/**
* @param int $uploadId
* @param Package $package
*/
public function addUploadToPackage($uploadId, Package $package)
{
$statementName = __METHOD__;
$this->dbManager->prepare($statementName, "INSERT INTO upload_packages (package_fk, upload_fk) VALUES(\$1, \$2)");
$res = $this->dbManager->execute($statementName, array($package->getId(), $uploadId));
$this->dbManager->freeResult($res);
}
/**
* @param int $parentFolder parent folder_pk
* @return string HTML of the folder tree
*/
public function showFolderTree($parentFolder)
{
$uri = Traceback_uri();
$sql = $this->folderDao->getFolderTreeCte($parentFolder) . " SELECT folder_pk, folder_name, folder_desc, depth, name_path FROM folder_tree ORDER BY name_path";
$stmt = __METHOD__;
$this->dbManager->prepare($stmt, $sql);
$res = $this->dbManager->execute($stmt, array($parentFolder));
$out = '';
$lastDepth = -1;
while ($row = $this->dbManager->fetchArray($res)) {
for (; $row['depth'] < $lastDepth; $lastDepth--) {
$out .= '</li></ul>';
}
if ($row['depth'] == $lastDepth) {
$out .= "</li>\n<li>";
}
if ($row['depth'] == 0) {
$out .= '<ul id="tree"><li>';
$lastDepth++;
}
for (; $row['depth'] > $lastDepth; $lastDepth++) {
$out .= '<ul><li>';
}
$out .= $this->getFormattedItem($row, $uri);
}
for (; -1 < $lastDepth; $lastDepth--) {
$out .= '</li></ul>';
}
return $out;
}
/**
* @param array $uploadTreeArray
* @throws \Exception
*/
protected function prepareUploadTree($uploadTreeArray = array())
{
$this->dbManager->prepare($stmt = 'insert.uploadtree', "INSERT INTO uploadtree (uploadtree_pk, parent, upload_fk, pfile_fk, ufile_mode, lft, rgt, ufile_name, realparent) VALUES (\$1, \$2, \$3, \$4, \$5, \$6, \$7, \$8, \$9)");
foreach ($uploadTreeArray as $uploadTreeEntry) {
$this->dbManager->freeResult($this->dbManager->execute($stmt, $uploadTreeEntry));
}
}
public function rerunBulkAndDeciderOnUpload($uploadId, $groupId, $userId, $jobId)
{
$bulkIds = $this->getBulkIds($uploadId, $groupId, $userId);
if (count($bulkIds) == 0) {
return 0;
}
/* @var $uploadDao UploadDao */
$uploadDao = $GLOBALS['container']->get('dao.upload');
$topItem = $uploadDao->getUploadParent($uploadId);
/* @var $deciderPlugin DeciderJobAgentPlugin */
$deciderPlugin = plugin_find("agent_deciderjob");
$dependecies = array();
$sql = "INSERT INTO license_ref_bulk (user_fk,group_fk,rf_text,upload_fk,uploadtree_fk) " . "SELECT \$1 AS user_fk, \$2 AS group_fk,rf_text,\$3 AS upload_fk, \$4 as uploadtree_fk\n FROM license_ref_bulk WHERE lrb_pk=\$5 RETURNING lrb_pk, \$5 as lrb_origin";
$sqlLic = "INSERT INTO license_set_bulk (lrb_fk,rf_fk,removing) " . "SELECT \$1 as lrb_fk,rf_fk,removing FROM license_set_bulk WHERE lrb_fk=\$2";
$this->dbManager->prepare($stmt = __METHOD__ . 'cloneBulk', $sql);
$this->dbManager->prepare($stmtLic = __METHOD__ . 'cloneBulkLic', $sqlLic);
foreach ($bulkIds as $bulkId) {
$res = $this->dbManager->execute($stmt, array($userId, $groupId, $uploadId, $topItem, $bulkId));
$row = $this->dbManager->fetchArray($res);
$this->dbManager->freeResult($res);
$resLic = $this->dbManager->execute($stmtLic, array($row['lrb_pk'], $row['lrb_origin']));
$this->dbManager->freeResult($resLic);
$dependecies[] = array('name' => 'agent_monk_bulk', 'args' => $row['lrb_pk'], AgentPlugin::PRE_JOB_QUEUE => array('agent_decider'));
}
$errorMsg = '';
$jqId = $deciderPlugin->AgentAdd($jobId, $uploadId, $errorMsg, $dependecies);
if (!empty($errorMsg)) {
throw new Exception($errorMsg);
}
return $jqId;
}
public function hasActionPermissionsOnJob($jobId, $userId, $groupId)
{
$result = array();
$stmt = __METHOD__;
$this->dbManager->prepare($stmt, "SELECT *\n FROM job\n LEFT JOIN group_user_member gm\n ON gm.user_fk = job_user_fk\n WHERE job_pk = \$1\n AND (job_user_fk = \$2\n OR gm.group_fk = \$3)");
$res = $this->dbManager->execute($stmt, array($jobId, $userId, $groupId));
while ($row = $this->dbManager->fetchArray($res)) {
