$urlPrefix .= ':' . $_SERVER["SERVER_PORT"];
}
$urlPrefix .= $clientRoot . (substr($clientRoot, -1) == '/' ? '' : '/');
$feedLink = $urlPrefix . 'webservices/dwc/rss.xml';
echo '<a href="' . $feedLink . '" target="_blank">' . $feedLink . '</a>';
} else {
echo '--feed not published for any of the collections within the portal--';
}
?>
</div>
<?php
if ($collId) {
if ($action == 'Create/Refresh Darwin Core Archive') {
echo '<ul>';
$dwcaManager->setVerbose(1);
$dwcaManager->createDwcArchive();
$dwcaManager->writeRssFile();
echo '</ul>';
}
if ($dwcaArr = $dwcaManager->getDwcaItems($collId)) {
foreach ($dwcaArr as $k => $v) {
?>
<div style="margin:10px;">
<div>
<b>Title:</b> <?php
echo $v['title'];
?>
<form action="datapublisher.php" method="post" style="display:inline;" onsubmit="return window.confirm('Are you sure you want to delete this archive?');">
<input type="hidden" name="colliddel" value="<?php
echo $v['collid'];
public function exportDataset($dsid)
{
//Get occurrence records
$zip = array_key_exists('zip', $_POST) ? $_POST['zip'] : 0;
$format = $_POST['format'];
$extended = array_key_exists('extended', $_POST) ? $_POST['extended'] : 0;
$redactLocalities = 1;
$rareReaderArr = array();
if ($IS_ADMIN || array_key_exists("CollAdmin", $userRights)) {
$redactLocalities = 0;
} elseif (array_key_exists("RareSppAdmin", $userRights) || array_key_exists("RareSppReadAll", $userRights)) {
$redactLocalities = 0;
} else {
if (array_key_exists('CollEditor', $userRights)) {
$rareReaderArr = $userRights['CollEditor'];
}
if (array_key_exists('RareSppReader', $userRights)) {
$rareReaderArr = array_unique(array_merge($rareReaderArr, $userRights['RareSppReader']));
}
}
$dwcaHandler = new DwcArchiverOccurrence();
$dwcaHandler->setCharSetOut($cSet);
$dwcaHandler->setSchemaType($schema);
$dwcaHandler->setExtended($extended);
$dwcaHandler->setDelimiter($format);
$dwcaHandler->setVerbose(0);
$dwcaHandler->setRedactLocalities($redactLocalities);
if ($rareReaderArr) {
$dwcaHandler->setRareReaderArr($rareReaderArr);
}
$occurManager = new OccurrenceManager();
$dwcaHandler->setCustomWhereSql($occurManager->getSqlWhere());
$outputFile = null;
if ($zip) {
//Ouput file is a zip file
$includeIdent = array_key_exists('identifications', $_POST) ? 1 : 0;
$dwcaHandler->setIncludeDets($includeIdent);
$images = array_key_exists('images', $_POST) ? 1 : 0;
$dwcaHandler->setIncludeImgs($images);
$outputFile = $dwcaHandler->createDwcArchive('webreq');
} else {
//Output file is a flat occurrence file (not a zip file)
$outputFile = $dwcaHandler->getOccurrenceFile();
}
//ob_start();
$contentDesc = '';
if ($schema == 'dwc') {
$contentDesc = 'Darwin Core ';
} else {
$contentDesc = 'Symbiota ';
}
$contentDesc .= 'Occurrence ';
if ($zip) {
$contentDesc .= 'Archive ';
}
$contentDesc .= 'File';
header('Content-Description: ' . $contentDesc);
if ($zip) {
header('Content-Type: application/zip');
} elseif ($format == 'csv') {
header('Content-Type: text/csv; charset=' . $charset);
} else {
header('Content-Type: text/html; charset=' . $charset);
}
header('Content-Disposition: attachment; filename=' . basename($outputFile));
header('Content-Transfer-Encoding: binary');
header('Expires: 0');
header('Cache-Control: must-revalidate, post-check=0, pre-check=0');
header('Pragma: public');
header('Content-Length: ' . filesize($outputFile));
ob_clean();
flush();
//od_end_clean();
readfile($outputFile);
unlink($outputFile);
}
$stArr = array_merge($searchStArr, $collStArr);
