/**
* Constructor.
*/
function MetadataForm($paper)
{
$roleDao =& DAORegistry::getDAO('RoleDAO');
$schedConf =& Request::getSchedConf();
$user =& Request::getUser();
$roleId = $roleDao->getRoleIdFromPath(Request::getRequestedPage());
// If the user is a director of this paper, make the form editable.
$this->canEdit = false;
if ($roleId != null && ($roleId == ROLE_ID_DIRECTOR || $roleId == ROLE_ID_TRACK_DIRECTOR)) {
$this->canEdit = true;
}
// Check if the author can modify metadata.
if ($roleId == ROLE_ID_AUTHOR) {
if (AuthorAction::mayEditPaper($paper)) {
$this->canEdit = true;
}
}
if ($this->canEdit) {
parent::Form('submission/metadata/metadataEdit.tpl');
$this->addCheck(new FormValidatorLocale($this, 'title', 'required', 'author.submit.form.titleRequired'));
$this->addCheck(new FormValidatorArray($this, 'authors', 'required', 'author.submit.form.authorRequiredFields', array('firstName', 'lastName')));
$this->addCheck(new FormValidatorArrayCustom($this, 'authors', 'required', 'author.submit.form.authorRequiredFields', create_function('$email, $regExp', 'return String::regexp_match($regExp, $email);'), array(ValidatorEmail::getRegexp()), false, array('email')));
$this->addCheck(new FormValidatorArrayCustom($this, 'authors', 'required', 'user.profile.form.urlInvalid', create_function('$url, $regExp', 'return empty($url) ? true : String::regexp_match($regExp, $url);'), array(ValidatorUrl::getRegexp()), false, array('url')));
} else {
parent::Form('submission/metadata/metadataView.tpl');
}
// If the user is a reviewer of this paper, do not show authors.
$this->canViewAuthors = true;
if ($roleId != null && $roleId == ROLE_ID_REVIEWER) {
$this->canViewAuthors = false;
}
$this->paper = $paper;
$this->addCheck(new FormValidatorPost($this));
}
/**
* Save changes to paper.
*/
function execute()
{
$paperDao =& DAORegistry::getDAO('PaperDAO');
$reviewAssignmentDao =& DAORegistry::getDAO('ReviewAssignmentDAO');
$conference = Request::getConference();
$schedConf = Request::getSchedConf();
// Update paper
$paper =& $this->paper;
$paper->setDateSubmitted(Core::getCurrentDate());
$paper->setSubmissionProgress(0);
$paper->stampStatusModified();
// We've collected the paper now -- bump the review progress
if ($this->paper->getSubmissionFileId() != null) {
$paper->setCurrentStage(REVIEW_STAGE_PRESENTATION);
}
$paperDao->updatePaper($paper);
// Designate this as the review version by default.
$authorSubmissionDao =& DAORegistry::getDAO('AuthorSubmissionDAO');
$authorSubmission =& $authorSubmissionDao->getAuthorSubmission($paper->getId());
AuthorAction::designateReviewVersion($authorSubmission);
unset($authorSubmission);
// Update any review assignments so they may access the file
$authorSubmission =& $authorSubmissionDao->getAuthorSubmission($paper->getId());
$reviewAssignments =& $reviewAssignmentDao->getReviewAssignmentsByPaperId($paper->getId(), REVIEW_STAGE_PRESENTATION);
foreach ($reviewAssignments as $reviewAssignment) {
$reviewAssignment->setReviewFileId($authorSubmission->getReviewFileId());
$reviewAssignmentDao->updateReviewAssignment($reviewAssignment);
}
$reviewMode = $authorSubmission->getReviewMode();
$user =& Request::getUser();
if ($reviewMode == REVIEW_MODE_BOTH_SIMULTANEOUS || $reviewMode == REVIEW_MODE_PRESENTATIONS_ALONE) {
// Editors have not yet been assigned; assign them.