$result[$row['jq_pk']] = $row['end_bits'];
}
$this->dbManager->freeResult($res);
return $result;
}
public function getAllJobStatus($uploadId, $userId, $groupId)
{
$result = array();
$stmt = __METHOD__;
$this->dbManager->prepare($stmt, "SELECT jobqueue.jq_pk as jq_pk, jobqueue.jq_end_bits as end_bits\n FROM jobqueue INNER JOIN job ON jobqueue.jq_job_fk = job.job_pk\n LEFT JOIN group_user_member gm ON gm.user_fk = job_user_fk\n WHERE job.job_upload_fk = \$1 AND (job_user_fk = \$2 OR gm.group_fk = \$3)");
$res = $this->dbManager->execute($stmt, array($uploadId, $userId, $groupId));
while ($row = $this->dbManager->fetchArray($res)) {
$result[$row['jq_pk']] = $row['end_bits'];
}
$this->dbManager->freeResult($res);
return $result;
}
protected function setUp()
{
$this->testDb = new TestPgDb();
$this->dbManager =& $this->testDb->getDbManager();
$this->testDb->createPlainTables(array('upload', 'uploadtree'));
$this->dbManager->prepare($stmt = 'insert.upload', "INSERT INTO upload (upload_pk, uploadtree_tablename) VALUES (\$1, \$2)");
$uploadArray = array(array(1, 'uploadtree'), array(2, 'uploadtree_a'));
foreach ($uploadArray as $uploadEntry) {
$this->dbManager->freeResult($this->dbManager->execute($stmt, $uploadEntry));
}
$logger = M::mock('Monolog\\Logger');
// new Logger("UploadDaoTest");
$logger->shouldReceive('debug');
$this->uploadPermissionDao = new UploadPermissionDao($this->dbManager, $logger);
$this->assertCountBefore = \Hamcrest\MatcherAssert::getCount();
}
/**
* \brief Display the user record edit form
*
* \param $UserRec - Database users record for the user to be edited.
* \param $SessionIsAdmin - Boolean: This session is by an admin
* \return the text of the display form on success, or error on failure.
*/
private function DisplayForm($UserRec, $SessionIsAdmin)
{
$vars = array('isSessionAdmin' => $SessionIsAdmin, 'userId' => $UserRec['user_pk']);
/* For Admins, get the list of all users
* For non-admins, only show themself
*/
if ($SessionIsAdmin) {
$stmt = __METHOD__ . '.asSessionAdmin';
$sql = "SELECT * FROM users ORDER BY user_name";
$this->dbManager->prepare($stmt, $sql);
$res = $this->dbManager->execute($stmt);
$allUsers = array();
while ($row = $this->dbManager->fetchArray($res)) {
$allUsers[$row['user_pk']] = htmlentities($row['user_name']);
}
$this->dbManager->freeResult($res);
$vars['allUsers'] = $allUsers;
}
$vars['userName'] = $UserRec['user_name'];
$vars['userDescription'] = $UserRec['user_desc'];
$vars['userEMail'] = $UserRec["user_email"];
$vars['eMailNotification'] = $UserRec['email_notify'] == 'y';
if ($SessionIsAdmin) {
$vars['allAccessLevels'] = array(PLUGIN_DB_NONE => _("None (very basic, no database access)"), PLUGIN_DB_READ => _("Read-only (read, but no writes or downloads)"), PLUGIN_DB_WRITE => _("Read-Write (read, download, or edit information)"), PLUGIN_DB_ADMIN => _("Full Administrator (all access including adding and deleting users)"));
$vars['accessLevel'] = $UserRec['user_perm'];
$SelectedFolderPk = $UserRec['root_folder_fk'];
$vars['folderListOption'] = FolderListOption($ParentFolder = -1, $Depth = 0, $IncludeTop = 1, $SelectedFolderPk);
}
$vars['isBlankPassword'] = $UserRec['_blank_pass'] == 'on';
$vars['agentSelector'] = AgentCheckBoxMake(-1, array("agent_unpack", "agent_adj2nest", "wget_agent"), $UserRec['user_name']);
$vars['bucketPool'] = SelectBucketPool($UserRec["default_bucketpool_fk"]);
return $vars;
}
public function testGetAgentFileLicenseMatchesWithLicenseMapping()
{
$this->testDb->createPlainTables(array('license_ref', 'uploadtree', 'license_file', 'agent', 'license_map'));
$this->testDb->insertData_license_ref();
$lic0 = $this->dbManager->getSingleRow("Select * from license_ref limit 1", array(), __METHOD__ . '.anyLicense');
$licRefId = $lic0['rf_pk'];
$licenseFileId = 1;
$pfileId = 42;
$agentId = 23;
$matchPercent = 50;
$uploadtreeId = 512;
$uploadID = 123;
$left = 2009;
$right = 2014;
