function component_row(Package $package, $indentation, TableCreator $table_creator)
{
$ret = $table_creator->row(array($package->full_name(), $package->afferente(), $package->efferente(), round($package->instability(), 2)));
$nested = $package->with('packages')->packages;
foreach ($nested as $nuc) {
$ret .= component_row($nuc, $indentation + 1, $table_creator);
}
return $ret;
}
function component_row(Package $package, $indentation, TableCreator $table_creator)
{
$package->with('integration');
$ret = $table_creator->row(array($package->full_name(), $package->integration == null ? 'Architettura del sistema' : $package->integration->public_id()));
$nested = $package->with('packages')->packages;
foreach ($nested as $nuc) {
$ret .= component_row($nuc, $indentation + 1, $table_creator);
}
return $ret;
}
function test_row(ValidationTest $test, $indentation, TableCreator $table_creator)
{
$test->with('test', 'requirement', 'children');
$ret = "";
$ret .= $table_creator->row(array($table_creator->child_indentation($indentation), $test->public_id(), $test->test->description, $test->requirement == null ? '' : $test->requirement->public_id(), 'success'));
$nested = $test->children;
foreach ($nested as $c) {
$ret .= test_row($c, $indentation + 1, $table_creator);
}
return $ret;
}
function req_row(Requirement $req, $indentation, TableCreator $table_creator)
{
$req->with('validationTest', 'requirements');
$ret = "";
$ret .= $table_creator->row(array($table_creator->child_indentation($indentation), $req->public_id(), $req->validationTest == null ? '' : $req->validationTest->public_id()));
$nested = $req->requirements;
foreach ($nested as $c) {
$ret .= req_row($c, $indentation + 1, $table_creator);
}
return $ret;
}
function test_row(TUnitTest $test, TableCreator $table_creator)
{
$methods = array();
foreach ($test->methods as $meth) {
$methods[] = $meth->name . "()";
}
if (!empty($methods)) {
return $table_creator->row(array($test->public_id(), $test->description, implode($methods, "\n\n"), 'Success'));
}
return '';
}
function class_row(Class_Prog $class, TableCreator $table_creator)
{
$ret = "";
$pkg_name = array();
foreach ($class->requirements as $c) {
array_push($pkg_name, $c->public_id());
}
array_unique($pkg_name);
sort($pkg_name);
$cells = array($table_creator->anchor($class->full_name(), $class->name), implode("\n\n", $pkg_name));
$ret .= $table_creator->row($cells);
return $ret;
}
function test_row(Requirement $req, $indentation, TableCreator $table_creator, $filter_cat, $filter_pri)
{
$test = $req->with('system_test')->system_test;
$ret = "";
if (isset($req->system_test) && (!is_numeric($filter_cat) || $req->category == $filter_cat) && (!is_numeric($filter_pri) || $req->priority == $filter_pri)) {
$test->with('test');
$ret .= $table_creator->row(array($test->public_id(), $test->test->description, 'success', $table_creator->anchor($req->public_id(), $req->public_id())));
}
$nested = $req->with('requirements')->requirements;
foreach ($nested as $nreq) {
$ret .= test_row($nreq, $indentation + 1, $table_creator, $filter_cat, $filter_pri);
}
return $ret;
}
function install()
{
switch ($this->step) {
case 1:
if ($this->installFormVarsSet() && $this->connect()) {
// Ready to create tables
$tc = new TableCreator($this->connector->getConnection());
$tablesOk = $tc->createAll();
} else {
// vars not yet set
// Don't go to step 2 yet.