$occurManager->setSearchTermsArr($stArr);
}
if ($schema == "backup") {
$collid = $_POST["collid"];
if ($collid && is_numeric($collid)) {
//check permissions due to sensitive localities not being redacted
if ($isAdmin || array_key_exists("CollAdmin", $userRights) && in_array($collid, $userRights["CollAdmin"])) {
$dwcaHandler->setSchemaType('backup');
$dwcaHandler->setCharSetOut($cSet);
$dwcaHandler->setVerbose(0);
$dwcaHandler->setIncludeDets(1);
$dwcaHandler->setIncludeImgs(1);
$dwcaHandler->setRedactLocalities(0);
$dwcaHandler->setCollArr($collid);
$archiveFile = $dwcaHandler->createDwcArchive();
if ($archiveFile) {
//ob_start();
header('Content-Description: Symbiota Occurrence Backup File (DwC-Archive data package)');
header('Content-Type: application/zip');
header('Content-Disposition: attachment; filename=' . basename($archiveFile));
header('Content-Transfer-Encoding: binary');
header('Expires: 0');
header('Cache-Control: must-revalidate, post-check=0, pre-check=0');
header('Pragma: public');
header('Content-Length: ' . filesize($archiveFile));
//od_end_clean();
readfile($archiveFile);
unlink($archiveFile);
} else {
echo 'ERROR creating output file. Query probably did not include any records.';
if ($customField2) {
$dwcaHandler->addCondition($customField2, $_POST['ct2'], $_POST['cv2']);
}
//Set GeoLocate CoGe variables
$dwcaHandler->setGeolocateVariables(array('cogecomm' => $_POST['cogecomm'], 'cogename' => $_POST['cogename'], 'cogedescr' => $_POST['cogedescr']));
//Set direct path to file
$tPath = $SERVER_ROOT;
if (substr($tPath, -1) != '/' && substr($tPath, -1) != '\\') {
$tPath .= '/';
}
$pathFrag = 'temp/data/geolocate/';
$tPath .= $pathFrag;
$dwcaHandler->setTargetPath($tPath);
$cnt = $dwcaHandler->getOccurrenceCnt();
$fileName = 'CoGe' . '_' . time();
$path = $dwcaHandler->createDwcArchive($fileName);
//Set URL path to file
$urlPrefix = "http://";
if (!empty($_SERVER['HTTPS']) && $_SERVER['HTTPS'] !== 'off' || $_SERVER['SERVER_PORT'] == 443) {
$urlPrefix = "https://";
}
$urlPrefix .= $_SERVER["SERVER_NAME"];
if ($_SERVER["SERVER_PORT"] && $_SERVER["SERVER_PORT"] != 80) {
$urlPrefix .= ':' . $_SERVER["SERVER_PORT"];
}
$urlPath = $urlPrefix . $CLIENT_ROOT;
if (substr($urlPath, -1) != '/' && substr($urlPath, -1) != '\\') {
$urlPath .= '/';
}
$urlPath .= $pathFrag . $fileName . '_DwC-A.zip';
if ($cnt) {
$dwcaHandler->setCharSetOut('UTF-8');
$dwcaHandler->setSchemaType('coge');
$dwcaHandler->setExtended(false);
$dwcaHandler->setDelimiter('csv');
$dwcaHandler->setVerbose(0);
$dwcaHandler->setRedactLocalities(0);
$dwcaHandler->setIncludeDets(0);
$dwcaHandler->setIncludeImgs(0);
$dwcaHandler->addCondition('decimallatitude', 'NULL');
$dwcaHandler->addCondition('decimallongitude', 'NULL');
$dwcaHandler->addCondition('locality', 'NOTNULL');
if ($processingStatus) {
$dwcaHandler->addCondition('processingstatus', 'EQUALS', $processingStatus);
}
if ($customField1) {
$dwcaHandler->addCondition($customField1, $_POST['ct1'], $_POST['cv1']);
}
if ($customField2) {
$dwcaHandler->addCondition($customField2, $_POST['ct2'], $_POST['cv2']);
}
$tPath = $SERVER_ROOT;
if (substr($tPath, -1) != '/' && substr($tPath, -1) != '\\') {
$tPath .= '/';
}
$tPath .= "temp/data/geolocate/";
$dwcaHandler->setTargetPath($tPath);
$retArr['cnt'] = $dwcaHandler->getOccurrenceCnt();
$retArr['path'] = $dwcaHandler->createDwcArchive('CoGeCommunityFile' . '_' . time());
}
}
echo json_encode($retArr);
