$pdbCode = $_GET["pdbCode"];
mpLog("new-session:New session started by calling MolProbity directly with " . $pdbCode);
mpLog("browser-detect:" . $_SERVER['HTTP_USER_AGENT']);
mpLog("refered-by:" . $_SERVER['HTTP_REFERER']);
if (strlen($pdbCode) > 10) {
mpLog("bad-pdb:Invalid PDB code detected.");
$pdbCode = "";
}
$_SESSION['bgjob']['pdbCode'] = $pdbCode;
$_SESSION['bgjob']['isCnsFormat'] = false;
$_SESSION['bgjob']['ignoreSegID'] = false;
$_SESSION['bgjob']['biolunit'] = false;
$_SESSION['bgjob']['eds_2fofc'] = false;
$_SESSION['bgjob']['eds_fofc'] = false;
// launch background job
pageCall("job_progress.php");
launchBackground(MP_BASE_DIR . "/jobs/addmodel.php", "upload_pdb_done.php", 3);
} else {
mpLog("new-session:New interactive user session started on the web");
mpLog("browser-detect:" . $_SERVER['HTTP_USER_AGENT']);
mpLog("refered-by:" . $_SERVER['HTTP_REFERER']);
}
} elseif (isset($_REQUEST['eventID'])) {
$eid = $_REQUEST['eventID'] + 0;
if (isset($page['handlers'][$eid])) {
$funcName = $page['handlers'][$eid]['funcName'];
$funcArgs = $page['handlers'][$eid]['funcArgs'];
// We use a variable function name here to call the handler.
//$delegate->$funcName($funcArg, $_REQUEST);
// Now this is *real* voodoo:
call_user_func_array(array(&$delegate, $funcName), $funcArgs);
/**
* Documentation for this function.
*/
function onEditNotebook($arg)
{
pageCall("notebook_edit.php", array('entryNumber' => $arg));
}
/**
* Documentation for this function.
*/
function onRunAnalysis()
{
$req = $_REQUEST;
if ($req['cmd'] == 'Cancel') {
pageReturn();
return;
}
// Otherwise, moving forward:
if (isset($req['modelID'])) {
$_SESSION['lastUsedModelID'] = $req['modelID'];
// this is now the current model
unset($_SESSION['bgjob']);
// Clean up any old data
$_SESSION['bgjob'] = $req;
mpLog("aacgeom:Running all-atom contact and geometric analyses");
if ($req['kinClashes'] || $req['kinHbonds'] || $req['kinContacts'] || $req['chartClashlist']) {
mpLog("aacgeom-aac:Generataing all-atom contact data of some type");
}
if ($req['kinRama'] || $req['chartRama']) {
mpLog("aacgeom-rama:Doing Ramachandran analysis");
}
if ($req['kinRota'] || $req['chartRota']) {
mpLog("aacgeom-rota:Doing rotamer analysis");
}
if ($req['kinGeom'] || $req['chartGeom']) {
mpLog("aacgeom-geom:Doing geometry analysis");
}
if ($req['kinCBdev'] || $req['chartCBdev']) {
mpLog("aacgeom-cbdev:Doing C-beta deviation analysis");
}
if ($req['kinBaseP'] || $req['chartBaseP']) {
mpLog("aacgeom-basep:Validating base-phosphate distances vs sugar puckers");
}
if ($req['kinSuite'] || $req['chartSuite']) {
mpLog("aacgeom-suite:Validating RNA backbone conformations");
}
if ($req['doKinemage']) {
mpLog("aacgeom-mkin:Multi-criterion validation kinemage");
}
if ($req['doCharts']) {
mpLog("aacgeom-mchart:Multi-criterion validation chart");
}
$modelID = $_SESSION['bgjob']['modelID'];
// $model = $_SESSION['models'][$modelID];
if ($req['chartHoriz'] and !isset($_SESSION['models'][$modelID]['mtz_file'])) {
// check to see if there is one mtz. If so, then link it to the
// model being analyzed automatically
$xrayDir = $_SESSION['dataDir'] . '/' . MP_DIR_XRAYDATA;
if (file_exists($xrayDir)) {
$mtzs = array();
$handle = opendir($xrayDir);
while (false !== ($entry = readdir($handle))) {
if (substr($entry, -4) != ".mtz") {
continue;
}
$mtzs[] = $entry;
}
if (count($mtzs) == 1) {
$_SESSION['models'][$modelID]['mtz_file'] = $xrayDir . '/' . $mtzs[0];
// launch background job
pageGoto("job_progress.php");
launchBackground(MP_BASE_DIR . "/jobs/aacgeom.php", "generic_done.php", 5);
} else {
pageCall("link_model_2_mtz.php", array('modelID' => $modelID));
}
} else {
pageCall("link_model_2_mtz.php", array('modelID' => $modelID));
}
} else {
// launch background job
pageGoto("job_progress.php");
launchBackground(MP_BASE_DIR . "/jobs/aacgeom.php", "generic_done.php", 5);
}
}
}
function onVisInterface()
{
if ($_SESSION['lastUsedModelID']) {
pageCall("interface_setup2.php", array('modelID' => $_SESSION['lastUsedModelID']));
} else {
pageCall("interface_setup1.php");
}
}
/**
* $arg is the name of the page to call.
*/
function onCall($page, $ctx = null)
{
pageCall($page, $ctx);
}
