateUploaded($this->datetimeFromDB($row['date_uploaded'])); //%LP% Fedora set methods (ArticleFile) $galley->setFedoraPid($row['fedora_pid']); $galley->setFedoraNamespace($row['fedora_namespace']); $galley->setFedoraDsid($row['fedora_dsid']); HookRegistry::call('ArticleGalleyDAO::_returnGalleyFromRow', array(&$galley, &$row)); return $galley; }