$agentName = "fake";
$agentRev = 1;
$lic1 = $this->dbManager->getSingleRow("SELECT * FROM license_ref WHERE rf_pk!=\$1 LIMIT 1", array($licRefId), __METHOD__ . '.anyOtherLicense');
$licVarId = $lic1['rf_pk'];
$mydate = "'2014-06-04 14:01:30.551093+02'";
$this->dbManager->insertTableRow('license_map', array('license_map_pk' => 0, 'rf_fk' => $licVarId, 'rf_parent' => $licRefId, 'usage' => LicenseMap::CONCLUSION));
$this->dbManager->queryOnce("INSERT INTO license_file (fl_pk, rf_fk, agent_fk, rf_match_pct, rf_timestamp, pfile_fk)\n VALUES ({$licenseFileId}, {$licVarId}, {$agentId}, {$matchPercent}, {$mydate}, {$pfileId})");
$this->dbManager->queryOnce("INSERT INTO uploadtree (uploadtree_pk, upload_fk, pfile_fk, lft, rgt)\n VALUES ({$uploadtreeId}, {$uploadID}, {$pfileId}, {$left}, {$right})");
$stmt = __METHOD__ . '.insert.agent';
$this->dbManager->prepare($stmt, "INSERT INTO agent (agent_pk, agent_name, agent_rev, agent_enabled) VALUES (\$1,\$2,\$3,\$4)");
$this->dbManager->execute($stmt, array($agentId, $agentName, $agentRev, 'true'));
$licDao = new LicenseDao($this->dbManager);
$itemTreeBounds = new ItemTreeBounds($uploadtreeId, "uploadtree", $uploadID, $left, $right);
$matches = $licDao->getAgentFileLicenseMatches($itemTreeBounds, LicenseMap::CONCLUSION);
$licenseRef = new LicenseRef($licRefId, $lic0['rf_shortname'], $lic0['rf_fullname']);
$agentRef = new AgentRef($agentId, $agentName, $agentRev);
$expected = array(new LicenseMatch($pfileId, $licenseRef, $agentRef, $licenseFileId, $matchPercent));
assertThat($matches, equalTo($expected));
$this->addToAssertionCount(\Hamcrest\MatcherAssert::getCount() - $this->assertCountBefore);
}
private function updateLicense($row, $sameText)
{
$log = "Text of '{$row['shortname']}' already used for '{$sameText['rf_shortname']}'";
$stmt = __METHOD__;
$sql = 'UPDATE license_ref SET ';
$param = array($sameText['rf_pk']);
if (!empty($row['source']) && empty($sameText['rf_source'])) {
$stmt .= '.updSource';
$sql .= ' rf_source=$2';
$param[] = $row['source'];
$log .= ', updated the source';
}
if (false !== $row['risk'] && $row['risk'] !== $sameText['rf_risk']) {
$stmt .= '.updRisk';
$sql .= count($param) == 2 ? ', rf_risk=$3' : 'rf_risk=$';
$param[] = $row['risk'];
$log .= ', updated the risk level';
}
if (count($param) > 1) {
$this->dbManager->prepare("{$sql} WHERE rf_pk=\$1", $stmt);
$res = $this->dbManager->execute($stmt, $param);
$this->dbManager->freeResult($res);
}
return $log;
}
/**
* \brief Database queries
* \returns html table containing query strings, pid, and start time
*/
function DatabaseQueries()
{
$V = "<table border=1>\n";
$head1 = _("PID");
$head2 = _("Query");
$head3 = _("Started");
$head4 = _("Elapsed");
$V .= "<tr><th>{$head1}</th><th>{$head2}</th><th>{$head3}</th><th>{$head4}</th></tr>\n";
$current_query = strcmp($this->pgVersion['server'], "9.2") >= 0 ? "state" : "current_query";
$procpid = strcmp($this->pgVersion['server'], "9.2") >= 0 ? "pid" : "procpid";
$sql = "SELECT {$procpid} processid, {$current_query}, query_start, now()-query_start AS elapsed FROM pg_stat_activity WHERE {$current_query} != '<IDLE>' AND datname = 'fossology' ORDER BY {$procpid}";
$statementName = __METHOD__ . "queryFor_" . $current_query . "_orderBy_" . $procpid;
$this->dbManager->prepare($statementName, $sql);
$result = $this->dbManager->execute($statementName, array());
if (pg_num_rows($result) > 1) {
while ($row = pg_fetch_assoc($result)) {
if ($row[$current_query] == $sql) {
continue;
}
// Don't display this query
$V .= "<tr>";
$V .= "<td>{$row['processid']}</td>";
$V .= "<td>" . htmlspecialchars($row[$current_query]) . "</td>";
$StartTime = substr($row['query_start'], 0, 19);
$V .= "<td>{$StartTime}</td>";
$V .= "<td>{$row['elapsed']}</td>";
$V .= "</tr>\n";
}
} else {
$V .= "<tr><td colspan=4>There are no active FOSSology queries</td></tr>";
}
pg_free_result($result);
$V .= "</table>\n";