$this->assignDirectors($paper);
}
$this->confirmSubmission($paper, $user, $schedConf, $conference, $reviewMode == REVIEW_MODE_BOTH_SEQUENTIAL ? 'SUBMISSION_UPLOAD_ACK' : 'SUBMISSION_ACK');
// 同時寄一封給大會主席
$this->confirmSubmissionBBC($paper, $user, $schedConf, $conference, $reviewMode == REVIEW_MODE_BOTH_SEQUENTIAL ? 'SUBMISSION_UPLOAD_ACK_BCC' : 'SUBMISSION_ACK_BCC');
import('paper.log.PaperLog');
import('paper.log.PaperEventLogEntry');
PaperLog::logEvent($this->paperId, PAPER_LOG_PRESENTATION_SUBMIT, LOG_TYPE_AUTHOR, $user->getId(), 'log.author.presentationSubmitted', array('submissionId' => $paper->getId(), 'authorName' => $user->getFullName()));
return $this->paperId;
}
/**
* For upgrade to 2.1.1: Designate original versions as review versions
* in all cases where review versions aren't designated. (#2144)
* @return boolean
*/
function designateReviewVersions()
{
$journalDao =& DAORegistry::getDAO('JournalDAO');
$articleDao =& DAORegistry::getDAO('ArticleDAO');
$authorSubmissionDao =& DAORegistry::getDAO('AuthorSubmissionDAO');
import('classes.submission.author.AuthorAction');
$journals =& $journalDao->getJournals();
while ($journal =& $journals->next()) {
$articles =& $articleDao->getArticlesByJournalId($journal->getId());
while ($article =& $articles->next()) {
if (!$article->getReviewFileId() && $article->getSubmissionProgress() == 0) {
$authorSubmission =& $authorSubmissionDao->getAuthorSubmission($article->getId());
AuthorAction::designateReviewVersion($authorSubmission, true);
}
unset($article);
}
unset($journal);
}
return true;
}
/**
* View a file (inlines file).
* @param $args array ($articleId, $fileId, [$revision])
*/
function viewFile($args)
{
$articleId = isset($args[0]) ? $args[0] : 0;
$fileId = isset($args[1]) ? $args[1] : 0;
$revision = isset($args[2]) ? $args[2] : null;
$this->validate($articleId);
if (!AuthorAction::viewFile($articleId, $fileId, $revision)) {
Request::redirect(null, null, 'submission', $articleId);
}
}
/**
* Delete comment.
* @param $args array
* @param $request PKPRequest
*/
function deleteComment($args, $request)
{
$articleId = (int) array_shift($args);
$commentId = (int) array_shift($args);
$this->addCheck(new HandlerValidatorSubmissionComment($this, $commentId));
$this->validate($request, $articleId);
$this->setupTemplate($request, true);
AuthorAction::deleteComment($commentId);
// Redirect back to initial comments page
if ($this->comment->getCommentType() == COMMENT_TYPE_EDITOR_DECISION) {
$request->redirect(null, null, 'viewEditorDecisionComments', $articleId);
} else {
if ($this->comment->getCommentType() == COMMENT_TYPE_COPYEDIT) {
$request->redirect(null, null, 'viewCopyeditComments', $articleId);
} else {
if ($this->comment->getCommentType() == COMMENT_TYPE_LAYOUT) {
$request->redirect(null, null, 'viewLayoutComments', $articleId);
} else {
if ($this->comment->getCommentType() == COMMENT_TYPE_PROOFREAD) {
$request->redirect(null, null, 'viewProofreadComments', $articleId);
}
}
}
}
}
/**
* Delete comment.
*/
function deleteComment($args)
{
$articleId = $args[0];
$commentId = $args[1];
$this->addCheck(new HandlerValidatorSubmissionComment($this, $commentId));
$this->validate();
$comment =& $this->comment;
$this->setupTemplate(true);
$trackSubmissionHandler = new TrackSubmissionHandler();
$trackSubmissionHandler->validate($articleId);
$authorSubmission =& $trackSubmissionHandler->submission;
AuthorAction::deleteComment($commentId);
// Redirect back to initial comments page
if ($comment->getCommentType() == COMMENT_TYPE_SECTION_DECISION) {
Request::redirect(null, null, 'viewEditorDecisionComments', $articleId);
} else {
if ($comment->getCommentType() == COMMENT_TYPE_COPYEDIT) {
Request::redirect(null, null, 'viewCopyeditComments', $articleId);
} else {
if ($comment->getCommentType() == COMMENT_TYPE_LAYOUT) {
Request::redirect(null, null, 'viewLayoutComments', $articleId);
} else {
if ($comment->getCommentType() == COMMENT_TYPE_PROOFREAD) {
Request::redirect(null, null, 'viewProofreadComments', $articleId);
}
}
}
}
}
/**
* Delete comment.
