function change_roi_type($roi_pid, $roi_type)
{
if ($roi_type == "Annotation") {
$roi_type = "Annotation/Other";
}
$roi = new roiHandler($roi_pid);
$roiMetadata = $roi->getDatastream("roiMetadata");
$dom = new DOMDocument();
$dom->loadXML($roiMetadata);
$dom->getElementsByTagName("roiType")->item(0)->nodeValue = $roi_type;
$result = $roi->setDatastream("roiMetadata", "roi_Metadata", "text/xml", $dom->saveXML(), FEDORA_DATABASE_USERNAME . ":" . FEDORA_DATABASE_PASSWORD);
if ($result) {
echo "Success";
} else {
echo "Failed";
}
}
function save_parsed_text($roi_pid, $nothing, $workflow_id)
{
global $user;
$returnjs = "";
if (Workflow_Users::doesWorkflowHaveUserName($workflow_id, $user->name) && Workflow_Permission::doesWorkflowHavePermission($workflow_id, "canTranscribe")) {
$query_string = $_SERVER['QUERY_STRING'];
log_to_db($_SERVER['QUERY_STRING'], 'save_parsed_text QUERY_STRING');
log_to_db($_REQUEST['specimenMetadata'], 'save_parsed_text specimenMetadata');
$specimenMetadata = $_REQUEST['specimenMetadata'];
$file_path = drupal_get_path('module', 'apiary_project') . "/workflow/assets/xml/metadata_template.xml";
$doc = new DOMDocument();
$doc->load($file_path);
$pairs = explode('&', $specimenMetadata);
foreach ($pairs as $pair) {
if (!empty($pair)) {
list($name, $value) = explode("=", $pair, 2);
if ($name != "q") {
$element = $doc->getElementsByTagName($name)->item(0);
$element->nodeValue = urldecode($value);
}
}
}
$roi_obj = new roiHandler($roi_pid);
log_to_db($doc->saveXML(), 'save_parsed_text doc_saveXML');
$success = $roi_obj->setDatastream("specimenMetadata", "Label-Information", "text/xml", $doc->saveXML(), FEDORA_DATABASE_USERNAME . ":" . FEDORA_DATABASE_PASSWORD);
log_to_db($_REQUEST['text'], 'save_parsed_text text');
$success = $roi_obj->setDatastream("Text", "Parsed", "text/plain", $_POST['text'], FEDORA_DATABASE_USERNAME . ":" . FEDORA_DATABASE_PASSWORD);
if ($success) {
$solr_search = new search();
$solr_search->index($roi_pid);
$returnjs .= "\$.jGrowl('Parsed text for ROI [{$roi_pid}] saved successfully.');";
} else {
$returnjs .= "\$.jGrowl('Parsed text for ROI [{$roi_pid}] failed to save.');";
}
} else {
$returnjs .= "\$.jGrowl('Sorry! You do not have permission for this operation');";
}
echo $returnjs;
}
function save_transcribe_text($roi_pid, $nothing, $workflow_id)
{
global $user;
$returnjs = "";
if (Workflow_Users::doesWorkflowHaveUserName($workflow_id, $user->name) && Workflow_Permission::doesWorkflowHavePermission($workflow_id, "canTranscribe")) {
$roi_obj = new roiHandler($roi_pid);
$text = $_REQUEST['text'];
$text = str_replace(' ', ' ', $text);
$success = $roi_obj->setDatastream("Text", "Transcribed", "text/plain", $text, FEDORA_DATABASE_USERNAME . ":" . FEDORA_DATABASE_PASSWORD);
if ($success) {
$returnjs .= "\$.jGrowl('Trascribed Text for ROI [{$roi_pid}] saved successfully.');";
} else {
$returnjs .= "\$.jGrowl('Trascribed Text for ROI [{$roi_pid}] failed to save.');";
}
} else {
$returnjs .= "\$.jGrowl('Sorry! You do not have permission for this operation');";
}
echo $returnjs;
}
function saveSpecimenGroundtruth($specimen_pid, $groundtruth_dom)
{
$roi_obj = new roiHandler($specimen_pid);
$result = $roi_obj->setDatastream("groundtruth", "Specimen+Ground+Truth", "text/xml", $groundtruth_dom->saveXML(), FEDORA_DATABASE_USERNAME . ":" . FEDORA_DATABASE_PASSWORD);
if ($result) {
return true;
} else {
return false;
}
}
