/**
* Internal function to return an ArticleGalley object from a row.
* @param $row array
* @return ArticleGalley
*/
function &_returnGalleyFromRow(&$row)
{
if ($row['html_galley']) {
$galley = new ArticleHTMLGalley();
// HTML-specific settings
$galley->setStyleFileId($row['style_file_id']);
if ($row['style_file_id']) {
$galley->setStyleFile($this->articleFileDao->getArticleFile($row['style_file_id']));
}
// Retrieve images
$images =& $this->getGalleyImages($row['galley_id']);
$galley->setImageFiles($images);
} else {
$galley = new ArticleGalley();
}
$galley->setId($row['galley_id']);
$galley->setArticleId($row['article_id']);
$galley->setLocale($row['locale']);
$galley->setFileId($row['file_id']);
$galley->setLabel($row['label']);
$galley->setFileStage($row['file_stage']);
$galley->setSequence($row['seq']);
$galley->setRemoteURL($row['remote_url']);
// ArticleFile set methods
$galley->setFileName($row['file_name']);
$galley->setOriginalFileName($row['original_file_name']);
$galley->setFileType($row['file_type']);
$galley->setFileSize($row['file_size']);
$galley->setDateModified($this->datetimeFromDB($row['date_modified']));
$galley->setDateUploaded($this->datetimeFromDB($row['date_uploaded']));
$this->getDataObjectSettings('article_galley_settings', 'galley_id', $row['galley_id'], $galley);
HookRegistry::call('ArticleGalleyDAO::_returnGalleyFromRow', array(&$galley, &$row));
return $galley;
}
/**
* Mock and register a ArticleGalleyDAO as a test
* back end for the SolrWebService class.
*/
private function _registerMockArticleGalleyDAO()
{
// Mock an ArticleGalleyDAO.
$galleyDao = $this->getMock('ArticleGalleyDAO', array('getGalleysByArticle'), array(), '', false);
// Mock a list of supplementary files.
$galley1 = new ArticleGalley();
$galley1->setId(4);
$galley1->setLocale('de_DE');
$galley1->setFileType('application/pdf');
$galley1->setFileName('galley1.pdf');
$galley2 = new ArticleGalley();
$galley2->setId(5);
$galley2->setLocale('en_US');
$galley2->setFileType('text/html');
$galley2->setFileName('galley2.html');
$galleys = array($galley1, $galley2);
// Mock the getGalleysByArticle() method.
$galleyDao->expects($this->any())->method('getGalleysByArticle')->will($this->returnValue($galleys));
// Register the mock DAO.
DAORegistry::registerDAO('ArticleGalleyDAO', $galleyDao);
}
/**
* Save settings.
*/
function execute()
{
$articleDao =& DAORegistry::getDAO('ArticleDAO');
$signoffDao =& DAORegistry::getDAO('SignoffDAO');
$sectionEditorSubmissionDao =& DAORegistry::getDAO('SectionEditorSubmissionDAO');
$application =& PKPApplication::getApplication();
$request =& $application->getRequest();
$user =& $request->getUser();
$router =& $request->getRouter();
$journal =& $router->getContext($request);
$article = new Article();
$article->setLocale($journal->getPrimaryLocale());
// FIXME in bug #5543
$article->setUserId($user->getId());
$article->setJournalId($journal->getId());
$article->setSectionId($this->getData('sectionId'));
$article->setLanguage(String::substr($journal->getPrimaryLocale(), 0, 2));
$article->setTitle($this->getData('title'), null);
// Localized
//add Original Journal to Abstract
$orig_journal = $this->getData('originalJournal');
foreach (array_keys($orig_journal) as $locale) {
if (empty($orig_journal[$locale])) {
$orig_journal[$locale] = 'unpublished';
}
}
$abstr = $this->getData('abstract');
foreach (array_keys($abstr) as $abs_key) {
$abstr[$abs_key] .= ' <p id="originalPub"> ' . $orig_journal[$abs_key] . ' </p> ';
$this->setData('abstract', $abstr);
}
$article->setAbstract($this->getData('abstract'), null);
// Localized
$article->setDiscipline($this->getData('discipline'), null);
// Localized
$article->setSubjectClass($this->getData('subjectClass'), null);
// Localized
$article->setSubject($this->getData('subject'), null);
// Localized
$article->setCoverageGeo($this->getData('coverageGeo'), null);
// Localized
$article->setCoverageChron($this->getData('coverageChron'), null);
// Localized
$article->setCoverageSample($this->getData('coverageSample'), null);
