/**
* Initialize form data from current article.
*/
function initData()
{
$sectionDao =& DAORegistry::getDAO('SectionDAO');
if (isset($this->article)) {
$article =& $this->article;
$articleContact = $article->getArticleContact();
$this->_data = array('pqName' => $articleContact->getPQName(), 'pqAffiliation' => $articleContact->getPQAffiliation(), 'pqAddress' => $articleContact->getPQAddress(), 'pqCountry' => $articleContact->getPQCountry(), 'pqPhone' => $articleContact->getPQPhone(), 'pqFax' => $articleContact->getPQFax(), 'pqEmail' => $articleContact->getPQEmail(), 'sqName' => $articleContact->getSQName(), 'sqAffiliation' => $articleContact->getSQAffiliation(), 'sqAddress' => $articleContact->getSQAddress(), 'sqCountry' => $articleContact->getSQCountry(), 'sqPhone' => $articleContact->getSQPhone(), 'sqFax' => $articleContact->getSQFax(), 'sqEmail' => $articleContact->getSQEmail());
}
return parent::initData();
}
/**
* Initialize form data from current article.
*/
function initData()
{
$sectionDao =& DAORegistry::getDAO('SectionDAO');
if (isset($this->article)) {
$article =& $this->article;
$this->_data = array('authors' => array(), 'title' => $article->getTitle(null), 'abstract' => $article->getAbstract(null), 'discipline' => $article->getDiscipline(null), 'subjectClass' => $article->getSubjectClass(null), 'subject' => $article->getSubject(null), 'coverageGeo' => $article->getCoverageGeo(null), 'coverageChron' => $article->getCoverageChron(null), 'coverageSample' => $article->getCoverageSample(null), 'type' => $article->getType(null), 'language' => $article->getLanguage(), 'sponsor' => $article->getSponsor(null), 'section' => $sectionDao->getSection($article->getSectionId()), 'citations' => $article->getCitations());
$authors =& $article->getAuthors();
for ($i = 0, $count = count($authors); $i < $count; $i++) {
array_push($this->_data['authors'], array('authorId' => $authors[$i]->getId(), 'firstName' => $authors[$i]->getFirstName(), 'middleName' => $authors[$i]->getMiddleName(), 'lastName' => $authors[$i]->getLastName(), 'affiliation' => $authors[$i]->getAffiliation(null), 'country' => $authors[$i]->getCountry(), 'email' => $authors[$i]->getEmail(), 'orcid' => $authors[$i]->getData('orcid'), 'url' => $authors[$i]->getUrl(), 'competingInterests' => $authors[$i]->getCompetingInterests(null), 'biography' => $authors[$i]->getBiography(null)));
if ($authors[$i]->getPrimaryContact()) {
$this->setData('primaryContact', $i);
}
}
}
return parent::initData();
}
/**
* Initialize form data from current article.
*/
function initData()
{
if (isset($this->article)) {
$article =& $this->article;
$articleSites = $article->getArticleSites();
$articleSitesArray = array();
if ($articleSites == null) {
$articleSitesArray = array(0 => array('investigators' => array(0 => null)));
} else {
foreach ($articleSites as $articleSite) {
$investigators = $articleSite->getInvestigators();
$investigatorsArray = array();
foreach ($investigators as $investigator) {
array_push($investigatorsArray, array('id' => $investigator->getId(), 'firstName' => $investigator->getFirstName(), 'lastName' => $investigator->getLastName(), 'expertise' => $investigator->getExpertise(), 'iPrimaryPhone' => $investigator->getPrimaryPhoneNumber(), 'iSecondaryPhone' => $investigator->getSecondaryPhoneNumber(), 'iFax' => $investigator->getFaxNumber(), 'iEmail' => $investigator->getEmail()));
}
array_push($articleSitesArray, array('id' => $articleSite->getId(), 'siteSelect' => $articleSite->getSiteId(), 'authority' => $articleSite->getAuthority(), 'erc' => $articleSite->getERCId(), 'primaryPhone' => $articleSite->getPrimaryPhone(), 'secondaryPhone' => $articleSite->getSecondaryPhone(), 'fax' => $articleSite->getFax(), 'email' => $articleSite->getEmail(), 'subjectsNumber' => $articleSite->getSubjectsNumber(), 'investigators' => $investigatorsArray));
}
}
$this->_data = array('articleSites' => $articleSitesArray);
}
return parent::initData();
}
/**
* Initialize form data from current article.
