public function actionNdff()
{
echo "=== Starting export sequence at " . date("d-m-Y h:i") . " ===\r\n";
echo "Fetching all records from the 'observations' table where ndff_id is empty or ndiff_failed is filled\r\n";
$observations = Observations::find()->where(['or', ['is', 'ndff_id', NULL], ['not', ['ndff_failed' => NULL]]]);
echo "Found " . $observations->count() . " records, continuing\r\n";
echo "Looping trough all the results\r\n";
foreach ($observations->all() as $observation) {
if ($observation->observation_method == Observations::OBSERVATION_TYPE_NULL) {
continue;
}
$ndffObservation = new \NDFF\Observation();
$ndffObservation->setLifestage('http://ndff-ecogrid.nl/codes/domainvalues/observation/lifestages/unknown');
$ndffObservation->setLocation(0, '', 'http://ndff-ecogrid.nl/codes/locationtypes/point');
$ndffObservation->setPeriodstart(date('o-m-d\\TH:i:s', strtotime($observation->visit->date)));
$ndffObservation->setScaleidentity('http://ndff-ecogrid.nl/codes/scales/exact_count');
if ($observation->catch_sex != Observations::CATCH_SEX_UNKNOWN) {
$sexUrlParameter = $observation->catch_sex == Observations::CATCH_SEX_MALE ? 'male' : 'female';
$ndffObservation->setSex('http://ndff-ecogrid.nl/codes/domainvalues/observation/sexes/' . $sexUrlParameter);
}
$ndffObservation->setSubjecttypeidentity('http://ndff-ecogrid.nl/codes/subjecttypes/live/individual');
echo "Attempting to write observation " . $observation->id . " to NDFF database\r\n";
$ndffRequest = new \NDFF\ApiRequest('telmee', 'onsjos', '********');
$ndffRequest->set_request_data($ndffObservation);
$ndffRequest->resource_post('observation');
}
echo "All done!\r\n";
}
public function actionDetail($id)
{
$visit = Visits::findOne($id);
if (!is_object($visit) || !$visit->isAuthorized()) {
return $this->redirect(Url::toRoute('visits/index'));
}
return $this->render('detail', ['visit' => $visit, 'observations' => Observations::find()->all()]);
}
public function actionForm($id = NULL)
{
$model = $id ? Observations::findOne($id) : new Observations();
if (Yii::$app->getRequest()->getQueryParam('visit_id') && is_null($id)) {
$model->visit_id = Yii::$app->getRequest()->getQueryParam('visit_id');
}
if ($model->load(Yii::$app->request->post())) {
/* Load picture file */
$model->pictureFile = UploadedFile::getInstance($model, 'pictureFile');
/* Validate model */
if ($model->validate()) {
/* Upload picture */
if ($model->pictureFile) {
$model->upload();
}
/* Delete picture if selected */
if ($model->deleteImage && !$model->pictureFile) {
$model->picture = NULL;
}
/* Check for auto-validation on observqation */
if (Yii::$app->user->getIdentity()->hasRole(['validator', 'administrator'])) {
$model->markAsValidated();
}
/* When the observation type equals a null-observation, clear all other fields */
if ($model->observation_type == Observations::OBSERVATION_TYPE_NULL) {
foreach ($model->attributes as $attribute => $value) {
if (!in_array($attribute, ['id', 'visit_id', 'observation_type', 'validated_by_id', 'validated_date', 'box_id', 'date_created', 'date_updated', 'deleted'])) {
$model->{$attribute} = NULL;
}
}
}
$model->save(false);
if ($model->observation_type != Observations::OBSERVATION_TYPE_NULL && Observations::find()->where(['and', ['deleted' => false], ['box_id' => $model->box_id], ['observation_type' => Observations::OBSERVATION_TYPE_NULL]])->exists()) {
foreach (Observations::find()->where(['and', ['deleted' => false], ['observation_type' => Observations::OBSERVATION_TYPE_NULL], ['box_id' => $model->box_id]])->all() as $nullObservation) {
$nullObservation->delete();
}
}
return $this->redirect(Url::toRoute(['visits/detail/' . $model->visit_id]));
}
}
return $this->render('form', ['model' => $model, 'boxes' => Boxes::find()->where(['project_id' => Visits::findOne($model->visit_id)->project_id])->all(), 'species' => Species::find()->asArray()->all(), 'parasites' => Species::find()->where(['taxon' => Species::TAXONOMY_ARTHROPOD])->all()]);
}
public function search($params, $personal = false)