return $V;
}
/**
* @brief Return total Job data with time elapsed
* @param $job_pk
* @return $row
*/
public function getDataForASingleJob($job_pk)
{
$statementName = __METHOD__ . "getDataForASingleJob";
$this->dbManager->prepare($statementName, "SELECT *, jq_endtime-jq_starttime as elapsed FROM jobqueue LEFT JOIN job ON job.job_pk = jobqueue.jq_job_fk WHERE jobqueue.jq_pk =\$1");
$result = $this->dbManager->execute($statementName, array($job_pk));
$row = $this->dbManager->fetchArray($result);
$this->dbManager->freeResult($result);
return $row;
}
/**
* @param string $scannerName
* @param int $uploadId
* @return array[] with keys agent_id,agent_rev,agent_name
*/
public function getSuccessfulAgentEntries($scannerName, $uploadId)
{
$stmt = __METHOD__ . ".getAgent.{$scannerName}";
$this->dbManager->prepare($stmt, $sql = "SELECT agent_pk AS agent_id,agent_rev,agent_name " . "FROM agent LEFT JOIN {$scannerName}" . self::ARS_TABLE_SUFFIX . " ON agent_fk=agent_pk " . "WHERE agent_name=\$2 AND agent_enabled AND upload_fk=\$1 AND ars_success " . "ORDER BY agent_id DESC");
$res = $this->dbManager->execute($stmt, array($uploadId, $scannerName));
$agents = $this->dbManager->fetchAll($res);
$this->dbManager->freeResult($res);
return $agents;
}
/**
* @param int $uploadId
* @param int $groupId
* @return int
*/
public function getReusedUpload($uploadId, $groupId)
{
$statementName = __METHOD__;
$this->dbManager->prepare($statementName, "SELECT reused_upload_fk, reused_group_fk, reuse_mode FROM upload_reuse WHERE upload_fk = \$1 AND group_fk=\$2");
$res = $this->dbManager->execute($statementName, array($uploadId, $groupId));
$reusedPairs = $this->dbManager->fetchAll($res);
$this->dbManager->freeResult($res);
return $reusedPairs;
}
/**
*
* @param string $tablename
* @param string $columnname
* @param array $map using keys
* @return int
*/
private function checkDatabaseEnum($tablename, $columnname, $map)
{
$errors = 0;
$stmt = __METHOD__ . ".{$tablename}.{$columnname}";
$sql = "SELECT {$columnname},count(*) FROM {$tablename} GROUP BY {$columnname}";
$this->dbManager->prepare($stmt, $sql);
$res = $this->dbManager->execute($stmt);
while ($row = $this->dbManager->fetchArray($res)) {
if (!array_key_exists($row[$columnname], $map)) {
echo "(-) found invalid {$columnname} '" . $row[$columnname] . "' in table '{$tablename}'\n";
$errors++;
} else {
if ($this->verbose) {
echo "(+) found valid {$columnname} '" . $row[$columnname] . "' in table '{$tablename}'\n";
}
}
}
$this->dbManager->freeResult($res);
return $errors;
}
public function getPermissionGroups($uploadId)
{
$this->dbManager->prepare($stmt = __METHOD__, "SELECT perm_upload_pk, perm, group_pk, group_name\n FROM groups, perm_upload\n WHERE group_fk=group_pk AND upload_fk=\$1\n ORDER BY group_name");
$res = $this->dbManager->execute($stmt, array($uploadId));
$groupMap = array();
while ($row = $this->dbManager->fetchArray($res)) {
$groupMap[$row['group_pk']] = $row;
}
$this->dbManager->freeResult($res);
return $groupMap;
}
private function getGroupMembers($groupsWhereUserIsAdmin)
{
$this->dbManager->prepare($stmt = __METHOD__, "SELECT user_name,gum.group_fk FROM group_user_member gum, users WHERE user_fk=user_pk");
$res = $this->dbManager->execute($stmt);
$gum = array();
while ($row = $this->dbManager->fetchArray($res)) {
if (array_key_exists($row['group_fk'], $groupsWhereUserIsAdmin)) {
$gum[] = array($row['user_name'], $row['group_fk']);
}
}
$this->dbManager->freeResult($res);
return $gum;
}
public function getMainLicenseIds($uploadId, $groupId)
{
$stmt = __METHOD__;
$sql = "SELECT rf_fk FROM upload_clearing_license WHERE upload_fk=\$1 AND group_fk=\$2";
$this->dbManager->prepare($stmt, $sql);
$res = $this->dbManager->execute($stmt, array($uploadId, $groupId));
$ids = array();
while ($row = $this->dbManager->fetchArray($res)) {
$ids[$row['rf_fk']] = $row['rf_fk'];
}
$this->dbManager->freeResult($res);