*/
function deleteComment($args)
{
AuthorHandler::validate();
AuthorHandler::setupTemplate(true);
$articleId = $args[0];
$commentId = $args[1];
$articleCommentDao =& DAORegistry::getDAO('ArticleCommentDAO');
$comment =& $articleCommentDao->getArticleCommentById($commentId);
list($journal, $authorSubmission) = TrackSubmissionHandler::validate($articleId);
list($comment) = SubmissionCommentsHandler::validate($commentId);
AuthorAction::deleteComment($commentId);
// Redirect back to initial comments page
if ($comment->getCommentType() == COMMENT_TYPE_EDITOR_DECISION) {
Request::redirect(null, null, 'viewEditorDecisionComments', $articleId);
} else {
if ($comment->getCommentType() == COMMENT_TYPE_COPYEDIT) {
Request::redirect(null, null, 'viewCopyeditComments', $articleId);
} else {
if ($comment->getCommentType() == COMMENT_TYPE_LAYOUT) {
Request::redirect(null, null, 'viewLayoutComments', $articleId);
} else {
if ($comment->getCommentType() == COMMENT_TYPE_PROOFREAD) {
Request::redirect(null, null, 'viewProofreadComments', $articleId);
}
}
}
}
}
/**
* Validate that the user is the author for the paper.
* Redirects to author index page if validation fails.
* @param $paperId int
* @param $requiresEditAccess boolean True means that the author must
* have edit access over the specified paper in order for
* validation to be successful.
* @param $isDeleting boolean True iff user is deleting a paper, and is not
* coming from an old URL (e.g. submission ack email)
*/
function validate($request, $paperId, $requiresEditAccess = false, $isDeleting = false)
{
parent::validate();
$authorSubmissionDao =& DAORegistry::getDAO('AuthorSubmissionDAO');
$roleDao =& DAORegistry::getDAO('RoleDAO');
$conference =& $request->getConference();
$schedConf =& $request->getSchedConf();
$user =& $request->getUser();
$isValid = true;
$authorSubmission =& $authorSubmissionDao->getAuthorSubmission($paperId);
if ($authorSubmission == null) {
$isValid = false;
} else {
if ($authorSubmission->getSchedConfId() != $schedConf->getId()) {
$isValid = false;
} else {
if ($authorSubmission->getUserId() != $user->getId()) {
$isValid = false;
}
}
}
if ($isValid && !$isDeleting) {
// The user may be coming in on an old URL e.g. from the submission
// ack email. If OCS is awaiting the completion of the submission,
// send them to the submit page.
if ($authorSubmission->getSubmissionProgress() != 0) {
$request->redirect(null, null, null, 'submit', array($authorSubmission->getSubmissionProgress()), array('paperId' => $authorSubmission->getId()));
}
}
if ($isValid && $requiresEditAccess) {
if (!AuthorAction::mayEditPaper($authorSubmission)) {
$isValid = false;
}
}
if (!$isValid) {
$request->redirect(null, null, $request->getRequestedPage());
}
$this->submission =& $authorSubmission;
return true;
}
/**
* Delete comment.
*/
function deleteComment($args)
{
$paperId = $args[0];
$commentId = $args[1];
$this->addCheck(new HandlerValidatorSubmissionComment($this, $commentId));
$this->validate();
$comment =& $this->comment;
$this->setupTemplate(true);
$trackSubmissionHandler = new TrackSubmissionHandler();
$trackSubmissionHandler->validate($paperId);
$authorSubmission =& $trackSubmissionHandler->submission;
AuthorAction::deleteComment($commentId);
// Redirect back to initial comments page
if ($comment->getCommentType() == COMMENT_TYPE_DIRECTOR_DECISION) {
Request::redirect(null, null, null, 'viewDirectorDecisionComments', $paperId);
}
}
/**
* Save settings.