{
/* User identifier */
$userIdentifier = \Yii::$app->user->getId() ? \Yii::$app->user->getId() : 0;
/* Base query */
$query = Observations::find();
/* Joins */
$query->join('LEFT JOIN', 'boxes', '"observations"."box_id" = "boxes"."id" AND "boxes"."deleted" = FALSE');
$query->join('LEFT JOIN', 'visits', '"observations"."visit_id" = "visits"."id" AND "visits"."deleted" = FALSE');
$query->join('LEFT JOIN', 'projects', '"boxes"."project_id" = "projects"."id" AND "projects"."deleted" = FALSE');
$query->join('LEFT JOIN', 'project_counters', '"projects"."id" = "project_counters"."project_id" AND "project_counters"."user_id" = :user_id', ['user_id' => $userIdentifier]);
/* Conditions */
$query->where(['and', ['observations.deleted' => false], ['not', ['visits.id' => NULL]], ['not', ['boxes.id' => NULL]], ['not', ['projects.id' => NULL]], ['or', ['is', '"visits"."embargo"', NULL], ['<=', '"visits"."embargo"', 'NOW()'], ['in', 'visit_id', (new Query())->select('id')->from(VisitObservers::tableName())->where(['observer_id' => $userIdentifier])]], ['<>', 'observations.observation_type', Observations::OBSERVATION_TYPE_NULL]]);
if (!is_object(Yii::$app->user->getIdentity()) || is_object(Yii::$app->user->getIdentity()) && !Yii::$app->user->getIdentity()->hasRole(['validator', 'administrator'])) {
$query->andWhere(['or', ['"projects"."owner_id"' => $userIdentifier], ['"projects"."main_observer_id"' => $userIdentifier], ['or', ['is', '"projects"."embargo"', NULL], ['<=', '"projects"."embargo"', 'NOW()']], ['is not', '"project_counters"."user_id"', NULL]]);
}
$query->andWhere(['and', ['"projects"."deleted"' => false], ['"boxes"."deleted"' => false], ['"visits"."deleted"' => false], ['"observations"."deleted"' => false]]);
$dataProvider = new ActiveDataProvider(['query' => $query]);
$this->load($params);
return $dataProvider;
}
public static function hasNotNullObservations($visit_id, $observation_id = NULL)
{
return Observations::find()->where(['and', ['visit_id' => $visit_id], ['<>', 'observation_type', Observations::OBSERVATION_TYPE_NULL], ['<>', 'id', $observation_id], ['deleted' => false]])->exists() ? true : false;
}
<?php
use fedemotta\datatables\DataTables;
use yii\helpers\Url;
use yii\helpers\Html;
use app\models\Visits;
use app\models\Observations;
use app\models\Boxtypes;
use app\models\ProjectClusters;
?>
<div class="table-responsive">
<?php
echo DataTables::widget(['dataProvider' => $dataProvider, 'filterModel' => $searchModel, 'columns' => [['attribute' => 'code', 'format' => 'html', 'value' => function ($model, $key, $index, $column) {
return Html::a($model['code'], Url::toRoute('boxes/detail/' . $model['id']));
}], ['attribute' => 'boxtype_id', 'format' => 'html', 'label' => 'Boxtype', 'value' => function ($model, $key, $index, $column) {
$boxType = $model['boxtype_id'] ? Boxtypes::findOne($model['boxtype_id']) : NULL;
return $boxType ? Html::a($boxType->model, Url::toRoute('boxtypes/detail/' . $boxType->id)) : "-";
}], ['attribute' => 'cluster_id', 'format' => 'html', 'label' => 'Cluster', 'value' => function ($model, $key, $index, $column) {
$cluster = $model['cluster_id'] ? ProjectClusters::findOne($model['cluster_id']) : NULL;
return $cluster ? $cluster->cluster : '-';
}], ['attribute' => 'placement_date', 'label' => Yii::t('app', 'Plaatsingsdatum')], ['label' => Yii::t('app', 'Laatste waarneming'), 'value' => function ($model, $key, $index, $column) {
if (($observationModel = Observations::find()->byBox($model['id'])->one()) !== NULL) {
return Visits::findOne($observationModel->visit_id)->date;
} else {
return "-";
}
}]], 'clientOptions' => ['info' => false, 'responsive' => true, 'dom' => 'lfTrtip', 'tableTools' => ['aButtons' => [['sExtends' => 'copy', 'sButtonText' => Yii::t('app', 'Copy to clipboard')], ['sExtends' => 'csv', 'sButtonText' => Yii::t('app', 'Save to CSV')], ['sExtends' => 'pdf', 'sButtonText' => Yii::t('app', 'Save to PDF')], ['sExtends' => 'print', 'sButtonText' => Yii::t('app', 'Print')]]]]]);
?>
</div>