}
break;
}
}
static function performDNARNAFilter($con, $previousTable, $currentTable, $args)
{
if ($args == null || count($args) == 0) {
return;
} else {
if (count($args) != 2) {
REDLog::writeErrLog("Args for DNA-RNA Filter are incomplete, please have a check");
}
}
TableCreator::createFilterTable($con, $previousTable, $currentTable);
REDLog::writeInfoLog("Start performing DNA-RNA Filter");
$dnaVcfTable = $args[0];
$editingType = $args[1];
$negativeType = REDTools::getNegativeStrandEditingType($editingType);
try {
$num1 = substr($editingType, 0, 1);
$num2 = substr($negativeType, 0, 1);
$sqlClause = "insert into {$currentTable} select * from {$previousTable} where exists (select chrom\nfrom {$dnaVcfTable} where ({$dnaVcfTable}.chrom={$previousTable}.chrom and {$dnaVcfTable}.pos={$previousTable}.pos and (\n{$dnaVcfTable}.ref='{$num1}' or {$dnaVcfTable}.ref='{$num2}')))";
$v = mysqli_query($con, $sqlClause);
if (!$v) {
throw new Exception("Error execute sql clause in performDNARNAFilter");
}
} catch (Exception $e) {
REDLog::writeErrLog($e->getMessage());
}
REDLog::writeInfoLog("End performing DNA-RNA Filter");
}
function test_row(ValidationTest $test, TableCreator $table_creator)
{
$test->with('children');
if (!isset($test->children) || count($test->children) == 0) {
return "";
}
$str = "\nAll'utente è richiesto di:\n";
$str .= $table_creator->begin_list();
foreach ($test->children as $child) {
$child->with('test');
$id = $child->public_id();
$str .= $table_creator->list_item($table_creator->anchor($id, $child->test->description . " ({$id})"));
$str .= test_row($child, $table_creator);
}
$str .= $table_creator->end_list();
return $str;
}
static function performLikelihoodRateFilter($con, $previousTable, $currentTable, $args)
{
if ($args == null || count($args) == 0) {
return;
} else {
if (count($args) != 2) {
REDLog::writeErrLog("Args for Likelihood Rate Test Filter are incomplete, please have a check");
}
}
$dnaVcfTable = $args[0];
$threshold = (double) $args[1];
TableCreator::createFilterTable($con, $previousTable, $currentTable);
REDLog::writeInfoLog("Start performing Likelihood Rate Test Filter");
$sqlClause1 = "select {$previousTable}.chrom,{$previousTable}.pos,{$previousTable}.AD,\n{$dnaVcfTable}.qual from {$previousTable},{$dnaVcfTable} where {$previousTable}.chrom=\n{$dnaVcfTable}.chrom and {$previousTable}.pos={$dnaVcfTable}.pos";
$rs = DatabaseManager::query1($con, $sqlClause1);
$i = 0;
while ($row = mysqli_fetch_array($rs)) {
$chr = (string) $row[0];
$pos = (int) $row[1];
$ad = (string) $row[2];
$qual = (double) $row[3];
$pb = new SiteBean();
$pb->SiteBean1($chr, $pos);
$pb->setAd($ad);
$pb->setQual($qual);
$siteBeans[$i] = $pb;
$i++;
}
DatabaseManager::setAutoCommit($con, false);
$count = 0;
for ($j = 0; $j < $i; $j++) {
$str = $siteBeans[$j]->getAd();
$section = explode("/", $str);
$ref = (int) $section[0];
$alt = (int) $section[1];
if ($ref + $alt > 0) {
$f_ml = 1.0 * $ref / ($ref + $alt);
$y = pow($f_ml, $ref) * pow(1 - $f_ml, $alt);
$y = log($y) / log(10.0);
$judge = $y + $siteBeans[$j]->getQual() / 10.0;
if ($judge >= $threshold) {
$siteChr = $siteBeans[$j]->getChr();
$sitePos = $siteBeans[$j]->getPos();
$sqlClause2 = "insert into {$currentTable} select * from {$previousTable} where chrom='" . $siteChr . "' and pos=" . $sitePos;
DatabaseManager::insertClause($con, $sqlClause2);
if (++$count % 10000 == 0) {
DatabaseManager::commit($con);
}
}
}
}
DatabaseManager::commit($con);
DatabaseManager::setAutoCommit($con, true);