// Localized
$article->setType($this->getData('type'), null);
// Localized
$article->setSponsor($this->getData('sponsor'), null);
// Localized
$article->setCitations($this->getData('citations'));
$article->setPages($this->getData('pages'));
// Set some default values so the ArticleDAO doesn't complain when adding this article
$article->setDateSubmitted(Core::getCurrentDate());
$article->setStatus(STATUS_PUBLISHED);
$article->setSubmissionProgress(0);
$article->stampStatusModified();
$article->setCurrentRound(1);
$article->setFastTracked(1);
$article->setHideAuthor(0);
$article->setCommentsStatus(0);
// Insert the article to get it's ID
$articleDao->insertArticle($article);
$articleId = $article->getId();
// Add authors
$authors = $this->getData('authors');
for ($i = 0, $count = count($authors); $i < $count; $i++) {
if ($authors[$i]['authorId'] > 0) {
// Update an existing author
$author =& $article->getAuthor($authors[$i]['authorId']);
$isExistingAuthor = true;
} else {
// Create a new author
$author = new Author();
$isExistingAuthor = false;
}
if ($author != null) {
$author->setSubmissionId($articleId);
$author->setFirstName($authors[$i]['firstName']);
$author->setMiddleName($authors[$i]['middleName']);
$author->setLastName($authors[$i]['lastName']);
if (array_key_exists('affiliation', $authors[$i])) {
$author->setAffiliation($authors[$i]['affiliation'], null);
}
$author->setCountry($authors[$i]['country']);
$author->setEmail($authors[$i]['email']);
$author->setUrl($authors[$i]['url']);
if (array_key_exists('competingInterests', $authors[$i])) {
$author->setCompetingInterests($authors[$i]['competingInterests'], null);
}
$author->setBiography($authors[$i]['biography'], null);
$author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0);
$author->setSequence($authors[$i]['seq']);
if ($isExistingAuthor == false) {
$article->addAuthor($author);
}
}
}
// Check whether the user gave a handle and create a handleSubmissionFile in case
$submissionHandle = $this->getData('submissionHandle');
$handleSubmissionFileId;
$handleCheck = FALSE;
//import FileManager before creating Files because otherwise naming of the copied files failes
import('classes.file.ArticleFileManager');
foreach (array_keys($submissionHandle) as $locale) {
if (!empty($submissionHandle[$locale])) {
$handleCheck = TRUE;
$handleSubmissionId = $this->createHandleTXTFile($submissionHandle[$locale], $articleId, 'submission');
$handleSubmissionPDFId = $this->createHandlePDF($submissionHandle[$locale], $articleId, 'submission');
//Add the handle submission files as galley
import('classes.article.ArticleGalley');
$galley = new ArticleGalley();
$galley->setArticleId($articleId);
$galley->setFileId($handleSubmissionPDFId);
$galley->setLocale($locale);
//$galley->setFileType('pdf');
$galley->setFileType('application/pdf');
$galley->setLabel('PDF');
$galleyDao =& DAORegistry::getDAO('ArticleGalleyDAO');
$galleyDao->insertGalley($galley);
}
if ($handleCheck == TRUE) {
if ($locale == $journal->getPrimaryLocale()) {
$article->setSubmissionFileId($handleSubmissionPDFId);
$article->SetReviewFileId($handleSubmissionPDFId);
}
// Update file search index
import('classes.search.ArticleSearchIndex');
if (isset($galley)) {
ArticleSearchIndex::updateFileIndex($galley->getArticleId(), ARTICLE_SEARCH_GALLEY_FILE, $galley->getFileId());
}
}
}
// Add the submission files as galleys
import('classes.file.TemporaryFileManager');
import('classes.file.ArticleFileManager');
$tempFileIds = $this->getData('tempFileId');
$temporaryFileManager = new TemporaryFileManager();
$articleFileManager = new ArticleFileManager($articleId);
$tempFileCheck = FALSE;
foreach (array_keys($tempFileIds) as $locale) {
$temporaryFile = $temporaryFileManager->getFile($tempFileIds[$locale], $user->getId());
$fileId = null;
if ($temporaryFile) {
$tempFileCheck = TRUE;
$fileId = $articleFileManager->temporaryFileToArticleFile($temporaryFile, ARTICLE_FILE_SUBMISSION);
$fileType = $temporaryFile->getFileType();
if (strstr($fileType, 'html')) {
