if ($subjects != '') {
d($vals_array);
}
$timer['start_main'] = microtime(true);
/**
* Main loop
*/
foreach ($vals_array as $subj_usubjid => $subj_val_array) {
$seq = 1;
$constants['USUBJID'] = $constants['STUDYID'] . '-' . $subj_usubjid;
foreach ($subj_val_array AS $subj_array) {
if ($subj_array['mhoccur'] != '') {
$llt = $subj_array['mhmodify'] != '' ? $subj_array['mhmodify'] : get_llt($subj_array['mhterm']);
$pt = get_pt($llt);
$soc = get_bodsys($pt);
$query[] = '(' .
fix_null($constants['STUDYID']) . ',' .
fix_null($constants['DOMAIN']) . ',' .
fix_null($constants['USUBJID']) . ',' .
fix_null($seq) . ',' .
fix_null($subj_array['mhterm']) . ',' .
fix_null($llt) . ',' .
fix_null($pt) . ',' .
fix_null($soc) . ',' .
fix_null($subj_array['mhoccur']) . ',' .
fix_null($subj_array['mhpresp']) . ',' .
fix_null($subj_array['mhstdtc']) . ',' .
fix_null($subj_array['mhstdtc']) .
')';
$seq++;
/**
* @param string $project_id
* @param string $subject_id
* @param string $event_id
* @param string $cmdecod
* @param string $atc_name
* @param string $atc2_name
* @param bool $recode
* @param bool $debug
*/
function code_atc_soc($project_id, $subject_id, $event_id, $cmdecod, $atc_name, $atc2_name, $debug, $recode = false, $message)
{
/**
* CM_SUPPCM_ATCNAME
* CM_SUPPCM_ATC2NAME
* queries to find ATC name for conmed
*/
if (isset($cmdecod) && $cmdecod != '') {
/**
* get indcd -> soc for mapping soc to atc
*/
$soc = get_bodsys(get_single_field($subject_id, $project_id, $event_id, 'cm_suppcm_indcod', ''));
$map_result = db_query("SELECT atc_code, atc_code_alt FROM _target_map_soc_atc WHERE soc = '$soc'");
if ($map_result) {
$atc_code = db_result($map_result, 0, 'atc_code');
$atc_code_alt = db_result($map_result, 0, 'atc_code_alt');
if ($debug) {
/*error_log("DEBUG: " . $atc_code);
error_log("DEBUG: " . $atc_code_alt);*/
}
db_free_result($map_result);
}
$atc_query = "SELECT DISTINCT atc.atc_name, atc1.atc_name AS atc2_name FROM
(SELECT drug_name, drug_rec_num FROM _whodrug_mp_us) drug
LEFT JOIN
(SELECT drug_rec_num, atc_code FROM _whodrug_dda_target) mp_atc ON TRIM(LEADING '0' FROM drug.drug_rec_num) = mp_atc.drug_rec_num
LEFT JOIN
(SELECT atc_code, atc_name FROM _whodrug_atc) atc ON SUBSTRING(mp_atc.atc_code,1,1) = atc.atc_code
LEFT JOIN
(SELECT atc_code, atc_name FROM _whodrug_atc) atc1 ON SUBSTRING(mp_atc.atc_code,1,3) = atc1.atc_code";
$atc_query .= " WHERE drug.drug_name = '" . prep($cmdecod) . "' AND ";
if (isset($atc_code) && $atc_code !== false) {
$atc_query .= "(atc.atc_code = '" . $atc_code . "'";
if (isset($atc_code_alt) && $atc_code_alt != '') {
$atc_query .= " OR atc.atc_code = '" . $atc_code_alt . "'";
}
$atc_query .= ") AND ";
}
$atc_query .= "atc.atc_name IS NOT NULL LIMIT 1";
if ($debug) {
//error_log("DEBUG: " . $atc_query);
}
$atcname_result = db_query($atc_query);
if ($atcname_result) {
while ($atcname = db_fetch_assoc($atcname_result)) {
/**
* if we have atc and atc2, push to redcap
*/
if ($recode) {
if (isset($atcname['atc_name']) && $atcname['atc_name'] != '') {
update_field_compare($subject_id, $project_id, $event_id, $atcname['atc_name'], $atc_name, 'cm_suppcm_atcname', $debug, $message);
}
if (isset($atcname['atc2_name']) && $atcname['atc2_name'] != '') {
update_field_compare($subject_id, $project_id, $event_id, $atcname['atc2_name'], $atc2_name, 'cm_suppcm_atc2name', $debug, $message);
}
} else {
if ($atc_name == '' && isset($atcname['atc_name']) && $atcname['atc_name'] != '') {
update_field_compare($subject_id, $project_id, $event_id, $atcname['atc_name'], $atc_name, 'cm_suppcm_atcname', $debug, $message);
}
if ($atc2_name == '' && isset($atcname['atc2_name']) && $atcname['atc2_name'] != '') {
update_field_compare($subject_id, $project_id, $event_id, $atcname['atc2_name'], $atc2_name, 'cm_suppcm_atc2name', $debug, $message);
}
}
}
db_free_result($atcname_result);
}
/**
* if we didn't find one that maps to soc, be more generic