return $ids;
}
public function getFolderChildFolders($folderId)
{
$results = array();
$stmtFolder = __METHOD__;
$sqlFolder = "SELECT foldercontents_pk,foldercontents_mode, folder_name FROM foldercontents,folder " . "WHERE foldercontents.parent_fk=\$1 AND foldercontents.child_id=folder.folder_pk" . " AND foldercontents_mode=" . self::MODE_FOLDER;
$this->dbManager->prepare($stmtFolder, $sqlFolder);
$res = $this->dbManager->execute($stmtFolder, array($folderId));
while ($row = $this->dbManager->fetchArray($res)) {
$results[$row['foldercontents_pk']] = $row;
}
$this->dbManager->freeResult($res);
return $results;
}
public function getTopLevelLicenseRefs()
{
$licenseView = new LicenseViewProxy($this->groupId, array('columns' => array('rf_pk', 'rf_shortname', 'rf_fullname')), 'license_visible');
$query = $licenseView->asCTE() . ' SELECT rf_pk, rf_shortname, rf_fullname FROM ' . $licenseView->getDbViewName() . ' LEFT JOIN license_map ON rf_pk=rf_fk AND rf_fk!=rf_parent AND usage=$1' . ' WHERE license_map_pk IS NULL';
$stmt = __METHOD__ . ".{$this->usageId},{$this->groupId}";
$this->dbManager->prepare($stmt, $query);
$res = $this->dbManager->execute($stmt, array($this->usageId));
$topLevel = array();
while ($row = $this->dbManager->fetchArray($res)) {
$topLevel[$row['rf_pk']] = new LicenseRef($row['rf_pk'], $row['rf_shortname'], $row['rf_fullname']);
}
return $topLevel;
}
/**
* @param int $userId
* @param int $groupId
* @param int $uploadTreeId
* @param bool[] $licenseRemovals
* @param string $refText
* @return int lrp_pk on success or -1 on fail
*/
public function insertBulkLicense($userId, $groupId, $uploadTreeId, $licenseRemovals, $refText)
{
$licenseRefBulkIdResult = $this->dbManager->getSingleRow("INSERT INTO license_ref_bulk (user_fk, group_fk, uploadtree_fk, rf_text)\n VALUES (\$1,\$2,\$3,\$4) RETURNING lrb_pk", array($userId, $groupId, $uploadTreeId, $refText), __METHOD__ . '.getLrb');
if ($licenseRefBulkIdResult === false) {
return -1;
}
$bulkId = $licenseRefBulkIdResult['lrb_pk'];
$stmt = __METHOD__ . '.insertAction';
$this->dbManager->prepare($stmt, "INSERT INTO license_set_bulk (lrb_fk, rf_fk, removing) VALUES (\$1,\$2,\$3)");
foreach ($licenseRemovals as $licenseId => $removing) {
$this->dbManager->execute($stmt, array($bulkId, $licenseId, $this->dbManager->booleanToDb($removing)));
}
return $bulkId;
}
/**
* @return string[] with keys being shortname
*/
protected function getLicenseTexts()
{
$licenseTexts = array();
$licenseViewProxy = new LicenseViewProxy($this->groupId, array(LicenseViewProxy::OPT_COLUMNS => array('rf_pk', 'rf_shortname', 'rf_text')));
$this->dbManager->prepare($stmt = __METHOD__, $licenseViewProxy->getDbViewQuery());
$res = $this->dbManager->execute($stmt);
while ($row = $this->dbManager->fetchArray($res)) {
if (array_key_exists($row['rf_pk'], $this->includedLicenseIds)) {
$licenseTexts[$row['rf_shortname']] = $row['rf_text'];
}
}
$this->dbManager->freeResult($res);
return $licenseTexts;
}
protected function getCopyrights($upload_pk, $item, $uploadTreeTableName, $agentId, $type, $filter)
{
$offset = GetParm('iDisplayStart', PARM_INTEGER);
$limit = GetParm('iDisplayLength', PARM_INTEGER);
$tableName = $this->getTableName($type);
$orderString = $this->getOrderString();
list($left, $right) = $this->uploadDao->getLeftAndRight($item, $uploadTreeTableName);
if ($filter == "") {
$filter = "none";
}
$sql_upload = "";
if ('uploadtree_a' == $uploadTreeTableName) {
$sql_upload = " AND UT.upload_fk={$upload_pk} ";
}
$join = "";
$filterQuery = "";
if ($type == 'statement' && $filter == "nolic") {
$noLicStr = "No_license_found";
$voidLicStr = "Void";
$join = " INNER JOIN license_file AS LF on cp.pfile_fk=LF.pfile_fk ";
$filterQuery = " AND LF.rf_fk IN (SELECT rf_pk FROM license_ref WHERE rf_shortname IN ('{$noLicStr}','{$voidLicStr}')) ";
} else {
// No filter, nothing to do
}
$params = array($left, $right, $type, $agentId);
