public static function update_concept($taxon_concept_id) { if (!$taxon_concept_id || !is_numeric($taxon_concept_id)) { echo "\n\n\t#update_concept([taxon_concept_id])\n\n"; return false; } $taxon_concept = TaxonConcept::find($taxon_concept_id); Tasks::update_taxon_concept_names($taxon_concept_id); $he = new FlattenHierarchies(); $he->flatten_hierarchies_from_concept_id($taxon_concept_id); // make sure hierarchy info is up-to-date TaxonConcept::reindex_descendants_objects($taxon_concept_id); // make sure objects are indexed for display TaxonConcept::reindex_for_search($taxon_concept_id); // make sure objects are indexed for search }
public static function move_entry($args) { $taxon_concept_id_from = @$args['taxon_concept_id_from']; $hierarchy_entry_id = @$args['hierarchy_entry_id']; $taxon_concept_id_to = @$args['taxon_concept_id_to']; $bad_match_hierarchy_entry_id = @$args['bad_match_hierarchy_entry_id']; $confirmation = @$args['confirmed']; if (!$taxon_concept_id_from || !is_numeric($taxon_concept_id_from) || !$hierarchy_entry_id || !is_numeric($hierarchy_entry_id) || !$taxon_concept_id_to || !is_numeric($taxon_concept_id_to) || !$bad_match_hierarchy_entry_id || !is_numeric($bad_match_hierarchy_entry_id)) { throw new \Exception("split_concept.php [taxon_concept_id_from] [hierarchy_entry_id] [taxon_concept_id_to] [bad_match_hierarchy_entry_id] [confirmed] [reindex?]"); } \CodeBridge::print_message("Moving HE# {$hierarchy_entry_id} from TC# {$taxon_concept_id_from} to TC# " . "{$taxon_concept_id_to} avoiding HE# {$bad_match_hierarchy_entry_id}"); $tc_from = TaxonConcept::find($taxon_concept_id_from); $tc_to = TaxonConcept::find($taxon_concept_id_to); $he = HierarchyEntry::find($hierarchy_entry_id); $bad_he = HierarchyEntry::find($bad_match_hierarchy_entry_id); if (!$he->id || !$tc_from->id || !$tc_to->id || !$bad_he->id) { throw new \Exception("Invalid ID"); } if ($he->taxon_concept_id != $tc_from->id) { throw new \Exception("This entry is not in the source concept"); } if ($he->taxon_concept_id != $bad_he->taxon_concept_id) { throw new \Exception("The bad match ID isn't from the same concept"); } if ($confirmation == 'confirmed' || $confirmation == 'force') { if ($confirmation == 'force') { $force_move_if_disallowed = true; } else { $force_move_if_disallowed = false; } $user_id = 13; # 13 is Patrick's user ID // TODO Need to look through all the HEs in the TC we're moving *to* and cycle through them to make sure none of // them are blocking the move: foreach ($tc_to->hierarchy_entries as $tc_he) { $GLOBALS['db_connection']->query("DELETE FROM curated_hierarchy_entry_relationships\n WHERE hierarchy_entry_id_1={$hierarchy_entry_id} AND hierarchy_entry_id_2=" . $tc_he->id . " AND equivalent=0"); } $moved = HierarchyEntry::move_to_concept_static($hierarchy_entry_id, $taxon_concept_id_to, $force_move_if_disallowed, true); if (!$moved) { \CodeBridge::print_message("NOT ALLOWED: throwing exception"); throw new \Exception("This move is not allowed; it would affect other hierarchies"); } $GLOBALS['db_connection']->query("INSERT IGNORE INTO curated_hierarchy_entry_relationships VALUES ({$hierarchy_entry_id}, {$bad_match_hierarchy_entry_id}, {$user_id}, 0)"); \CodeBridge::print_message("Done. Moved {$hierarchy_entry_id} to {$taxon_concept_id_to}"); } else { echo "\n\nRemoving:\n"; print_r($he); echo "Name: " . $he->name->string . "\n\nFrom:\n"; print_r($tc_from); echo "To:\n"; print_r($tc_to); $descendant_objects = TaxonConcept::count_descendants_objects($tc_from->id); $descendants = TaxonConcept::count_descendants($tc_from->id); echo "\n\nTaxonConcept1: {$tc_from->id}\n"; echo "Descendant Objects: {$descendant_objects}\n"; echo "Descendant Concepts: {$descendants}\n"; $descendant_objects = TaxonConcept::count_descendants_objects($tc_to->id); $descendants = TaxonConcept::count_descendants($tc_to->id); echo "\n\nTaxonConcept1: {$tc_to->id}\n"; echo "Descendant Objects: {$descendant_objects}\n"; echo "Descendant Concepts: {$descendants}\n"; echo "\n\nDon't forget to solr_update_concept.php\n\n"; } }