*/
function initData()
{
$sectionDao =& DAORegistry::getDAO('SectionDAO');
if (isset($this->article)) {
$article =& $this->article;
// Initialize th proposal details
$proposalDetails =& $article->getProposalDetails();
$countriesArray = $proposalDetails->getCountries();
$countries = explode(",", $countriesArray);
$geoAreas = $proposalDetails->getGeoAreasArray();
if ($geoAreas == null) {
$geoAreas = array(0 => '');
}
$researchDomainsArray = $proposalDetails->getResearchDomainsArray();
if ($researchDomainsArray == null) {
$researchDomainsArray = array(0 => '');
}
$researchFieldsArray = $proposalDetails->getResearchFieldsArray();
if ($researchFieldsArray == null) {
$researchFieldsArray = array(0 => '');
} else {
$i = 0;
foreach ($researchFieldsArray as $field) {
if (preg_match('#^Other\\s\\(.+\\)$#', $field)) {
$tempField = $field;
$field = preg_replace('#^Other\\s\\(.+\\)$#', 'OTHER', $field);
$tempField = preg_replace('#^Other\\s\\(#', '', $tempField);
$tempField = preg_replace('#\\)$#', '', $tempField);
$proposalDetails->setOtherResearchField($tempField);
}
$test = array($i => $field);
$researchFieldsArray = array_replace($researchFieldsArray, $test);
$i++;
unset($field);
}
}
$proposalTypesArray = $proposalDetails->getProposalTypesArray();
if ($proposalTypesArray == null) {
$proposalTypesArray = array(0 => '');
} else {
$f = 0;
foreach ($proposalTypesArray as $type) {
if (preg_match('#^Other\\s\\(.+\\)$#', $type)) {
$tempType = $type;
$type = preg_replace('#^Other\\s\\(.+\\)$#', 'OTHER', $type);
$tempType = preg_replace('#^Other\\s\\(#', '', $tempType);
$tempType = preg_replace('#\\)$#', '', $tempType);
$proposalDetails->setOtherProposalType($tempType);
}
$test2 = array($f => $type);
$proposalTypesArray = array_replace($proposalTypesArray, $test2);
$f++;
unset($type);
}
}
$committeeReviewed = $proposalDetails->getCommitteeReviewed();
if ($committeeReviewed == "2" || $committeeReviewed == "3") {
$reviewedByOtherErc = "2";
$otherErcDecision = $committeeReviewed;
} elseif ($committeeReviewed == "1") {
$reviewedByOtherErc = $committeeReviewed;
$otherErcDecision = $committeeReviewed;
} else {
$reviewedByOtherErc = null;
$otherErcDecision = "1";
}
$proposalDetailsArray = array('studentInitiatedResearch' => $proposalDetails->getStudentResearch(), 'startDate' => $proposalDetails->getStartDate(), 'endDate' => $proposalDetails->getEndDate(), 'keyImplInstitution' => $proposalDetails->getKeyImplInstitution(), 'multiCountryResearch' => $proposalDetails->getMultiCountryResearch(), 'countries' => $countries, 'nationwide' => $proposalDetails->getNationwide(), 'geoAreas' => $geoAreas, 'researchDomains' => $researchDomainsArray, 'researchFields' => $researchFieldsArray, 'otherResearchField' => $proposalDetails->getOtherResearchField(), 'withHumanSubjects' => $proposalDetails->getHumanSubjects(), 'proposalTypes' => $proposalTypesArray, 'otherProposalType' => $proposalDetails->getOtherProposalType(), 'dataCollection' => $proposalDetails->getDataCollection(), 'reviewedByOtherErc' => $reviewedByOtherErc, 'otherErcDecision' => $otherErcDecision);
// Student research
$studentResearch =& $proposalDetails->getStudentResearchInfo();
$studentResearchArray = array('studentInstitution' => $studentResearch->getInstitution(), 'academicDegree' => $studentResearch->getDegree(), 'supervisorName' => $studentResearch->getSupervisorName(), 'supervisorEmail' => $studentResearch->getSupervisorEmail());
// Risk Assessments
$riskAssessment =& $article->getRiskAssessment();
