function handleArticleNode(&$journal, &$articleNode, &$issue, &$section, &$article, &$publishedArticle, &$errors, &$user, $isCommandLine, &$dependentItems) { $errors = array(); $journalSupportedLocales = array_keys($journal->getSupportedLocaleNames()); // => journal locales must be set up before $journalPrimaryLocale = $journal->getPrimaryLocale(); $publishedArticleDao =& DAORegistry::getDAO('PublishedArticleDAO'); $articleDao =& DAORegistry::getDAO('ArticleDAO'); $article = new Article(); $article->setLocale($journalPrimaryLocale); // FIXME in bug #5543 $article->setJournalId($journal->getId()); $article->setUserId($user->getId()); $article->setSectionId($section->getId()); $article->setStatus(STATUS_PUBLISHED); $article->setSubmissionProgress(0); $article->setDateSubmitted(Core::getCurrentDate()); $article->stampStatusModified(); $titleExists = false; for ($index = 0; $node = $articleNode->getChildByName('title', $index); $index++) { $locale = $node->getAttribute('locale'); if ($locale == '') { $locale = $journalPrimaryLocale; } elseif (!in_array($locale, $journalSupportedLocales)) { $errors[] = array('plugins.importexport.native.import.error.articleTitleLocaleUnsupported', array('articleTitle' => $node->getValue(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale)); return false; } $article->setTitle($node->getValue(), $locale); $titleExists = true; } if (!$titleExists || $article->getTitle($journalPrimaryLocale) == "") { $errors[] = array('plugins.importexport.native.import.error.articleTitleMissing', array('issueTitle' => $issue->getIssueIdentification(), 'sectionTitle' => $section->getLocalizedTitle())); return false; } for ($index = 0; $node = $articleNode->getChildByName('abstract', $index); $index++) { $locale = $node->getAttribute('locale'); if ($locale == '') { $locale = $journalPrimaryLocale; } elseif (!in_array($locale, $journalSupportedLocales)) { $errors[] = array('plugins.importexport.native.import.error.articleAbstractLocaleUnsupported', array('articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale)); return false; } $article->setAbstract($node->getValue(), $locale); } if ($indexingNode = $articleNode->getChildByName('indexing')) { for ($index = 0; $node = $indexingNode->getChildByName('discipline', $index); $index++) { $locale = $node->getAttribute('locale'); if ($locale == '') { $locale = $journalPrimaryLocale; } elseif (!in_array($locale, $journalSupportedLocales)) { $errors[] = array('plugins.importexport.native.import.error.articleDisciplineLocaleUnsupported', array('articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale)); return false; } $article->setDiscipline($node->getValue(), $locale); } for ($index = 0; $node = $indexingNode->getChildByName('type', $index); $index++) { $locale = $node->getAttribute('locale'); if ($locale == '') { $locale = $journalPrimaryLocale; } elseif (!in_array($locale, $journalSupportedLocales)) { $errors[] = array('plugins.importexport.native.import.error.articleTypeLocaleUnsupported', array('articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale)); return false; } $article->setType($node->getValue(), $locale); } for ($index = 0; $node = $indexingNode->getChildByName('subject', $index); $index++) { $locale = $node->getAttribute('locale'); if ($locale == '') { $locale = $journalPrimaryLocale; } elseif (!in_array($locale, $journalSupportedLocales)) { $errors[] = array('plugins.importexport.native.import.error.articleSubjectLocaleUnsupported', array('articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale)); return false; } $article->setSubject($node->getValue(), $locale); } for ($index = 0; $node = $indexingNode->getChildByName('subject_class', $index); $index++) { $locale = $node->getAttribute('locale'); if ($locale == '') { $locale = $journalPrimaryLocale; } elseif (!in_array($locale, $journalSupportedLocales)) { $errors[] = array('plugins.importexport.native.import.error.articleSubjectClassLocaleUnsupported', array('articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale)); return