/**
* {@inheritdoc}
*/
private function buildQuery(PrototypeInterface $prototype)
{
/**
* Need to get all hmtb id's that are stored locally.
*/
$hmtbFieldId = $prototype->getFieldByName('hmtb-id')->getId();
$sql = "SELECT v.stringValue\n FROM accard_sample_proto_fldval AS v\n LEFT JOIN accard_sample AS a ON (v.sampleId = a.id)\n WHERE v.fieldId IN (%s)";
return sprintf($sql, $hmtbFieldId);
}
/**
* Prepare Local Results
*/
private function prepareResults(array $results, PrototypeInterface $prototype)
{
$localResults = array();
foreach ($results as $key => $result) {
$result = array_change_key_case($result, CASE_LOWER);
$sampleId = $result['sampleid'];
$fieldId = $result['fieldid'];
if (!isset($localResults[$sampleId])) {
$localResults[$sampleId] = array();
}
$localResults[$sampleId][$fieldId] = $result['stringvalue'];
unset($results[$key]);
}
unset($results);
$fields = array($prototype->getFieldByName('genetic-results-cpd-id'), $prototype->getFieldByName('genetic-results-gene-id'), $prototype->getFieldByName('genetic-results-transcript-id'), $prototype->getFieldByName('genetic-results-position'), $prototype->getFieldByName('genetic-results-genotype'), $prototype->getFieldByName('genetic-results-fdp'), $prototype->getFieldByName('genetic-results-frd'), $prototype->getFieldByName('genetic-results-fad'), $prototype->getFieldByName('genetic-results-faf'));
// Turn this into an array like;
// array('MyConcatIdForComparison', 'SomeOtherCocatenation');
$concatenatedLocalRecords = $this->compileLocalRecords($localResults, $fields);
return $concatenatedLocalRecords;
}
