/**
* Remove country
*
* @param \Proethos2\ModelBundle\Entity\SubmissionCountry $country
*/
public function removeCountry(\Proethos2\ModelBundle\Entity\SubmissionCountry $country)
{
$this->country->removeElement($country);
}
/**
* @Route("/submission/new/{submission_id}/third", name="submission_new_third_step")
* @Template()
*/
public function ThirdStepAction($submission_id)
{
$output = array();
$request = $this->getRequest();
$session = $request->getSession();
$translator = $this->get('translator');
$em = $this->getDoctrine()->getManager();
$submission_repository = $em->getRepository('Proethos2ModelBundle:Submission');
$user_repository = $em->getRepository('Proethos2ModelBundle:User');
$submission_country_repository = $em->getRepository('Proethos2ModelBundle:SubmissionCountry');
$gender_repository = $em->getRepository('Proethos2ModelBundle:Gender');
$recruitment_status_repository = $em->getRepository('Proethos2ModelBundle:RecruitmentStatus');
$country_repository = $em->getRepository('Proethos2ModelBundle:Country');
// getting the current submission
$submission = $submission_repository->find($submission_id);
$output['submission'] = $submission;
// getting gender list
$genders = $gender_repository->findByStatus(true);
$output['genders'] = $genders;
// getting recruitment_statuses list
$recruitment_statuses = $recruitment_status_repository->findByStatus(true);
$output['recruitment_statuses'] = $recruitment_statuses;
$countries = $country_repository->findBy(array(), array('name' => 'asc'));
$output['countries'] = $countries;
if (!$submission or $submission->getIsSended()) {
throw $this->createNotFoundException($translator->trans('No submission found'));
}
$allow_to_edit_submission = true;
$user = $this->get('security.token_storage')->getToken()->getUser();
// if current user is not owner, check the team
if ($user != $submission->getOwner()) {
$allow_to_edit_submission = false;
foreach ($submission->getTeam() as $team_member) {
// if current user = some team member, than it allows to edit
if ($user == $team_member) {
$allow_to_edit_submission = true;
}
}
}
if (!$allow_to_edit_submission) {
throw $this->createNotFoundException($translator->trans('No submission found'));
}
// checking if was a post request
if ($this->getRequest()->isMethod('POST')) {
// getting post data
$post_data = $request->request->all();
// checking required files
$required_fields = array('study-design', 'gender', 'sample-size', 'minimum-age', 'maximum-age', 'inclusion-criteria', 'exclusion-criteria', 'recruitment-init-date', 'recruitment-status', 'interventions', 'primary-outcome');
foreach ($required_fields as $field) {
if (!isset($post_data[$field]) or empty($post_data[$field])) {
$session->getFlashBag()->add('error', $translator->trans("Field '%field%' is required.", array("%field%" => $field)));
return $output;
}
}
$recruitment_init_date = new \DateTime($post_data['recruitment-init-date']);
if (new \DateTime('NOW') > $recruitment_init_date) {
$session->getFlashBag()->add('error', $translator->trans("The recruitment start date has to be subsequent to the date of protocol submission."));
return $output;
}
// adding fields to model
$submission->setStudyDesign($post_data['study-design']);
$submission->setHealthCondition($post_data['health-condition']);
$submission->setSampleSize($post_data['sample-size']);
$submission->setMinimumAge($post_data['minimum-age']);
$submission->setMaximumAge($post_data['maximum-age']);
$submission->setInclusionCriteria($post_data['inclusion-criteria']);
$submission->setExclusionCriteria($post_data['exclusion-criteria']);
$submission->setRecruitmentInitDate(new \DateTime($post_data['recruitment-init-date']));
// gender
$selected_gender = $gender_repository->find($post_data['gender']);
$submission->setGender($selected_gender);
// recruitment status
$selected_recruitment_status = $recruitment_status_repository->find($post_data['recruitment-status']);
$submission->setRecruitmentStatus($selected_recruitment_status);
// removing all team to readd
foreach ($submission->getCountry() as $country) {
$submission->removeCountry($country);
$em->remove($country);
$em->flush();
}
if (isset($post_data['country'])) {
foreach ($post_data['country'] as $key => $country) {
$country_obj = $country_repository->find($country['country_id']);
// check if exists
$submission_country = $submission_country_repository->findOneBy(array('submission' => $submission, 'country' => $country_obj));
// var_dump($post_data);die;
// if not exists, create the new submission_country
if (!$submission_country) {
$submission_country = new SubmissionCountry();
$submission_country->setSubmission($submission);
$submission_country->setCountry($country_obj);
$submission_country->setParticipants($country['participants']);
} else {
$submission_country->setParticipants($country['participants']);
}
$em = $this->getDoctrine()->getManager();
$em->persist($submission_country);
$em->flush();
// add in submission
$submission->addCountry($submission_country);
}
}
$submission->setInterventions($post_data['interventions']);
$submission->setPrimaryOutcome($post_data['primary-outcome']);
$submission->setSecondaryOutcome($post_data['secondary-outcome']);
$submission->setGeneralProcedures($post_data['general-procedures']);
$submission->setAnalysisPlan($post_data['analysis-plan']);
$submission->setEthicalConsiderations($post_data['ethical-considerations']);
$em = $this->getDoctrine()->getManager();
$em->persist($submission);
$em->flush();
$session->getFlashBag()->add('success', $translator->trans("Third step saved with sucess."));
return $this->redirectToRoute('submission_new_fourth_step', array('submission_id' => $submission->getId()), 301);
}
return $output;
}