$filterParms = $params;
$searchFilter = $this->addSearchFilter($filterParms);
$unorderedQuery = "FROM {$tableName} AS cp " . "INNER JOIN {$uploadTreeTableName} AS UT ON cp.pfile_fk = UT.pfile_fk " . $join . "WHERE cp.content!='' " . "AND ( UT.lft BETWEEN \$1 AND \$2 ) " . "AND cp.type = \$3 " . "AND cp.agent_fk= \$4 " . $sql_upload;
$totalFilter = $filterQuery . " " . $searchFilter;
$grouping = " GROUP BY content ";
$countQuery = "SELECT count(*) FROM (SELECT content, count(*) {$unorderedQuery} {$totalFilter} {$grouping}) as K";
$iTotalDisplayRecordsRow = $this->dbManager->getSingleRow($countQuery, $filterParms, __METHOD__ . $tableName . ".count");
$iTotalDisplayRecords = $iTotalDisplayRecordsRow['count'];
$countAllQuery = "SELECT count(*) FROM (SELECT content, count(*) {$unorderedQuery}{$grouping}) as K";
$iTotalRecordsRow = $this->dbManager->getSingleRow($countAllQuery, $params, __METHOD__, $tableName . "count.all");
$iTotalRecords = $iTotalRecordsRow['count'];
$range = "";
$filterParms[] = $offset;
$range .= ' OFFSET $' . count($filterParms);
$filterParms[] = $limit;
$range .= ' LIMIT $' . count($filterParms);
$sql = "SELECT content, hash, count(*) as copyright_count " . $unorderedQuery . $totalFilter . " GROUP BY content, hash " . $orderString . $range;
$statement = __METHOD__ . $filter . $tableName . $uploadTreeTableName;
$this->dbManager->prepare($statement, $sql);
$result = $this->dbManager->execute($statement, $filterParms);
$rows = $this->dbManager->fetchAll($result);
$this->dbManager->freeResult($result);
return array($rows, $iTotalDisplayRecords, $iTotalRecords);
}
public function testGetEstimatedTimeShouldNotDivideByZero()
{
$this->dbManager->prepare($stmt = 'insert.jobqueue', "INSERT INTO jobqueue (jq_pk, jq_job_fk, jq_type, jq_args, jq_starttime, jq_endtime, jq_endtext, jq_end_bits, jq_schedinfo, jq_itemsprocessed)" . "VALUES (\$1, \$2, \$3, \$4,\$5, \$6,\$7,\$8,\$9,\$10)");
$nowTime = time();
$diffTime = 2345;
$nomosTime = date('Y-m-d H:i:sO', $nowTime - $diffTime);
$uploadArrayQue = array(array(8, $jobId = 1, $jqType = "nomos", 1, $nomosTime, null, "Started", 0, "localhost.5963", $itemNomos = 147), array(1, $jobId, "ununpack", 1, "2015-04-21 18:29:19.23825+05:30", "2015-04-21 18:29:26.396562+05:30", "Completed", 1, null, $itemCount = 646));
foreach ($uploadArrayQue as $uploadEntry) {
$this->dbManager->freeResult($this->dbManager->execute($stmt, $uploadEntry));
}
$showJobsDaoMock = M::mock('Fossology\\Lib\\Dao\\ShowJobsDao[getNumItemsPerSec]', array($this->dbManager, $this->uploadDao));
$showJobsDaoMock->shouldReceive('getNumItemsPerSec')->andReturn(0);
$estimated = $showJobsDaoMock->getEstimatedTime($jobId, $jqType);
assertThat($estimated, equalTo('0:00:00'));
}
/**
* @param ItemTreeBounds $item
* @param string $hash
* @param int $userId
* @param string $cpTable
*/
public function rollbackTable($item, $hash, $userId, $cpTable = 'copyright')
{
$itemTable = $item->getUploadTreeTableName();
$stmt = __METHOD__ . ".{$cpTable}.{$itemTable}";
$params = array($hash, $item->getLeft(), $item->getRight(), $userId);
$sql = "UPDATE {$cpTable} AS cpr SET content = cpa.oldtext, hash = \$1\n FROM " . $cpTable . "_audit as cpa, {$itemTable} AS ut\n WHERE cpr.pfile_fk = ut.pfile_fk\n AND cpr.ct_pk = cpa.ct_fk\n AND md5(cpa.oldtext) = \$1\n AND ( ut.lft BETWEEN \$2 AND \$3 )\n AND cpa.user_fk=\$4";
if ('uploadtree_a' == $item->getUploadTreeTableName()) {
$params[] = $item->getUploadId();
$sql .= " AND ut.upload_fk=\$" . count($params);
$stmt .= '.upload';
}
$this->dbManager->prepare($stmt, "{$sql}");
$resource = $this->dbManager->execute($stmt, $params);
$this->dbManager->freeResult($resource);
}
/**
* @brief Returns Estimated time using jobid
* @param int $job_pk
* @param string $jq_Type
* @param float $filesPerSec
* @param int $uploadId
* @return Returns empty if estimated time is 0 else returns time.