import('classes.article.ArticleHTMLGalley');
$galley = new ArticleHTMLGalley();
} else {
import('classes.article.ArticleGalley');
$galley = new ArticleGalley();
}
$galley->setArticleId($articleId);
$galley->setFileId($fileId);
$galley->setLocale($locale);
if ($galley->isHTMLGalley()) {
$galley->setLabel('HTML');
} else {
if (strstr($fileType, 'pdf')) {
$galley->setLabel('PDF');
} else {
if (strstr($fileType, 'postscript')) {
$galley->setLabel('Postscript');
} else {
if (strstr($fileType, 'xml')) {
$galley->setLabel('XML');
} else {
$galley->setLabel(__('common.untitled'));
}
}
}
}
$galleyDao =& DAORegistry::getDAO('ArticleGalleyDAO');
$galleyDao->insertGalley($galley);
}
if ($tempFileCheck == TRUE) {
if ($locale == $journal->getPrimaryLocale()) {
$article->setSubmissionFileId($fileId);
$article->SetReviewFileId($fileId);
}
// Update file search index
import('classes.search.ArticleSearchIndex');
if (isset($galley)) {
ArticleSearchIndex::updateFileIndex($galley->getArticleId(), ARTICLE_SEARCH_GALLEY_FILE, $galley->getFileId());
}
}
}
//Check whether the user gave a handle and create handleSupplFile in case
$supplHandle = $this->getData('supplHandle');
$handleSuppFileId = null;
foreach (array_keys($supplHandle) as $locale) {
if (!empty($supplHandle[$locale])) {
$handleSuppFileId = $this->createHandleTXTFile($supplHandle[$locale], $articleId, 'supplementary');
$handleSupplPDFFileID = $this->createHandlePDF($submissionHandle[$locale], $articleId, 'supplementary');
}
}
//Add uploaded Supplementary file
$tempSupplFileIds = $this->getData('tempSupplFileId');
foreach (array_keys($tempSupplFileIds) as $locale) {
$temporaryFile = $temporaryFileManager->getFile($tempSupplFileIds[$locale], $user->getId());
$fileId = null;
if ($temporaryFile) {
$fileId = $articleFileManager->temporaryFileToArticleFile($temporaryFile, ARTICLE_FILE_SUPP);
$fileType = $temporaryFile->getFileType();
}
}
// Designate this as the review version by default.
$authorSubmissionDao =& DAORegistry::getDAO('AuthorSubmissionDAO');
$authorSubmission =& $authorSubmissionDao->getAuthorSubmission($articleId);
import('classes.submission.author.AuthorAction');
AuthorAction::designateReviewVersion($authorSubmission, true);
// Accept the submission
$sectionEditorSubmission =& $sectionEditorSubmissionDao->getSectionEditorSubmission($articleId);
$articleFileManager = new ArticleFileManager($articleId);
$sectionEditorSubmission->setReviewFile($articleFileManager->getFile($article->getSubmissionFileId()));
import('classes.submission.sectionEditor.SectionEditorAction');
SectionEditorAction::recordDecision($sectionEditorSubmission, SUBMISSION_EDITOR_DECISION_ACCEPT);
// Create signoff infrastructure
$copyeditInitialSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_INITIAL', ASSOC_TYPE_ARTICLE, $articleId);
$copyeditAuthorSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_AUTHOR', ASSOC_TYPE_ARTICLE, $articleId);
$copyeditFinalSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_FINAL', ASSOC_TYPE_ARTICLE, $articleId);
$copyeditInitialSignoff->setUserId(0);
$copyeditAuthorSignoff->setUserId($user->getId());
$copyeditFinalSignoff->setUserId(0);
$signoffDao->updateObject($copyeditInitialSignoff);
$signoffDao->updateObject($copyeditAuthorSignoff);
$signoffDao->updateObject($copyeditFinalSignoff);
$layoutSignoff = $signoffDao->build('SIGNOFF_LAYOUT', ASSOC_TYPE_ARTICLE, $articleId);
$layoutSignoff->setUserId(0);
$signoffDao->updateObject($layoutSignoff);
$proofAuthorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_AUTHOR', ASSOC_TYPE_ARTICLE, $articleId);
$proofProofreaderSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_PROOFREADER', ASSOC_TYPE_ARTICLE, $articleId);
$proofLayoutEditorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_LAYOUT', ASSOC_TYPE_ARTICLE, $articleId);
$proofAuthorSignoff->setUserId($user->getId());
$proofProofreaderSignoff->setUserId(0);
$proofLayoutEditorSignoff->setUserId(0);
$signoffDao->updateObject($proofAuthorSignoff);
$signoffDao->updateObject($proofProofreaderSignoff);