REDLog::writeInfoLog("End performing Likelihood Rate Test Filter");
}
function test_row(Requirement $req, $indentation, TableCreator $table_creator, $filter_cat, $filter_pri)
{
$test = $req->with('system_test')->system_test;
$validation = $req->with('validation0')->validation0;
$ret = "";
$rv = '';
if (isset($test)) {
$rv = $test->public_id();
} else {
if (isset($validation)) {
$rv = $validation->name;
}
}
$ret .= $table_creator->row(array($table_creator->child_indentation($indentation), $req->public_id(), $rv));
$nested = $req->with('requirements')->requirements;
foreach ($nested as $nreq) {
$ret .= test_row($nreq, $indentation + 1, $table_creator, $filter_cat, $filter_pri);
}
return $ret;
}
static function performQualityControlFilter($con, $previousTable, $currentTable, $args)
{
$COMMIT_COUNTS_PER_ONCE = 10000;
if ($args == null || count($args) == 0) {
return;
} elseif (count($args) != 2) {
REDLog::writeErrLog("Args for Quality Control Filter are incomplete, please have a check");
}
$quality = (double) $args[0];
$depth = (int) $args[1];
TableCreator::createFilterTable($con, $previousTable, $currentTable);
REDLog::writeInfoLog("Start performing Quality Control Filter");
try {
$count = 0;
$str = array("CHROM", "POS", "AD");
$rs = DatabaseManager::query2($con, $previousTable, $str, null, null);
$i = 0;
while ($row = mysqli_fetch_array($rs)) {
if ($row[2] != null) {
$siteBean = new SiteBean();
$siteBean->SiteBean1($row[0], $row[1]);
$siteBean->setAd($row[2]);
$siteBeans[$i] = $siteBean;
$i = $i + 1;
}
}
DatabaseManager::setAutoCommit($con, false);
for ($j = 0; $j < $i; $j++) {
$str = $siteBeans[$j]->getAd();
$section = explode("/", $str);
$ref_n = (int) $section[0];
$alt_n = (int) $section[1];
$pos = $siteBeans[$j]->getPos();
$chr = $siteBeans[$j]->getChr();
if ($ref_n + $alt_n >= $depth) {
$sqlClause = "insert into " . $currentTable . " (select * from " . $previousTable . " where filter='PASS' and pos={$pos} and qual>=" . $quality . " and chrom='" . $chr . "')";
$v = mysqli_query($con, $sqlClause);
if (++$count % $COMMIT_COUNTS_PER_ONCE == 0) {
DatabaseManager::commit($con);
}
}
}
DatabaseManager::commit($con);
DatabaseManager::setAutoCommit($con, true);
if (!$v) {
throw new Exception("Error execute sql clause in QualityControlFilter:performFilter()");
}
} catch (Exception $e) {
REDLog::writeErrLog($e->getMessage());
}
REDLog::writeInfoLog("End performing Quality Control Filter");
}
function requirement_row($req, $indentation, TableCreator $table_creator, $filter_cat, $filter_pri)
{
$ret = "";
if ((!is_numeric($filter_cat) || $req->category == $filter_cat) && (!is_numeric($filter_pri) || $req->priority == $filter_pri)) {
$source_desc = array();
foreach ($req->sources as $rc) {
$rc->with('useCase', 'externalSource');
if (isset($rc->useCase)) {
array_push($source_desc, $table_creator->link($rc->useCase->public_id(), $rc->useCase->public_id()));
} else {
array_push($source_desc, $rc->externalSource->description);
}
}
sort($source_desc);
$cells = array($table_creator->child_indentation($indentation), $req->public_id(), implode("\n\n", $source_desc));
$ret .= $table_creator->row($cells);
}
$nested = $req->with('sources')->findAll("t.parent=:parent", array(':parent' => $req->id_requirement));
foreach ($nested as $nreq) {
$ret .= requirement_row($nreq, $indentation + 1, $table_creator, $filter_cat, $filter_pri);
}
return $ret;
}
static function performKnownSNPFilter($con, $previousTable, $currentTable, $args)
{
REDLog::writeInfoLog("Start performing Known SNP Filter");