false; } $article->setSubjectClass($node->getValue(), $locale); } if ($coverageNode = $indexingNode->getChildByName('coverage')) { for ($index = 0; $node = $coverageNode->getChildByName('geographical', $index); $index++) { $locale = $node->getAttribute('locale'); if ($locale == '') { $locale = $journalPrimaryLocale; } elseif (!in_array($locale, $journalSupportedLocales)) { $errors[] = array('plugins.importexport.native.import.error.articleCoverageGeoLocaleUnsupported', array('articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale)); return false; } $article->setCoverageGeo($node->getValue(), $locale); } for ($index = 0; $node = $coverageNode->getChildByName('chronological', $index); $index++) { $locale = $node->getAttribute('locale'); if ($locale == '') { $locale = $journalPrimaryLocale; } elseif (!in_array($locale, $journalSupportedLocales)) { $errors[] = array('plugins.importexport.native.import.error.articleCoverageChronLocaleUnsupported', array('articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale)); return false; } $article->setCoverageChron($node->getValue(), $locale); } for ($index = 0; $node = $coverageNode->getChildByName('sample', $index); $index++) { $locale = $node->getAttribute('locale'); if ($locale == '') { $locale = $journalPrimaryLocale; } elseif (!in_array($locale, $journalSupportedLocales)) { $errors[] = array('plugins.importexport.native.import.error.articleCoverageSampleLocaleUnsupported', array('articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale)); return false; } $article->setCoverageSample($node->getValue(), $locale); } } } for ($index = 0; $node = $articleNode->getChildByName('sponsor', $index); $index++) { $locale = $node->getAttribute('locale'); if ($locale == '') { $locale = $journalPrimaryLocale; } elseif (!in_array($locale, $journalSupportedLocales)) { $errors[] = array('plugins.importexport.native.import.error.articleSponsorLocaleUnsupported', array('articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale)); return false; } $article->setSponsor($node->getValue(), $locale); } if ($node = $articleNode->getChildByName('pages')) { $article->setPages($node->getValue()); } if ($language = $articleNode->getAttribute('language')) { $article->setLanguage($language); } /* --- Handle authors --- */ $hasErrors = false; for ($index = 0; $node = $articleNode->getChildByName('author', $index); $index++) { if (!NativeImportDom::handleAuthorNode($journal, $node, $issue, $section, $article, $authorErrors)) { $errors = array_merge($errors, $authorErrors); $hasErrors = true; } } if ($hasErrors) { return false; } /* --- Handle covers --- */ for ($index = 0; $node = $articleNode->getChildByName('cover', $index); $index++) { if (!NativeImportDom::handleArticleCoverNode($journal, $node, $article, $coverErrors, $isCommandLine)) { $errors = array_merge($errors, $coverErrors); $hasErrors = true; } } for ($index = 0; $node = $articleNode->getChildByName('id', $index); $index++) { switch ($node->getAttribute('type')) { case 'doi': $article->setStoredDOI($node->getValue()); break; } } $articleDao->insertArticle($article); $dependentItems[] = array('article', $article); // Create submission mangement records $signoffDao =& DAORegistry::getDAO('SignoffDAO'); $initialCopyeditSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_INITIAL', ASSOC_TYPE_ARTICLE, $article->getId()); $initialCopyeditSignoff->setUserId(0); $signoffDao->updateObject($initialCopyeditSignoff); $authorCopyeditSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_AUTHOR', ASSOC_TYPE_ARTICLE, $article->getId()); $authorCopyeditSignoff->setUserId(0); $signoffDao->updateObject($authorCopyeditSignoff); $finalCopyeditSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_FINAL', ASSOC_TYPE_ARTICLE, $article->getId()); $finalCopyeditSignoff->setUserId(0); $signoffDao->updateObject($finalCopyeditSignoff); $layoutSignoff = $signoffDao->build('SIGNOFF_LAYOUT', ASSOC_TYPE_ARTICLE, $article->getId()); $layoutSignoff->setUserId(0); $signoffDao->updateObject($layoutSignoff); $authorProofSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_AUTHOR', ASSOC_TYPE_ARTICLE, $article->getId()); $authorProofSignoff->setUserId(0); $signoffDao->updateObject($authorProofSignoff); $proofreaderProofSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_PROOFREADER', ASSOC_TYPE_ARTICLE, $article->getId()); $proofreaderProofSignoff->setUserId(0); $signoffDao->updateObject($proofreaderProofSignoff); $layoutProofSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_LAYOUT', ASSOC_TYPE_ARTICLE, $article->getId()); $layoutProofSignoff->setUserId(0); $signoffDao->updateObject($layoutProofSignoff); // Log the import in the article event log. import('classes.article.log.ArticleLog'); import('classes.article.log.ArticleEventLogEntry'); ArticleLog::logEvent($article->getId(), ARTICLE_LOG_ARTICLE_IMPORT, ARTICLE_LOG_TYPE_DEFAULT, 0, 'log.imported', array('userName' => $user->getFullName(), 'articleId' => $article->getId())); // Insert published article entry. $publishedArticle = new PublishedArticle(); $publishedArticle->setArticleId($article->getId()); $publishedArticle->setIssueId($issue->getId()); if ($node = $articleNode->getChildByName('date_published')) { $publishedDate = strtotime($node->getValue()); if ($publishedDate === -1) { $errors[] = array('plugins.importexport.native.import.error.invalidDate', array('value' => $node->getValue())); return false; } else { $publishedArticle->setDatePublished($publishedDate); } } $node = $articleNode->getChildByName('open_access'); $publishedArticle->setAccessStatus($node ? ARTICLE_ACCESS_OPEN : ARTICLE_ACCESS_ISSUE_DEFAULT); $publishedArticle->setSeq(REALLY_BIG_NUMBER); $publishedArticle->setViews(0); $publishedArticle->setPublicArticleId($articleNode->getAttribute('public_id')); $publishedArticle->setPubId($publishedArticleDao->insertPublishedArticle($publishedArticle)); $publishedArticleDao->resequencePublishedArticles($section->getId(), $issue->getId()); /* --- Galleys (html or otherwise handled simultaneously) --- */ import('classes.file.ArticleFileManager'); $articleFileManager = new ArticleFileManager($article->getId()); /* --- Handle galleys --- */ $hasErrors = false; $galleyCount = 0; for ($index = 0; $index < count($articleNode->children); $index++) { $node = $articleNode->children[$index]; if ($node->getName() == 'htmlgalley') { $isHtml = true; } elseif ($node->getName() == 'galley') { $isHtml = false; } else { continue; } if (!NativeImportDom::handleGalleyNode($journal, $node, $issue, $section, $article, $galleyErrors, $isCommandLine, $isHtml, $galleyCount, $articleFileManager)) { $errors = array_merge($errors, $galleyErrors); $hasErrors = true; } $galleyCount++; unset($node); } if ($hasErrors) { return false; } /* --- Handle supplemental files --- */ $hasErrors = false; for ($index = 0; $node = $articleNode->getChildByName('supplemental_file', $index); $index++) { if (!NativeImportDom::handleSuppFileNode($journal, $node, $issue, $section, $article, $suppFileErrors, $isCommandLine, $articleFileManager)) { $errors = array_merge($errors, $suppFileErrors); $hasErrors = true; } } if ($hasErrors) { return false; } // Index the inserted article. import('classes.search.ArticleSearchIndex'); ArticleSearchIndex::indexArticleMetadata($article); ArticleSearchIndex::indexArticleFiles($article); return true; }