$signoffDao->updateObject($proofLayoutEditorSignoff);
import('classes.author.form.submit.AuthorSubmitForm');
AuthorSubmitForm::assignEditors($article);
$articleDao->updateArticle($article);
// Add to end of editing queue
import('classes.submission.editor.EditorAction');
if (isset($galley)) {
EditorAction::expediteSubmission($article);
}
// Add to the current issue
$issueDao =& DAORegistry::getDAO('IssueDAO');
$issue =& $issueDao->getCurrentIssue($journal->getId());
$issueId = $issue->getIssueId();
//if ($this->getData('destination') == "issue") {
// Add to an existing issue
// $issueId = $this->getData('issueId');
$this->scheduleForPublication($articleId, $issueId);
//}
// Index article.
import('classes.search.ArticleSearchIndex');
ArticleSearchIndex::indexArticleMetadata($article);
// Import the references list.
$citationDao =& DAORegistry::getDAO('CitationDAO');
$rawCitationList = $article->getCitations();
$citationDao->importCitations($request, ASSOC_TYPE_ARTICLE, $articleId, $rawCitationList);
}
/**
* @covers OAIMetadataFormat_DC
* @covers Dc11SchemaArticleAdapter
*/
public function testToXml()
{
//
// Create test data.
//
// Author
import('classes.article.Author');
$author = new Author();
$author->setFirstName('author-firstname');
$author->setLastName('author-lastname');
$author->setAffiliation('author-affiliation', 'en_US');
// Supplementary file
import('classes.article.SuppFile');
$suppFile = new SuppFile();
$suppFile->setFileId(999);
// Article
import('classes.article.PublishedArticle');
$article = $this->getMock('PublishedArticle', array('getBestArticleId'));
/* @var $article PublishedArticle */
$article->expects($this->any())->method('getBestArticleId')->will($this->returnValue(9));
$article->setId(9);
$article->addAuthor($author);
$article->setSuppFiles(array($suppFile));
$article->setPages(15);
$article->setType('art-type', 'en_US');
$article->setTitle('article-title-en', 'en_US');
$article->setTitle('article-title-de', 'de_DE');
$article->setDiscipline('article-discipline', 'en_US');
$article->setSubject('article-subject', 'en_US');
$article->setSubjectClass('article-subject-class', 'en_US');
$article->setAbstract('article-abstract', 'en_US');
$article->setSponsor('article-sponsor', 'en_US');
$article->setStoredDOI('article-doi');
$article->setLanguage('en_US');
$article->setCoverageGeo('article-coverage-geo', 'en_US');
$article->setCoverageChron('article-coverage-chron', 'en_US');
$article->setCoverageSample('article-coverage-sample', 'en_US');
// Galleys
import('classes.article.ArticleGalley');
$galley = new ArticleGalley();
$galley->setFileType('galley-filetype');
$galleys = array($galley);
// Journal
import('classes.journal.Journal');
$journal = $this->getMock('Journal', array('getSetting'));
/* @var $journal Journal */
$journal->expects($this->any())->method('getSetting')->will($this->returnCallback(array($this, 'getJournalSetting')));
$journal->setPrimaryLocale('en_US');
$journal->setPath('journal-path');
// Section
import('classes.journal.Section');
$section = new Section();
$section->setIdentifyType('section-identify-type', 'en_US');
// Issue
import('classes.issue.Issue');
$issue = $this->getMock('Issue', array('getIssueIdentification'));
/* @var $issue Issue */
$issue->expects($this->any())->method('getIssueIdentification')->will($this->returnValue('issue-identification'));
$issue->setDatePublished('2010-11-05');
//
// Create infrastructural support objects
//
// Router
import('lib.pkp.classes.core.PKPRouter');
$router = $this->getMock('PKPRouter', array('url'));
$application = PKPApplication::getApplication();
$router->setApplication($application);
$router->expects($this->any())->method('url')->will($this->returnValue('router-url'));
// Request
import('classes.core.Request');
$request = $this->getMock('Request', array('getRouter'));
$request->expects($this->any())->method('getRouter')->will($this->returnValue($router));
Registry::set('request', $request);
//
// Create mock DAOs
//
// Create a mocked OAIDAO that returns our test data.