TableCreator::createFilterTable($con, $previousTable, $currentTable);
$dbSnpTable = "dbsnp_database";
try {
$sqlClause = "insert into {$currentTable} select * from {$previousTable} where not exists (select chrom from\n{$dbSnpTable} where ({$dbSnpTable}.chrom={$previousTable}.chrom and {$dbSnpTable}.pos={$previousTable}.pos))";
$v = mysqli_query($con, $sqlClause);
if (!$v) {
throw new Exception("Error execute sql clause in performKnownSNPFilter");
}
} catch (Exception $e) {
REDLog::writeErrLog($e->getMessage());
}
REDLog::writeInfoLog("End performing Known SNP Filter");
}
function src_row($uc, $indentation, TableCreator $table_creator)
{
$req_id = array();
$uc->with('idUseCase');
$uc->idUseCase->with('requirements');
foreach ($uc->idUseCase->requirements as $rq) {
array_push($req_id, $table_creator->link($rq->public_id(), $rq->public_id()));
}
$cells = array($table_creator->child_indentation($indentation), $table_creator->link($uc->public_id(), $uc->public_id()), $table_creator->link($uc->public_id(), $uc->title), implode("\n\n", $req_id));
$ret = $table_creator->row($cells);
$nested = UseCase::model()->findAll("t.parent = :parent", array(':parent' => $uc->id_use_case));
foreach ($nested as $nuc) {
$ret .= src_row($nuc, $indentation + 1, $table_creator);
}
return $ret;
}
function component_row(Package $component, $indentation, TableCreator $table_creator)
{
$req_id = array();
$component->with('requirements');
foreach ($component->requirements as $rq) {
array_push($req_id, $table_creator->link($rq->public_id(), $rq->public_id()));
}
array_unique($req_id);
$cells = array($table_creator->child_indentation($indentation), $table_creator->link($component->full_name(), $component->full_name("::\\-")), implode("\n\n", $req_id));
$ret = $table_creator->row($cells);
$nested = $component->with('packages')->packages;
foreach ($nested as $nuc) {
$ret .= component_row($nuc, $indentation + 1, $table_creator);
}
return $ret;
}
static function performRepeatRegionsFilter($con, $previousTable, $currentTable, $args)
{
TableCreator::createFilterTable($con, $previousTable, $currentTable);
REDLog::writeInfoLog("Start performing Repeat Regions Filter");
$repeatTable = "repeat_masker";
try {
$sqlClause1 = "insert into " . $currentTable . " select * from " . $previousTable . " where not exists (select * from " . $repeatTable . " where (" . $repeatTable . ".chrom= " . $previousTable . ".chrom and " . $repeatTable . ".begin<=" . $previousTable . ".pos and " . $repeatTable . ".end>=" . $previousTable . ".pos)) ";
$a = mysqli_query($con, $sqlClause1);
if (!$a) {
throw new Exception("Error execute sqlA clause in performRepeatRegionsFilter");
}
REDLog::writeInfoLog("Start finding sites in Alu Regions");
$tempTable = REDTools::getRandomString(10);
$sqlClause2 = "create temporary table {$tempTable} like {$currentTable}";
$b = mysqli_query($con, $sqlClause2);
if (!$b) {
throw new Exception("Error execute sqlB clause in performRepeatRegionsFilter");
}
$sqlClause3 = "insert into {$tempTable} select * from {$previousTable} where exists (select chrom from {$repeatTable}\nwhere {$repeatTable}.chrom = {$previousTable}.chrom and {$repeatTable}.begin<={$previousTable}.pos and\n{$repeatTable}.end>={$previousTable}.pos and {$repeatTable}.type='SINE/Alu')";
$c = mysqli_query($con, $sqlClause3);
if (!$c) {
throw new Exception("Error execute sqlC clause in performRepeatRegionsFilter");
}
$sqlClause4 = "update {$tempTable} set alu='T'";