$riskAssessmentArray = array('identityRevealed' => $riskAssessment->getIdentityRevealed(), 'unableToConsent' => $riskAssessment->getUnableToConsent(), 'under18' => $riskAssessment->getUnder18(), 'dependentRelationship' => $riskAssessment->getDependentRelationship(), 'ethnicMinority' => $riskAssessment->getEthnicMinority(), 'impairment' => $riskAssessment->getImpairment(), 'pregnant' => $riskAssessment->getPregnant(), 'newTreatment' => $riskAssessment->getNewTreatment(), 'bioSamples' => $riskAssessment->getBioSamples(), 'exportHumanTissue' => $riskAssessment->getExportHumanTissue(), 'exportReason' => $riskAssessment->getExportReason(), 'radiation' => $riskAssessment->getRadiation(), 'distress' => $riskAssessment->getDistress(), 'inducements' => $riskAssessment->getInducements(), 'sensitiveInfo' => $riskAssessment->getSensitiveInfo(), 'reproTechnology' => $riskAssessment->getReproTechnology(), 'genetic' => $riskAssessment->getGenetic(), 'stemCell' => $riskAssessment->getStemCell(), 'biosafety' => $riskAssessment->getBiosafety(), 'riskLevel' => $riskAssessment->getRiskLevel(), 'listRisks' => $riskAssessment->getListRisks(), 'howRisksMinimized' => $riskAssessment->getHowRisksMinimized(), 'risksToTeam' => $riskAssessment->getRisksToTeam(), 'risksToSubjects' => $riskAssessment->getRisksToSubjects(), 'risksToCommunity' => $riskAssessment->getRisksToCommunity(), 'benefitsToParticipants' => $riskAssessment->getBenefitsToParticipants(), 'knowledgeOnCondition' => $riskAssessment->getKnowledgeOnCondition(), 'knowledgeOnDisease' => $riskAssessment->getKnowledgeOnDisease(), 'conflictOfInterest' => $riskAssessment->getConflictOfInterest(), 'multiInstitutions' => $riskAssessment->getMultiInstitutions());
$this->_data = array('authors' => array(), 'abstracts' => array(), 'proposalDetails' => $proposalDetailsArray, 'sources' => array(), 'studentResearch' => $studentResearchArray, 'riskAssessment' => $riskAssessmentArray, 'section' => $sectionDao->getSection($article->getSectionId()));
$authors =& $article->getAuthors();
for ($i = 0, $count = count($authors); $i < $count; $i++) {
array_push($this->_data['authors'], array('authorId' => $authors[$i]->getId(), 'firstName' => $authors[$i]->getFirstName(), 'middleName' => $authors[$i]->getMiddleName(), 'lastName' => $authors[$i]->getLastName(), 'affiliation' => $authors[$i]->getAffiliation(), 'phone' => $authors[$i]->getPhoneNumber(), 'email' => $authors[$i]->getEmail()));
if ($authors[$i]->getPrimaryContact()) {
$this->setData('primaryContact', $i);
}
}
$sources =& $article->getSources();
if (empty($sources)) {
array_push($sources, new ProposalSource());
}
for ($i = 0, $count = count($sources); $i < $count; $i++) {
array_push($this->_data['sources'], array('sourceId' => $sources[$i]->getSourceId(), 'institution' => $sources[$i]->getInstitutionId(), 'amount' => $sources[$i]->getSourceAmount()));
}
$journal = Request::getJournal();
$abstracts =& $article->getAbstracts();
foreach ($journal->getSupportedLocaleNames() as $localeKey => $localeValue) {
if (isset($abstracts[$localeKey])) {
$this->_data['abstracts'][$localeKey] = array('abstractId' => $abstracts[$localeKey]->getAbstractId(), 'scientificTitle' => $abstracts[$localeKey]->getScientificTitle(), 'publicTitle' => $abstracts[$localeKey]->getPublicTitle(), 'background' => $abstracts[$localeKey]->getBackground(), 'objectives' => $abstracts[$localeKey]->getObjectives(), 'studyMethods' => $abstracts[$localeKey]->getStudyMethods(), 'expectedOutcomes' => $abstracts[$localeKey]->getExpectedOutcomes(), 'keywords' => $abstracts[$localeKey]->getKeywords());
}
}
}
return parent::initData();
}
/**
* Initialize form data from current article.