import('classes.oai.ojs.OAIDAO');
$oaiDao = $this->getMock('OAIDAO', array('getJournal', 'getSection', 'getIssue'));
$oaiDao->expects($this->any())->method('getJournal')->will($this->returnValue($journal));
$oaiDao->expects($this->any())->method('getSection')->will($this->returnValue($section));
$oaiDao->expects($this->any())->method('getIssue')->will($this->returnValue($issue));
DAORegistry::registerDAO('OAIDAO', $oaiDao);
// Create a mocked ArticleGalleyDAO that returns our test data.
import('classes.article.ArticleGalleyDAO');
$articleGalleyDao = $this->getMock('OAIDAO', array('getGalleysByArticle'));
$articleGalleyDao->expects($this->any())->method('getGalleysByArticle')->will($this->returnValue($galleys));
DAORegistry::registerDAO('ArticleGalleyDAO', $articleGalleyDao);
//
// Test
//
// OAI record
$record = new OAIRecord();
$record->setData('article', $article);
$record->setData('galleys', $galleys);
$record->setData('journal', $journal);
$record->setData('section', $section);
$record->setData('issue', $issue);
// Instantiate the OAI meta-data format.
$prefix = OAIMetadataFormatPlugin_DC::getMetadataPrefix();
$schema = OAIMetadataFormatPlugin_DC::getSchema();
$namespace = OAIMetadataFormatPlugin_DC::getNamespace();
$mdFormat = new OAIMetadataFormat_DC($prefix, $schema, $namespace);
$xml = $mdFormat->toXml($record);
self::assertXmlStringEqualsXmlFile('tests/plugins/oaiMetadataFormats/dc/expectedResult.xml', $xml);
}
/**
* Internal function to return an ArticleGalley object from a row.
* @param $row array
* @return ArticleGalley
*/
function &_returnGalleyFromRow(&$row)
{
if ($row['html_galley']) {
$galley = new ArticleHTMLGalley();
// HTML-specific settings
$galley->setStyleFileId($row['style_file_id']);
if ($row['style_file_id']) {
$galley->setStyleFile($this->articleFileDao->getArticleFile($row['style_file_id']));
}
// Retrieve images
$images =& $this->getGalleyImages($row['galley_id']);
$galley->setImageFiles($images);
} else {
$galley = new ArticleGalley();
}
$galley->setId($row['galley_id']);
$galley->setPublicGalleyId($row['public_galley_id']);
$galley->setArticleId($row['article_id']);
$galley->setLocale($row['locale']);
$galley->setFileId($row['file_id']);
$galley->setLabel($row['label']);
$galley->setType($row['type']);
$galley->setSequence($row['seq']);
$galley->setViews($row['views']);
// ArticleFile set methods
$galley->setFileName($row['file_name']);
$galley->setOriginalFileName($row['original_file_name']);
$galley->setFileType($row['file_type']);
$galley->setFileSize($row['file_size']);
$galley->setDateModified($this->datetimeFromDB($row['date_modified']));
$galley->setDateUploaded($this->datetimeFromDB($row['date_uploaded']));
//%LP% Fedora set methods (ArticleFile)
$galley->setFedoraPid($row['fedora_pid']);
$galley->setFedoraNamespace($row['fedora_namespace']);
$galley->setFedoraDsid($row['fedora_dsid']);
HookRegistry::call('ArticleGalleyDAO::_returnGalleyFromRow', array(&$galley, &$row));
return $galley;
}