$d = mysqli_query($con, $sqlClause4);
if (!$d) {
throw new Exception("Error execute sqlD clause in performRepeatRegionsFilter");
}
$sqlClause5 = "insert into {$currentTable} select * from {$tempTable}";
$e = mysqli_query($con, $sqlClause5);
if (!$e) {
throw new Exception("Error execute sqlE clause in performRepeatRegionsFilter");
}
DatabaseManager::deleteTable($con, $tempTable);
REDLog::writeInfoLog("End finding sites in Alu Regions");
} catch (Exception $e) {
REDLog::writeErrLog($e->getMessage());
}
REDLog::writeInfoLog("End performing Repeat Regions Filter");
}
static function performEditingTypeFilter($con, $previousTable, $currentTable, $args)
{
REDLog::writeInfoLog('Star executing Editing Type Filter');
TableCreator::createFilterTable($con, $previousTable, $currentTable);
$refAlt = $args;
$refAlt2 = REDTools::getNegativeStrandEditingType($refAlt);
$sql11 = substr($refAlt, 0, 1);
$sql12 = substr($refAlt, 1);
$sql21 = substr($refAlt2, 0, 1);
$sql22 = substr($refAlt2, 1);
$sql1 = "insert into " . $currentTable . " select * from " . $previousTable . " WHERE REF='{$sql11}' AND ALT='{$sql12}' AND GT!='0/0'";
$v = DatabaseManager::insertClause($con, $sql1);
if (!$v) {
REDLog::writeErrLog('There is a syntax error for SQL clause:' . $sql1);
}
$sql2 = "insert into " . $currentTable . " select * from " . $previousTable . " WHERE REF='{$sql21}' AND ALT='{$sql22}' AND GT!='0/0'";
$v = DatabaseManager::insertClause($con, $sql2);
if (!$v) {
REDLog::writeErrLog('There is a syntax error for SQL clause:' . $sql2);
}
REDLog::writeInfoLog('End executing Editing Type Filter');
}
static function createDBSNPTable($con, $tableName)
{
try {
$tableLists = DatabaseManager::getCurrentTables($con, self::$dbName);
$v = in_array($tableName, $tableLists);
if (!$v) {
$rs = false;
} else {
$rs = true;
}
if (!$rs) {
$columnName = array("chrom", "pos");
$columnParams = array("varchar(30)", "int");
$index = "index(chrom,pos)";
$a = TableCreator::createReferenceTable($con, $tableName, $columnName, $columnParams, $index);
if (!$a) {
throw new Exception("Error create dbSNP table");
}
}
} catch (Exception $e) {
REDLog::writeErrLog($e->getMessage());
}
}
static function createRefSeqGeneTable($con, $tableName)
{
try {
$tableLists = DatabaseManager::getCurrentTables($con, self::$dbName);
$v = in_array($tableName, $tableLists);
if (!$v) {
$rs = false;
} else {
$rs = true;
}
if (!$rs) {
$columnName = array("bin", "name", "chrom", "strand", "txStart", "txEnd", "cdsStart", "cdsEnd", "exonCount", "exonStarts", "exonEnds", "score", "name2", "cdsStartStat", "cdsEndStat", "exonFrames");
$columnParams = array("int", "varchar(255)", "varchar(255)", "varchar(1)", "int", "int", "int", "int", "int", "longblob", "longblob", "int", "varchar(255)", "varchar(8)", "varchar(8)", "longblob");
$index = "index(chrom,txStart,txEnd)";
$a = TableCreator::createReferenceTable($con, $tableName, $columnName, $columnParams, $index);
if (!$a) {
throw new Exception("Error create RefSeqGene table");
}
}
} catch (Exception $e) {
REDLog::writeErrLog($e->getMessage());
}
}
static function createSpliceJunctionTable($con, $tableName)
{
try {
$tableLists = DatabaseManager::getCurrentTables($con, self::$dbName);
$v = in_array($tableName, $tableLists);
if (!$v) {
$rs = false;
} else {
$rs = true;
}
if (!$rs) {
//existTable($tableName)
$columnName = array("chrom", "ref", "type", "begin", "end", "score", "strand", "frame", "info");
$columnParams = array("varchar(30)", "varchar(30)", "varchar(10)", "int", "int", "float(8,6)", "varchar(1)", "varchar(1)", "varchar(100)");