*/
function initData()
{
if (isset($this->article)) {
$article =& $this->article;
$fundingSources = $article->getArticleFundingSources();
$fundingSourcesArray = array();
if ($fundingSources == null) {
$fundingSourcesArray = array(0 => null);
} else {
foreach ($fundingSources as $fundingSource) {
array_push($fundingSourcesArray, array('id' => $fundingSource->getId(), 'institutionId' => $fundingSource->getInstitutionId()));
}
}
$primarySponsor = $article->getArticlePrimarySponsor();
$primarySponsorArray = array();
if ($primarySponsor != null) {
$primarySponsorArray = array('id' => $primarySponsor->getId(), 'institutionId' => $primarySponsor->getInstitutionId());
}
$secondarySponsors = $article->getArticleSecondarySponsors();
$secondarySponsorsArray = array();
if ($secondarySponsors == null) {
$secondarySponsorsArray = array(0 => null);
} else {
foreach ($secondarySponsors as $secondarySponsor) {
array_push($secondarySponsorsArray, array('id' => $secondarySponsor->getId(), 'ssInstitutionId' => $secondarySponsor->getInstitutionId()));
}
}
$articleDetails = $article->getArticleDetails();
$CROs = $article->getArticleCROs();
$CROsArray = array();
if ($CROs == null) {
$CROsArray = array(0 => null);
} else {
foreach ($CROs as $CRO) {
$international = $CRO->getInternational();
if ($international == CRO_NATIONAL) {
$locationCountry = $CRO->getLocation();
$locationInternational = null;
} elseif ($international == CRO_INTERNATIONAL) {
$locationCountry = null;
$locationInternational = $CRO->getLocation();
} else {
$locationCountry = null;
$locationInternational = null;
}
array_push($CROsArray, array('id' => $CRO->getId(), 'croName' => $CRO->getName(), 'croLocation' => $international, 'croLocationCountry' => $locationCountry, 'croLocationInternational' => $locationInternational, 'city' => $CRO->getCity(), 'address' => $CRO->getAddress(), 'primaryPhone' => $CRO->getPrimaryPhone(), 'secondaryPhone' => $CRO->getSecondaryPhone(), 'fax' => $CRO->getFax(), 'email' => $CRO->getEmail()));
}
}
$this->_data = array('fundingSources' => $fundingSourcesArray, 'primarySponsor' => $primarySponsorArray, 'secondarySponsors' => $secondarySponsorsArray, 'croInvolved' => $articleDetails->getCROInvolved(), 'CROs' => $CROsArray);
}
return parent::initData();
}
/**
* Initialize form data from current article.