**/
public function getEstimatedTime($job_pk, $jq_Type = '', $filesPerSec = 0, $uploadId = 0)
{
if (!empty($uploadId)) {
$itemCount = $this->dbManager->getSingleRow("SELECT jq_itemsprocessed FROM jobqueue INNER JOIN job ON jq_job_fk=job_pk " . " WHERE jq_type LIKE 'ununpack' AND jq_end_bits ='1' AND job_upload_fk=\$1", array($uploadId), __METHOD__ . '.ununpack_might_be_in_other_job');
} else {
$itemCount = $this->dbManager->getSingleRow("SELECT jq_itemsprocessed FROM jobqueue WHERE jq_type LIKE 'ununpack' AND jq_end_bits ='1' AND jq_job_fk =\$1", array($job_pk), __METHOD__ . '.ununpack_must_be_in_this_job');
}
if (!empty($itemCount['jq_itemsprocessed'])) {
$selectCol = "jq_type, jq_endtime, jq_starttime, jq_itemsprocessed";
if (empty($jq_Type)) {
$removeType = "jq_type NOT LIKE 'ununpack' AND jq_type NOT LIKE 'reportgen' AND jq_type NOT LIKE 'decider' AND";
/* get starttime endtime and jobtype form jobqueue for a jobid except $removeType */
$statementName = __METHOD__ . "{$selectCol}.{$removeType}";
$this->dbManager->prepare($statementName, "SELECT {$selectCol} FROM jobqueue WHERE {$removeType} jq_job_fk =\$1 ORDER BY jq_type DESC");
$result = $this->dbManager->execute($statementName, array($job_pk));
} else {
$statementName = __METHOD__ . "{$selectCol}.{$jq_Type}";
$this->dbManager->prepare($statementName, "SELECT {$selectCol} FROM jobqueue WHERE jq_type LIKE '{$jq_Type}' AND jq_job_fk =\$1");
$result = $this->dbManager->execute($statementName, array($job_pk));
}
$estimatedArray = array();
// estimate time for each agent
while ($row = $this->dbManager->fetchArray($result)) {
$timeOfCompletion = 0;
if (empty($row['jq_endtime']) && !empty($row['jq_starttime'])) {
// for agent started and not ended
if (empty($filesPerSec)) {
$burnTime = time() - strtotime($row['jq_starttime']);
$filesPerSec = $this->getNumItemsPerSec($row['jq_itemsprocessed'], $burnTime);
}
if (!empty($filesPerSec)) {
$timeOfCompletion = ($itemCount['jq_itemsprocessed'] - $row['jq_itemsprocessed']) / $filesPerSec;
}
array_push($estimatedArray, $timeOfCompletion);
}
}
if (empty($estimatedArray)) {
return "";
} else {
$estimatedTime = round(max($estimatedArray));
// collecting max agent time in seconds
return intval($estimatedTime / 3600) . gmdate(":i:s", $estimatedTime);
// convert seconds to time and return
}
}
}
function addFunctions($schema)
{
// prosrc
// proretset == setof
$sql = "SELECT proname AS name,\n pronargs AS input_num,\n proargnames AS input_names,\n proargtypes AS input_type,\n proargmodes AS input_modes,\n proretset AS setof,\n prorettype AS output_type\n FROM pg_proc AS proc\n INNER JOIN pg_language AS lang ON proc.prolang = lang.oid\n WHERE lang.lanname = 'plpgsql'\n ORDER BY proname;";
$stmt = __METHOD__;
$this->dbman->prepare($stmt, $sql);
$result = $this->dbman->execute($stmt);
while ($row = $this->dbman->fetchArray($result)) {
$sql = "CREATE or REPLACE function " . $row['proname'] . "()";
$sql .= ' RETURNS ' . "TBD" . ' AS $$';
$sql .= " " . $row['prosrc'];
$schema['FUNCTION'][$row['proname']] = $sql;
}
$this->dbman->freeResult($result);
return $schema;
}
/**
* @param int $uploadTreeId
* @param int|null $clearingId
* @return Highlight[]
*/
public function getHighlightBulk($uploadTreeId, $clearingId = null)
{
$stmt = __METHOD__;
$sql = "SELECT h.clearing_event_fk, h.start, h.len, ce.rf_fk, rf_text\n FROM clearing_event ce\n INNER JOIN highlight_bulk h ON ce.clearing_event_pk = h.clearing_event_fk\n INNER JOIN license_ref_bulk lrb ON lrb.lrb_pk = h.lrb_fk\n WHERE ce.uploadtree_fk = \$1";
$params = array($uploadTreeId);
if (!empty($clearingId)) {
$stmt .= ".clearingId";
$params[] = $clearingId;
$sql .= " AND h.clearing_event_fk = \$" . count($params);
