/**
*
* @param type $db - ADONewConnection.
* @param type $cropID - Crop ID to search from concepts table.
* @return \GenePoolConcept - GenePoolConcept Object and its Concepts.
*/
public function getGenePoolConcept($taxonID)
{
global $db;
$query = "SELECT DISTINCT c.Crop_ID, c.Concept_ID, c.Concept_Type, c.Concept_Level, s2.*\n FROM concepts c\n INNER JOIN species s ON c.Taxon_ID = s.Taxon_ID\n JOIN species s2 ON s.Valid_Taxon_ID = s2.Taxon_ID\n WHERE c.Concept_ID = (\n SELECT c.Concept_ID\n FROM concepts c\n WHERE c.Concept_Level in ('1A','Crop taxa') and c.Taxon_ID = {$taxonID}\n ) AND s2.Taxon_ID = s2.Valid_Taxon_ID\n ORDER BY c.Concept_Level, s2.Scientific_Name";
$result = $db->getAll($query);
$genePoolConcept = null;
$cropID = null;
// Validate if $result has not data.
if (!empty($result)) {
$genePoolConcept = new GenePoolConcept();
$theConceptID = null;
$theConceptType = null;
$array_id = array();
foreach ($result as $db_concept) {
$concept = new Concept();
$concept->setConceptType(trim($db_concept["Concept_Type"]));
$concept->setConceptLevel(trim($db_concept["Concept_Level"]));
$concept->setConceptID(trim($db_concept["Concept_ID"]));
$concept->setCropID(trim($db_concept["Crop_ID"]));
if ($cropID == null) {
$cropID = trim($db_concept["Crop_ID"]);
}
if ($theConceptID == null) {
$theConceptID = $concept->getConceptID();
}
if ($theConceptType == null) {
$theConceptType = $concept->getConceptType();
}
/* * ** TAXON - BASIC INFORMATION *** */
$taxon = new Taxon(trim($db_concept["Valid_Taxon_ID"]));
// Taxon_ID will be the identifier of the suggestion list.
$taxon->setCommonName(trim($db_concept["Common_Name"]));
$taxon->setFamily(trim($db_concept["Family"]));
$taxon->setFamilyAuthor(trim($db_concept["Family_Author"]));
$taxon->setGenus(trim($db_concept["Genus"]));
$taxon->setSpecie(trim($db_concept["Species"]));
$taxon->setSpecieAuthor(trim($db_concept["Species_Author"]));
$taxon->setSubspecie(trim($db_concept["Subsp"]));
$taxon->setSubspecieAuthor($db_concept["Subsp_Author"]);
$taxon->setVariety(trim($db_concept["Var"]));
$taxon->setVarietyAuthor(trim($db_concept["Var_Author"]));
$taxon->setForm(trim($db_concept["Form"]));
$taxon->setFormAuthor(trim($db_concept["Form_Author"]));
$taxon->setMainCrop(trim($db_concept["Main_Crop"]));
$taxon->setScientificName(trim($db_concept["Scientific_Name"]));
$concept->setTaxon($taxon);
if ($concept->getConceptLevel() == "Crop taxa") {
$genePoolConcept->addCropTaxa($taxon);
} else {
// if concept level = 1A it should be also in the genepool concept list.
if ($concept->getConceptLevel() == "1A") {
$genePoolConcept->addCropTaxa($taxon);
}
$genePoolConcept->addConcept($concept);
}
}
$taxonDAO = DAOFactory::getDAOFactory()->getTaxonDAO();
$mainTaxon = $taxonDAO->getTaxon($cropID);
$mainCrop = new Concept($mainTaxon->getId());
$mainCrop->setConceptID($theConceptID);
$mainCrop->setConceptType($theConceptType);
$mainCrop->setCropID($cropID);
$mainCrop->setTaxon($mainTaxon);
$genePoolConcept->setMainCrop($mainCrop);
}
return $genePoolConcept;
}
public function getTaxaInRegion($term)
{
global $db;
$query = "SELECT s.*\n FROM distribution d\n INNER JOIN species s ON d.Taxon_ID = s.Taxon_ID\n INNER JOIN countries c ON d.Country = c.Code\n WHERE c.Region like '" . $term . "%'\n AND s.Main_Crop = 0\n GROUP BY s.Taxon_ID\n ORDER BY s.Genus, s.Species, s.Subsp, s.Var ASC";
$results = $db->getAll($query);
$taxa = array();
foreach ($results as $r) {
$taxon = new Taxon($r["Taxon_ID"]);
$taxon->setFamily(trim($r["Family"]));
$taxon->setFamilyAuthor(trim($r["FamilyAuthor"]));
$taxon->setCommonName(trim($r["Common_Name"]));
$taxon->setGenus(trim($r["Genus"]));
$taxon->setSpecie(trim($r["Species"]));
$taxon->setSpecieAuthor(trim($r["Species_Author"]));
$taxon->setSubspecie(trim($r["Subsp"]));
$taxon->setSubspecieAuthor($r["Subsp_Author"]);
$taxon->setVariety(trim($r["Var"]));
$taxon->setVarietyAuthor(trim($r["Var_Author"]));
$taxon->setForm(trim($r["Form"]));
$taxon->setFormAuthor(trim($r["Form_Author"]));
$taxon->setMainCrop(trim($r["Main_Crop"]));
$taxon->setScientificName(trim($r["Scientific_Name"]));
array_push($taxa, $taxon);
}
return $taxa;
}