*/
function initData()
{
$journal = Request::getJournal();
if (isset($this->article)) {
$article =& $this->article;
$articleSecIds =& $article->getArticleSecIds();
$articleSecIdsArray = array();
if ($articleSecIds == null) {
$articleSecIdsArray = array(0 => array('type' => null, 'id' => null));
} else {
foreach ($articleSecIds as $articleSecId) {
array_push($articleSecIdsArray, array('articleSecIdId' => $articleSecId->getId(), 'type' => $articleSecId->getType(), 'id' => $articleSecId->getSecId()));
}
}
$articleDetails =& $article->getArticleDetails();
$healthConds = $articleDetails->getHealthCondDiseaseArray();
if ($healthConds == null) {
$healthConds = array(0 => array('code' => null, 'exactCode' => null));
}
$intSampleSize = $articleDetails->getIntSampleSizeArray();
if ($intSampleSize == null) {
$intSampleSize = array(0 => array('country' => null, 'number' => null));
}
$articleDetailsArray = array('protocolVersion' => $articleDetails->getProtocolVersion(), 'therapeuticArea' => $articleDetails->getTherapeuticArea(), 'otherTherapeuticArea' => $articleDetails->getOtherTherapeuticArea(), 'healthConds' => $healthConds, 'minAgeNum' => $articleDetails->getMinAgeNum(), 'minAgeUnit' => $articleDetails->getMinAgeUnit(), 'maxAgeNum' => $articleDetails->getMaxAgeNum(), 'maxAgeUnit' => $articleDetails->getMaxAgeUnit(), 'sex' => $articleDetails->getSex(), 'healthy' => $articleDetails->getHealthy(), 'localeSampleSize' => $articleDetails->getLocaleSampleSize(), 'multinational' => $articleDetails->getMultinational(), 'intSampleSize' => $intSampleSize, 'startDate' => $articleDetails->getStartDate(), 'endDate' => $articleDetails->getEndDate(), 'recruitStatus' => $articleDetails->getRecruitmentStatus(), 'adScheme' => $articleDetails->getAdvertisingScheme(), 'compensationPolicy' => $articleDetails->getCompensationPolicy());
$purposes =& $article->getArticlePurposes();
$purposesArray = array();
if ($purposes == null) {
$purposesArray = array(0 => array('interventional' => null, 'type' => null, 'ctPhase' => null, 'allocation' => null, 'masking' => null, 'control' => null, 'assignment' => null, 'endpoint' => null));
} else {
foreach ($purposes as $purpose) {
array_push($purposesArray, array('id' => $purpose->getId(), 'interventional' => $purpose->getInterventional(), 'type' => $purpose->getType(), 'ctPhase' => $purpose->getCTPhase(), 'allocation' => $purpose->getAllocation(), 'masking' => $purpose->getMasking(), 'control' => $purpose->getControl(), 'assignment' => $purpose->getAssignment(), 'endpoint' => $purpose->getEndpoint()));
}
}
$primaryOutcomes = $article->getArticleOutcomesByType(ARTICLE_OUTCOME_PRIMARY);
$primaryOutcomesArray = array();
if (empty($primaryOutcomes)) {
foreach ($journal->getSupportedLocaleNames() as $localeKey => $localeValue) {
$primaryOutcomesArray = array(0 => array($localeKey => array('primaryOutcomeId' => null, 'type' => ARTICLE_OUTCOME_PRIMARY, 'name' => null, 'measurement' => null, 'timepoint' => null)));
}
} else {
foreach ($primaryOutcomes as $poKey => $primaryOutcome) {
foreach ($journal->getSupportedLocaleNames() as $localeKey => $localeValue) {
if (isset($primaryOutcome[$localeKey])) {
$primaryOutcomesArray[$poKey][$localeKey] = array('primaryOutcomeId' => $primaryOutcome[$localeKey]->getId(), 'type' => ARTICLE_OUTCOME_PRIMARY, 'name' => $primaryOutcome[$localeKey]->getName(), 'measurement' => $primaryOutcome[$localeKey]->getMeasurement(), 'timepoint' => $primaryOutcome[$localeKey]->getTimepoint());
}
}
}
}
$secondaryOutcomes = $article->getArticleOutcomesByType(ARTICLE_OUTCOME_SECONDARY);
$secondaryOutcomesArray = array();
