public function setDwcArr($dwcObj)
{
$recArr = json_decode($dwcObj, true);
if ($recArr) {
$recArr = array_change_key_case($recArr);
//Translate fields
foreach ($this->fieldTranslation as $otherName => $symbName) {
if (array_key_exists($otherName, $recArr) && !array_key_exists($symbName, $recArr)) {
$recArr[$symbName] = $recArr[$otherName];
unset($recArr[$otherName]);
}
}
//Filter out unapproved fields
$recArr = array_intersect_key($recArr, array_flip($this->approvedFields));
$this->dwcArr = OccurrenceUtilities::occurrenceArrayCleaning($recArr);
if ($this->dwcArr) {
return true;
}
}
return false;
}
protected function loadRecord($recMap)
{
//Only import record if at least one of the minimal fields have data
if (array_key_exists('dbpk', $recMap) && $recMap['dbpk'] || array_key_exists('catalognumber', $recMap) && $recMap['catalognumber'] || array_key_exists('recordedby', $recMap) && $recMap['recordedby'] || array_key_exists('eventdate', $recMap) && $recMap['eventdate'] || array_key_exists('locality', $recMap) && $recMap['locality'] || array_key_exists('sciname', $recMap) && $recMap['sciname'] || array_key_exists('scientificname', $recMap) && $recMap['scientificname']) {
$recMap = OccurrenceUtilities::occurrenceArrayCleaning($recMap);
//Remove institution and collection codes when they match what is in omcollections
if (array_key_exists('institutioncode', $recMap) && $recMap['institutioncode'] == $this->collMetadataArr["institutioncode"]) {
unset($recMap['institutioncode']);
}
if (array_key_exists('collectioncode', $recMap) && $recMap['collectioncode'] == $this->collMetadataArr["collectioncode"]) {
unset($recMap['collectioncode']);
}
//If a DiGIR load, set dbpk value
if ($this->pKField && array_key_exists($this->pKField, $recMap) && !array_key_exists('dbpk', $recMap)) {
$recMap['dbpk'] = $recMap[$this->pKField];
}
//Do some cleaning on the dbpk; remove leading and trailing whitespaces and convert multiple spaces to a single space
if (array_key_exists('dbpk', $recMap)) {
$recMap['dbpk'] = trim(preg_replace('/\\s\\s+/', ' ', $recMap['dbpk']));
}
//Temporarily code until Specify output UUID as occurrenceID
if ($this->sourceDatabaseType == 'specify' && (!isset($recMap['occurrenceid']) || !$recMap['occurrenceid'])) {
if (strlen($recMap['dbpk']) == 36) {
$recMap['occurrenceid'] = $recMap['dbpk'];
}
}
$sqlFragments = $this->getSqlFragments($recMap, $this->fieldMap);
$sql = 'INSERT INTO uploadspectemp(collid' . $sqlFragments['fieldstr'] . ') ' . 'VALUES(' . $this->collId . $sqlFragments['valuestr'] . ')';
//echo "<div>SQL: ".$sql."</div>";
if ($this->conn->query($sql)) {
$this->transferCount++;
if ($this->transferCount % 1000 == 0) {
$this->outputMsg('<li style="margin-left:10px;">Count: ' . $this->transferCount . '</li>');
}
ob_flush();
flush();
//$this->outputMsg("<li>");
//$this->outputMsg("Appending/Replacing observation #".$this->transferCount.": SUCCESS");
//$this->outputMsg("</li>");
} else {
$this->outputMsg("<li>FAILED adding record #" . $this->transferCount . "</li>");
$this->outputMsg("<li style='margin-left:10px;'>Error: " . $this->conn->error . "</li>");
$this->outputMsg("<li style='margin:0px 0px 10px 10px;'>SQL: {$sql}</li>");
}
}
}
