/**
* Save changes to article.
* @param $request Request
* @return int the article ID
*/
function execute(&$request)
{
$articleDao =& DAORegistry::getDAO('ArticleDAO');
$article =& $this->article;
$articleSitesData = $this->getData('articleSites');
$articleSites = $article->getArticleSites();
import('classes.journal.TrialSite');
import('classes.article.ArticleSite');
// Remove deleted article sites
foreach ($articleSites as $articleSite) {
$isPresent = false;
foreach ($articleSitesData as $articleSiteData) {
if (!empty($articleSiteData['id'])) {
if ($articleSite->getId() == $articleSiteData['id']) {
$isPresent = true;
}
}
}
if (!$isPresent) {
$article->removeArticleSite($articleSite->getId());
}
unset($isPresent);
unset($articleSite);
}
// Update / Insters article sites
foreach ($articleSitesData as $articleSiteData) {
if (isset($articleSiteData['id'])) {
$articleSite = $article->getArticleSite($articleSiteData['id']);
$isExistingSite = true;
} else {
$articleSite = new ArticleSite();
$isExistingSite = false;
}
$articleSite->setArticleId($article->getId());
if ($articleSiteData['siteSelect'] == "OTHER") {
$trialSite = new TrialSite();
$trialSite->setName($articleSiteData['siteName']);
$trialSite->setAddress($articleSiteData['siteAddress']);
$trialSite->setCity($articleSiteData['siteCity']);
$trialSite->setRegion($articleSiteData['siteRegion']);
$trialSite->setLicensure($articleSiteData['siteLicensure']);
$trialSite->setAccreditation($articleSiteData['siteAccreditation']);
$articleSite->setSiteId($this->trialSiteDao->insertTrialSite($trialSite));
} else {
$articleSite->setSiteId($articleSiteData['siteSelect']);
}
$articleSite->setAuthority($articleSiteData['authority']);
$articleSite->setERCId($articleSiteData['erc']);
$articleSite->setPrimaryPhone($articleSiteData['primaryPhone']);
$articleSite->setSecondaryPhone($articleSiteData['secondaryPhone']);
$articleSite->setFax($articleSiteData['fax']);
$articleSite->setEmail($articleSiteData['email']);
$articleSite->setSubjectsNumber($articleSiteData['subjectsNumber']);
$investigatorsData = $articleSiteData['investigators'];
$investigators = $articleSite->getInvestigators();
// Remove deleted investigators
foreach ($investigators as $investigator) {
$isPresent = false;
foreach ($investigatorsData as $investigatorData) {
if (!empty($investigatorData['id'])) {
if ($investigator->getId() == $investigatorData['id']) {
$isPresent = true;
}
}
}
if (!$isPresent) {
$articleSite->removeInvestigator($investigator->getId());
}
unset($isPresent);
unset($investigator);
}
// Update / Insert Investigators
$investigatorIterator = 1;
foreach ($investigatorsData as $investigatorData) {
if (isset($investigatorData['id'])) {
$investigator = $articleSite->getInvestigator($investigatorData['id']);
} else {
$investigator = new Author();
}
if ($isExistingSite) {
$investigator->setSiteId($articleSite->getId());
}
if ($investigatorIterator == 1) {
$investigator->setPrimaryContact(1);
}
$investigator->setSequence($investigatorIterator);
$investigator->setFirstName($investigatorData['firstName']);
$investigator->setLastName($investigatorData['lastName']);
$investigator->setExpertise($investigatorData['expertise']);
$investigator->setPrimaryPhoneNumber($investigatorData['iPrimaryPhone']);
$investigator->setSecondaryPhoneNumber($investigatorData['iSecondaryPhone']);
$investigator->setFaxNumber($investigatorData['iFax']);
$investigator->setEmail($investigatorData['iEmail']);
$articleSite->addInvestigator($investigator);
$investigatorIterator++;
}
$article->addArticleSite($articleSite);
}
//update step
if ($article->getSubmissionProgress() <= $this->step) {
$article->stampStatusModified();
$article->setSubmissionProgress($this->step + 1);
} elseif ($article->getSubmissionProgress() == 9) {
$article->setSubmissionProgress(8);
}
parent::execute();
// Save the article
$articleDao->updateArticle($article);
return $this->articleId;
}
/**
* Internal function to return an articleSite object from a row.
* @param $row array
* @return articleSite ArticleSite
*/
function &_returnArticleSiteFromRow(&$row)
{
$articleSite = new ArticleSite();
$articleSite->setId($row['article_site_id']);
$articleSite->setArticleId($row['article_id']);
$articleSite->setSiteId($row['site_id']);
$articleSite->setAuthority($row['approving_authority']);
$articleSite->setERCId($row['approving_erc']);
$articleSite->setPrimaryPhone($row['primary_phone']);
$articleSite->setSecondaryPhone($row['secondary_phone']);
$articleSite->setFax($row['fax']);
$articleSite->setEmail($row['email']);
$articleSite->setSubjectsNumber($row['subjects_number']);
$articleSite->setInvestigators($this->investigatorDao->getAuthorsByArticleSite($row['article_site_id']));
HookRegistry::call('ArticleSiteDAO::_returnArticleSiteFromRow', array(&$articleSite, &$row));
return $articleSite;
}