$index = "index(chrom,type)";
$v = TableCreator::createReferenceTable($con, $tableName, $columnName, $columnParams, $index);
if (!$v) {
throw new Exception("Error create Splice Junction table");
}
}
} catch (Exception $e) {
REDLog::writeErrLog($e->getMessage());
}
}
static function createRepeatRegionsTable($con, $tableName)
{
try {
$tableLists = DatabaseManager::getCurrentTables($con, self::$dbName);
$v = in_array($tableName, $tableLists);
if (!$v) {
$rs = false;
} else {
$rs = true;
}
if (!$rs) {
//existTable($tableName)
$columnName = array("chrom", "begin", "end", "type");
$columnParams = array("varchar(30)", "int", "int", "varchar(40)");
$index = "index(chrom,begin,end)";
$v = TableCreator::createReferenceTable($con, $tableName, $columnName, $columnParams, $index);
if (!$v) {
throw new Exception("Error create repeat regions table");
}
}
} catch (Exception $e) {
REDLog::writeErrLog($e->getMessage());
}
}
static function performSpliceJunctionFilter($con, $previousTable, $currentTable, $args)
{
if ($args == null || $args == 0) {
return;
} else {
if (count($args) != 1) {
REDLog::writeErrLog("Args for Splice Junction Filter are incomplete, please have a check");
}
}
TableCreator::createFilterTable($con, $previousTable, $currentTable);
REDLog::writeInfoLog("Start performing Splice Junction Filter...");
$spliceJunctionTable = "splice_junction";
$edge = (int) $args[0];
try {
$sqlClause = "insert into {$currentTable} select * from {$previousTable} where not exists (select chrom from\n{$spliceJunctionTable} where ({$spliceJunctionTable}.type='CDS' and {$spliceJunctionTable}.chrom={$previousTable}.chrom\nand (({$spliceJunctionTable}.begin<{$previousTable}.pos+{$edge} and {$spliceJunctionTable}.begin>{$previousTable}.pos-{$edge})\nor ({$spliceJunctionTable}.end<{$previousTable}.pos+{$edge} and {$spliceJunctionTable}.end>{$previousTable}.pos-{$edge}))))";
$v = mysqli_query($con, $sqlClause);
if (!$v) {
throw new Exception("Error execute sql clause in performSpliceJunctionFilter");
}
} catch (Exception $e) {
REDLog::writeErrLog($e->getMessage());
}
REDLog::writeInfoLog("End performing Splice Junction Filter...");
}
function display_package(Package $pack, $indentation, TableCreator $table_creator)
{
$txt = "";
/*$name = $pack->full_name("::");
if ( !$pack->virtual )
{
$txt .= $table_creator->anchor($name,'')."\n";
$txt .= $table_creator->title(2,$name);
$txt .= $pack->description."\n\n";
}*/
if ($indentation == 1) {
$txt .= $table_creator->title(2, $pack->name);
}
//else if ( $indentation == 2 )
// $txt .= $table_creator->title(3,$pack->name);
$pack->with('classes', 'packages');
foreach ($pack->classes as $c) {
$txt .= display_class($c, $table_creator);
}
foreach ($pack->packages as $p) {
$txt .= display_package($p, $indentation + 1, $table_creator);
}
return $txt;
}
function requirement_row($req, $indentation, TableCreator $table_creator, $filter_cat, $filter_pri)
{
$ret = "";
if ((!is_numeric($filter_cat) || $req->category == $filter_cat) && (!is_numeric($filter_pri) || $req->priority == $filter_pri)) {
$pkg_name = array();
foreach ($req->classes as $c) {
array_push($pkg_name, $table_creator->link($c->full_name(), $c->name));
}
array_unique($pkg_name);
sort($pkg_name);
$cells = array($table_creator->child_indentation($indentation), $table_creator->link($req->public_id(), $req->public_id()), implode("\n\n", $pkg_name));
$ret .= $table_creator->row($cells);
}