/** * Update cataloguing information for an existing study. * @param Article $article * @param DataverseStudy $study * @return DataverseStudy */ function &updateStudy(&$article, &$study) { $journal =& Request::getJournal(); $packager = new DataversePackager(); // Add article metadata $packager->addMetadata('title', $article->getLocalizedTitle()); $packager->addMetadata('description', $article->getLocalizedAbstract()); foreach ($article->getAuthors() as $author) { $packager->addMetadata('creator', $author->getFullName(true)); } // subject: academic disciplines $split = '/\\s*' . DATAVERSE_PLUGIN_SUBJECT_SEPARATOR . '\\s*/'; foreach (preg_split($split, $article->getLocalizedDiscipline(), NULL, PREG_SPLIT_NO_EMPTY) as $subject) { $packager->addMetadata('subject', $subject); } // subject: subject classifications foreach (preg_split($split, $article->getLocalizedSubjectClass(), NULL, PREG_SPLIT_NO_EMPTY) as $subject) { $packager->addMetadata('subject', $subject); } // subject: keywords foreach (preg_split($split, $article->getLocalizedSubject(), NULL, PREG_SPLIT_NO_EMPTY) as $subject) { $packager->addMetadata('subject', $subject); } // geographic coverage foreach (preg_split($split, $article->getLocalizedCoverageGeo(), NULL, PREG_SPLIT_NO_EMPTY) as $coverage) { $packager->addMetadata('coverage', $coverage); } // rights $packager->addMetadata('rights', $journal->getLocalizedSetting('copyrightNotice')); // publisher $packager->addMetadata('publisher', $journal->getSetting('publisherInstitution')); // metadata for published articles: public IDs, publication dates $pubIdAttributes = array(); if ($article->getStatus() == STATUS_PUBLISHED) { // publication date $publishedArticleDao = DAORegistry::getDAO('PublishedArticleDAO'); $publishedArticle =& $publishedArticleDao->getPublishedArticleByArticleId($article->getId(), $article->getJournalId()); $datePublished = $publishedArticle->getDatePublished(); if (!$datePublished) { // If article has no pub date, use issue pub date $issueDao =& DAORegistry::getDAO('IssueDAO'); $issue =& $issueDao->getIssueByArticleId($article->getId(), $article->getJournalId()); $datePublished = $issue->getDatePublished(); } $packager->addMetadata('date', strftime('%Y-%m-%d', strtotime($datePublished))); // isReferencedBy: If article is published, add a persistent URL to citation using specified pubid plugin $pubIdPlugin =& PluginRegistry::getPlugin('pubIds', $this->getSetting($article->getJournalId(), 'pubIdPlugin')); if ($pubIdPlugin && $pubIdPlugin->getEnabled()) { $pubIdAttributes['agency'] = $pubIdPlugin->getDisplayName(); $pubIdAttributes['IDNo'] = $article->getPubId($pubIdPlugin->getPubIdType()); $pubIdAttributes['holdingsURI'] = $pubIdPlugin->getResolvingUrl($article->getJournalId(), $pubIdAttributes['IDNo']); } else { // If no pub id plugin selected, use OJS URL $pubIdAttributes['holdingsURI'] = Request::url($journal->getPath(), 'article', 'view', array($article->getId())); } } // isReferencedBy $packager->addMetadata('isReferencedBy', $this->getCitation($article), $pubIdAttributes); // Include (some) suppfile metadata in study $suppFileDao =& DAORegistry::getDAO('SuppFileDAO'); $dataverseFileDao =& DAORegistry::getDAO('DataverseFileDAO'); $dvFiles =& $dataverseFileDao->getDataverseFilesByStudyId($study->getId()); foreach ($dvFiles as $dvFile) { $suppFile =& $suppFileDao->getSuppFile($dvFile->getSuppFileId(), $article->getId()); if (isset($suppFile)) { // subject foreach (preg_split($split, $suppFile->getSuppFileSubject(), NULL, PREG_SPLIT_NO_EMPTY) as $subject) { $packager->addMetadata('subject', $subject); } // Type of file if ($suppFile->getType()) { $packager->addMetadata('type', $suppFile->getType()); } // Type of file, user-defined: if ($suppFile->getSuppFileTypeOther()) { $packager->addMetadata('type', $suppFile->getSuppFileTypeOther()); } } } // Write atom entry to file $packager->createAtomEntry(); // Update the study in Dataverse $client = $this->_initSwordClient(); $depositReceipt = $client->replaceMetadata($study->getEditUri(), $this->getSetting($article->getJournalId(), 'username'), $this->getSetting($article->getJournalId(), 'password'), '', $packager->getAtomEntryFilePath()); if ($depositReceipt->sac_status != DATAVERSE_PLUGIN_HTTP_STATUS_OK) { return false; } // Updating the metadata may have updated the data citation $study->setDataCitation($depositReceipt->sac_dcterms['bibliographicCitation'][0]); $dataverseStudyDao =& DAORegistry::getDAO('DataverseStudyDAO'); $dataverseStudyDao->updateStudy($study); return $study; }