}
$this->dbManager->prepare($stmt, $sql);
$result = $this->dbManager->execute($stmt, $params);
$highlightEntries = array();
while ($row = $this->dbManager->fetchArray($result)) {
$newHighlight = new Highlight(intval($row['start']), intval($row['start'] + $row['len']), Highlight::BULK, 0, 0);
$newHighlight->setLicenseId($row['rf_fk']);
$highlightEntries[] = $newHighlight;
}
$this->dbManager->freeResult($result);
return $highlightEntries;
}
public function getLicenseShortnamesContained(ItemTreeBounds $itemTreeBounds, $latestSuccessfulAgentIds = null, $filterLicenses = array('VOID'))
{
$uploadTreeTableName = $itemTreeBounds->getUploadTreeTableName();
$noLicenseFoundStmt = empty($filterLicenses) ? "" : " AND rf_shortname NOT IN (" . implode(", ", array_map(function ($name) {
return "'" . $name . "'";
}, $filterLicenses)) . ")";
$statementName = __METHOD__ . '.' . $uploadTreeTableName;
$agentFilter = '';
if (is_array($latestSuccessfulAgentIds)) {
$agentIdSet = "{" . implode(',', $latestSuccessfulAgentIds) . "}";
$statementName .= ".{$agentIdSet}";
$agentFilter = " AND agent_fk=ANY('{$agentIdSet}')";
}
$this->dbManager->prepare($statementName, "SELECT license_ref.rf_shortname\n FROM license_file JOIN license_ref ON license_file.rf_fk = license_ref.rf_pk\n INNER JOIN {$uploadTreeTableName} uploadTree ON uploadTree.pfile_fk=license_file.pfile_fk\n WHERE upload_fk=\$1\n AND lft BETWEEN \$2 AND \$3\n {$noLicenseFoundStmt} {$agentFilter}\n GROUP BY rf_shortname\n ORDER BY rf_shortname ASC");
$result = $this->dbManager->execute($statementName, array($itemTreeBounds->getUploadId(), $itemTreeBounds->getLeft(), $itemTreeBounds->getRight()));
$licenses = array();
while ($row = $this->dbManager->fetchArray($result)) {
$licenses[] = $row['rf_shortname'];
}
$this->dbManager->freeResult($result);
return $licenses;
}
/**
* \brief Display the tag info data associated with the file.
*/
function ShowTagInfo($Upload, $Item)
{
$VT = "";
$text = _("Tag Info");
$VT .= "<H2>{$text}</H2>\n";
$groupId = Auth::getGroupId();
$row = $this->uploadDao->getUploadEntry($Item);
if (empty($row)) {
$text = _("Invalid URL, nonexistant item");
return "<h2>{$text} {$Item}</h2>";
}
$lft = $row["lft"];
$rgt = $row["rgt"];
$upload_pk = $row["upload_fk"];
if (empty($lft)) {
$text = _("Upload data is unavailable. It needs to be unpacked.");
return "<h2>{$text} uploadtree_pk: {$Item}</h2>";
}
$sql = "SELECT * FROM uploadtree INNER JOIN (SELECT * FROM tag_file,tag WHERE tag_pk = tag_fk) T\n ON uploadtree.pfile_fk = T.pfile_fk WHERE uploadtree.upload_fk = \$1\n AND uploadtree.lft >= \$2 AND uploadtree.rgt <= \$3 UNION SELECT * FROM uploadtree INNER JOIN\n (SELECT * FROM tag_uploadtree,tag WHERE tag_pk = tag_fk) T ON uploadtree.uploadtree_pk = T.uploadtree_fk\n WHERE uploadtree.upload_fk = \$1 AND uploadtree.lft >= \$2 AND uploadtree.rgt <= \$3 ORDER BY ufile_name";
$this->dbManager->prepare(__METHOD__, $sql);
$result = $this->dbManager->execute(__METHOD__, array($upload_pk, $lft, $rgt));
if (pg_num_rows($result) > 0) {
$VT .= "<table border=1>\n";
$text = _("FileName");
$text2 = _("Tag");
$VT .= "<tr><th>{$text}</th><th>{$text2}</th><th></th></tr>\n";
while ($row = pg_fetch_assoc($result)) {
$VT .= "<tr><td align='center'>" . $row['ufile_name'] . "</td><td align='center'>" . $row['tag'] . "</td>";
if ($this->uploadDao->isAccessible($upload_pk, $groupId)) {
$VT .= "<td align='center'><a href='" . Traceback_uri() . "?mod=tag&action=edit&upload={$Upload}&item=" . $row['uploadtree_pk'] . "&tag_file_pk=" . $row['tag_file_pk'] . "'>View</a></td></tr>\n";
} else {
$VT .= "<td align='center'></td></tr>\n";
}
}
$VT .= "</table><p>\n";
}
$this->dbManager->freeResult($result);
return $VT;
}