$nested = Requirement::model()->with('classes')->findAll("t.parent=:parent", array(':parent' => $req->id_requirement));
foreach ($nested as $nreq) {
$ret .= requirement_row($nreq, $indentation + 1, $table_creator, $filter_cat, $filter_pri);
}
return $ret;
}
function test_row(UnitTest $test, $indentation, TableCreator $table_creator)
{
return $table_creator->row(array($table_creator->child_indentation($indentation), $test->public_id(), $test->test->description, $test->method->name . "()", 'success'));
}
function display_class(Class_Prog $class, TableCreator $table_creator)
{
$txt = "";
if (!$class->library) {
$id = $class->full_name();
$name = $class->full_name(" :: ");
$txt .= $table_creator->anchor($id, '') . "\n";
$txt .= $table_creator->title(4, $name, $class->name);
$txt .= $table_creator->begin_desc_list();
$txt .= $table_creator->desc_list_item('Descrizione', $class->description);
if (strlen(trim($class->usage)) > 0) {
$txt .= $table_creator->desc_list_item('Utilizzo', $class->usage);
}
$class->with('children', 'parents');
if (count($class->parents)) {
$inh_txt = '';
$inh_txt .= "\\vspace{-7mm}\n";
$inh_txt .= $table_creator->begin_list();
foreach ($class->parents as $par) {
if (!$par->library) {
$inh_txt .= $table_creator->list_item($table_creator->link($par->full_name(), $par->full_name(" :: ")));
} else {
$inh_txt .= $table_creator->list_item($par->full_name());
}
}
$inh_txt .= $table_creator->end_list();
$txt .= $table_creator->desc_list_item('Classi ereditate', $inh_txt);
}
if (count($class->children)) {
$inh_txt = '';
$inh_txt .= "\\vspace{-7mm}\n";
$inh_txt .= $table_creator->begin_list();
foreach ($class->children as $par) {
$inh_txt .= $table_creator->list_item($table_creator->link($par->full_name(), $par->full_name(" :: ")));
}
$inh_txt .= $table_creator->end_list();
$txt .= $table_creator->desc_list_item('Classi figlie', $inh_txt);
}
$ass = Association::model()->findAll('class_from = :idc or class_to = :idc', array(':idc' => $class->id_class));
if (count($ass)) {
$rel = '';
$rel .= "\\vspace{-7mm}\n";
$rel .= $table_creator->begin_desc_list();
foreach ($ass as $ss) {
if ($ss->class_to != $class->id_class) {
$par = $ss->with('classTo')->classTo;
$ass_dir = "uscente";
} else {
if ($ss->class_from != $class->id_class) {
$par = $ss->with('classFrom')->classFrom;
$ass_dir = "entrante";
} else {
continue;
}
}
$ss->with('attribute');
if (!$par->library) {
$acn = $par->full_name();
if (strlen($acn) > 60) {
$acn = substr($acn, strlen($acn) - 60);
$acn = "..." . substr($acn, strpos($acn, "::") + 2);
}
$ass_name = $table_creator->link($par->full_name(), $acn);
} else {
$ass_name = $par->full_name();
}
$ass_txt = "Relazione {$ass_dir}, " . lcfirst($ss->attribute->description);
$rel .= $table_creator->desc_list_item($ass_name, $ass_txt);
}
$rel .= $table_creator->end_desc_list();
$txt .= $table_creator->desc_list_item('Relazioni con altre classi', $rel);
}
}
$txt .= $table_creator->end_desc_list();
$txt .= "\n\\vspace{0.5cm}\n";
return $txt;
}
function test_row(Method $meth, TableCreator $table_creator)
{
$text = $meth->ttest != null ? $meth->ttest->unitTest->public_id() : '';
return $table_creator->row(array(Class_Prog::model()->findByPK($meth->id_class)->name . "::" . $meth->name . "()", $text));
}
<?php include '../database/DatabaseConnect.php'; include '../database/TableCreator.php'; include '../database/DatabaseManager.php'; include '../REDTools/REDLog.php'; $con = DatabaseConnect::mysqlConnect(); TableCreator::createFilterTable($con, 'users', 'test'); echo 'success';