if (empty($secondaryOutcomes)) {
foreach ($journal->getSupportedLocaleNames() as $localeKey => $localeValue) {
$secondaryOutcomesArray = array(0 => array($localeKey => array('primaryOutcomeId' => null, 'type' => ARTICLE_OUTCOME_SECONDARY, 'name' => null, 'measurement' => null, 'timepoint' => null)));
}
} else {
foreach ($secondaryOutcomes as $soKey => $secondaryOutcome) {
foreach ($journal->getSupportedLocaleNames() as $localeKey => $localeValue) {
if (isset($secondaryOutcome[$localeKey])) {
$secondaryOutcomesArray[$soKey][$localeKey] = array('secondaryOutcomeId' => $secondaryOutcome[$localeKey]->getId(), 'type' => ARTICLE_OUTCOME_SECONDARY, 'name' => $secondaryOutcome[$localeKey]->getName(), 'measurement' => $secondaryOutcome[$localeKey]->getMeasurement(), 'timepoint' => $secondaryOutcome[$localeKey]->getTimepoint());
}
}
}
}
$this->_data = array('articleTexts' => array(), 'articleDetails' => $articleDetailsArray, 'articleSecIds' => $articleSecIdsArray, 'purposes' => $purposesArray, 'primaryOutcomes' => $primaryOutcomesArray, 'secondaryOutcomes' => $secondaryOutcomesArray);
$articleTexts =& $article->getArticleTexts();
foreach ($journal->getSupportedLocaleNames() as $localeKey => $localeValue) {
if (isset($articleTexts[$localeKey])) {
$this->_data['articleTexts'][$localeKey] = array('articleTextId' => $articleTexts[$localeKey]->getId(), 'scientificTitle' => $articleTexts[$localeKey]->getScientificTitle(), 'publicTitle' => $articleTexts[$localeKey]->getPublicTitle(), 'description' => $articleTexts[$localeKey]->getDescription(), 'keyInclusionCriteria' => $articleTexts[$localeKey]->getKeyInclusionCriteria(), 'keyExclusionCriteria' => $articleTexts[$localeKey]->getKeyExclusionCriteria(), 'recruitmentInfo' => $articleTexts[$localeKey]->getRecruitmentInfo());
}
}
}
return parent::initData();
}
/**
* Initialize form data from current article.
*/
function initData()
{
$sectionDao =& DAORegistry::getDAO('SectionDAO');
if (isset($this->article)) {
$article =& $this->article;
$articleDrugs =& $article->getArticleDrugs();
$articleDrugsArray = array();
if ($articleDrugs == null) {
$articleDrugsArray = array(0 => array('countries' => array(0 => null), 'manufacturers' => array(0 => null)));
} else {
foreach ($articleDrugs as $articleDrug) {
$manufacturers = $articleDrug->getManufacturers();
$manufacturersArray = array();
if ($manufacturers) {
foreach ($manufacturers as $manufacturer) {
array_push($manufacturersArray, array('id' => $manufacturer->getId(), 'drugId' => $manufacturer->getDrugId(), 'name' => $manufacturer->getName(), 'address' => $manufacturer->getAddress()));
}
}
array_push($articleDrugsArray, array('id' => $articleDrug->getId(), 'type' => $articleDrug->getType(), 'name' => $articleDrug->getName(), 'brandName' => $articleDrug->getBrandName(), 'administration' => $articleDrug->getAdministration(), 'otherAdministration' => $articleDrug->getOtherAdministration(), 'form' => $articleDrug->getForm(), 'otherForm' => $articleDrug->getOtherForm(), 'strength' => $articleDrug->getStrength(), 'storage' => $articleDrug->getStorage(), 'pharmaClass' => $articleDrug->getPharmaClass(), 'studyClasses' => $articleDrug->getClassesArray(), 'countries' => $articleDrug->getCountriesArray(), 'conditionsOfUse' => $articleDrug->getDifferentConditionsOfUse(), 'cpr' => $articleDrug->getCPR(), 'drugRegistrationNumber' => $articleDrug->getDrugRegistrationNumber(), 'importedQuantity' => $articleDrug->getImportedQuantity(), 'manufacturers' => $manufacturersArray));
}
}
$this->_data = array('articleDrugs' => $articleDrugsArray);
}
return parent::initData();
}