*/
$check_atc = get_single_field($subject_id, $project_id, $event_id, 'cm_suppcm_atcname', '');
if (!isset($check_atc) || $check_atc == '') {
$atc_query = "SELECT DISTINCT atc.atc_name, atc1.atc_name AS atc2_name FROM
(SELECT drug_name, drug_rec_num FROM _whodrug_mp_us) drug
LEFT JOIN
(SELECT drug_rec_num, atc_code FROM _whodrug_dda_target) mp_atc ON TRIM(LEADING '0' FROM drug.drug_rec_num) = mp_atc.drug_rec_num
LEFT JOIN
(SELECT atc_code, atc_name FROM _whodrug_atc) atc ON SUBSTRING(mp_atc.atc_code,1,1) = atc.atc_code
LEFT JOIN
(SELECT atc_code, atc_name FROM _whodrug_atc) atc1 ON SUBSTRING(mp_atc.atc_code,1,3) = atc1.atc_code";
$atcname_result = db_query($atc_query . " WHERE drug.drug_name = '" . prep($cmdecod) . "' AND atc.atc_name IS NOT NULL LIMIT 1");
if ($atcname_result) {
/**
* we don't want more than one result here
*/
while ($atcname = db_fetch_assoc($atcname_result)) {
/**
* if we have atc and atc2, push to redcap
*/
if ($recode) {
if (isset($atcname['atc_name']) && $atcname['atc_name'] != '') {
update_field_compare($subject_id, $project_id, $event_id, $atcname['atc_name'], $atc_name, 'cm_suppcm_atcname', $debug, $message);
}
if (isset($atcname['atc2_name']) && $atcname['atc2_name'] != '') {
update_field_compare($subject_id, $project_id, $event_id, $atcname['atc2_name'], $atc2_name, 'cm_suppcm_atc2name', $debug, $message);
}
} else {
if ($atc_name == '' && isset($atcname['atc_name']) && $atcname['atc_name'] != '') {
update_field_compare($subject_id, $project_id, $event_id, $atcname['atc_name'], $atc_name, 'cm_suppcm_atcname', $debug, $message);
}
if ($atc2_name == '' && isset($atcname['atc2_name']) && $atcname['atc2_name'] != '') {
update_field_compare($subject_id, $project_id, $event_id, $atcname['atc2_name'], $atc2_name, 'cm_suppcm_atc2name', $debug, $message);
}
}
}
db_free_result($atcname_result);
}
}
/**
* in case whodrug doesn't know about your conmed, code from alt table
*/
$check_atc = get_single_field($subject_id, $project_id, $event_id, 'cm_suppcm_atcname', '');
if (!isset($check_atc) || $check_atc == '') {
$atc_alt_query = "SELECT DISTINCT atc.atc_name, atc1.atc_name AS atc2_name FROM
(SELECT * FROM _whodrug_dda_alt) mp_atc
LEFT JOIN
(SELECT atc_code, atc_name FROM _whodrug_atc) atc ON SUBSTRING(mp_atc.atc_code,1,1) = atc.atc_code
LEFT JOIN
(SELECT atc_code, atc_name FROM _whodrug_atc) atc1 ON SUBSTRING(mp_atc.atc_code,1,3) = atc1.atc_code";
$atcname_alt_result = db_query($atc_alt_query . " WHERE mp_atc.drug_name = '" . prep($cmdecod) . "' LIMIT 1");
if ($atcname_alt_result) {
/**
* we don't want more than one result here
*/
while ($atcname_alt = db_fetch_assoc($atcname_alt_result)) {
/**
* if we have atc and atc2, push to redcap
*/
if ($recode) {
if (isset($atcname_alt['atc_name']) && $atcname_alt['atc_name'] != '') {
update_field_compare($subject_id, $project_id, $event_id, $atcname_alt['atc_name'], $atc_name, 'cm_suppcm_atcname', $debug, $message);
}
if (isset($atcname_alt['atc2_name']) && $atcname_alt['atc2_name'] != '') {
update_field_compare($subject_id, $project_id, $event_id, $atcname_alt['atc2_name'], $atc2_name, 'cm_suppcm_atc2name', $debug, $message);
}
} else {
if ($atc_name == '' && isset($atcname_alt['atc_name']) && $atcname_alt['atc_name'] != '') {
update_field_compare($subject_id, $project_id, $event_id, $atcname_alt['atc_name'], $atc_name, 'cm_suppcm_atcname', $debug, $message);
}
if ($atc2_name == '' && isset($atcname_alt['atc2_name']) && $atcname_alt['atc2_name'] != '') {
update_field_compare($subject_id, $project_id, $event_id, $atcname_alt['atc2_name'], $atc2_name, 'cm_suppcm_atc2name', $debug, $message);
}
}
}
db_free_result($atcname_alt_result);
}
}
} else {
update_field_compare($subject_id, $project_id, $event_id, '', $atc_name, 'cm_suppcm_atcname', $debug, $message);
update_field_compare($subject_id, $project_id, $event_id, '', $atc2_name, 'cm_suppcm_atc2name', $debug, $message);
}
}