*/
function execute()
{
$articleDao =& DAORegistry::getDAO('ArticleDAO');
$signoffDao =& DAORegistry::getDAO('SignoffDAO');
$sectionEditorSubmissionDao =& DAORegistry::getDAO('SectionEditorSubmissionDAO');
$application =& PKPApplication::getApplication();
$request =& $application->getRequest();
$user =& $request->getUser();
$router =& $request->getRouter();
$journal =& $router->getContext($request);
$article = new Article();
$article->setLocale($journal->getPrimaryLocale());
// FIXME in bug #5543
$article->setUserId($user->getId());
$article->setJournalId($journal->getId());
$article->setSectionId($this->getData('sectionId'));
$article->setLanguage(String::substr($journal->getPrimaryLocale(), 0, 2));
$article->setTitle($this->getData('title'), null);
// Localized
$article->setAbstract($this->getData('abstract'), null);
// Localized
$article->setDiscipline($this->getData('discipline'), null);
// Localized
$article->setSubjectClass($this->getData('subjectClass'), null);
// Localized
$article->setSubject($this->getData('subject'), null);
// Localized
$article->setCoverageGeo($this->getData('coverageGeo'), null);
// Localized
$article->setCoverageChron($this->getData('coverageChron'), null);
// Localized
$article->setCoverageSample($this->getData('coverageSample'), null);
// Localized
$article->setType($this->getData('type'), null);
// Localized
$article->setSponsor($this->getData('sponsor'), null);
// Localized
$article->setCitations($this->getData('citations'));
$article->setPages($this->getData('pages'));
// Set some default values so the ArticleDAO doesn't complain when adding this article
$article->setDateSubmitted(Core::getCurrentDate());
$article->setStatus(STATUS_PUBLISHED);
$article->setSubmissionProgress(0);
$article->stampStatusModified();
$article->setCurrentRound(1);
$article->setFastTracked(1);
$article->setHideAuthor(0);
$article->setCommentsStatus(0);
// Insert the article to get it's ID
$articleDao->insertArticle($article);
$articleId = $article->getId();
// Add authors
$authors = $this->getData('authors');
for ($i = 0, $count = count($authors); $i < $count; $i++) {
if ($authors[$i]['authorId'] > 0) {
// Update an existing author
$author =& $article->getAuthor($authors[$i]['authorId']);
$isExistingAuthor = true;
} else {
// Create a new author
$author = new Author();
$isExistingAuthor = false;
}
if ($author != null) {
$author->setSubmissionId($articleId);
$author->setFirstName($authors[$i]['firstName']);
$author->setMiddleName($authors[$i]['middleName']);
$author->setLastName($authors[$i]['lastName']);
if (array_key_exists('affiliation', $authors[$i])) {
$author->setAffiliation($authors[$i]['affiliation'], null);
}
$author->setCountry($authors[$i]['country']);
$author->setEmail($authors[$i]['email']);
$author->setUrl($authors[$i]['url']);
if (array_key_exists('competingInterests', $authors[$i])) {
$author->setCompetingInterests($authors[$i]['competingInterests'], null);
}
$author->setBiography($authors[$i]['biography'], null);
$author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0);
$author->setSequence($authors[$i]['seq']);
if ($isExistingAuthor == false) {
$article->addAuthor($author);
}
}
}
// Add the submission files as galleys
import('classes.file.TemporaryFileManager');
import('classes.file.ArticleFileManager');
$tempFileIds = $this->getData('tempFileId');
$temporaryFileManager = new TemporaryFileManager();
$articleFileManager = new ArticleFileManager($articleId);
foreach (array_keys($tempFileIds) as $locale) {
$temporaryFile = $temporaryFileManager->getFile($tempFileIds[$locale], $user->getId());
$fileId = null;
if ($temporaryFile) {
$fileId = $articleFileManager->temporaryFileToArticleFile($temporaryFile, ARTICLE_FILE_SUBMISSION);
$fileType = $temporaryFile->getFileType();
if (strstr($fileType, 'html')) {
import('classes.article.ArticleHTMLGalley');
$galley = new ArticleHTMLGalley();
} else {
import('classes.article.ArticleGalley');
$galley = new ArticleGalley();
}
$galley->setArticleId($articleId);
$galley->setFileId($fileId);
$galley->setLocale($locale);
if ($galley->isHTMLGalley()) {
$galley->setLabel('HTML');
} else {
if (strstr($fileType, 'pdf')) {
$galley->setLabel('PDF');
} else {
if (strstr($fileType, 'postscript')) {
$galley->setLabel('Postscript');
} else {
if (strstr($fileType, 'xml')) {
$galley->setLabel('XML');
} else {
$galley->setLabel(__('common.untitled'));
}
}
}
}
$galleyDao =& DAORegistry::getDAO('ArticleGalleyDAO');
$galleyDao->insertGalley($galley);
}
if ($locale == $journal->getPrimaryLocale()) {
$article->setSubmissionFileId($fileId);
$article->SetReviewFileId($fileId);
}
// Update file search index
import('classes.search.ArticleSearchIndex');
if (isset($galley)) {
ArticleSearchIndex::updateFileIndex($galley->getArticleId(), ARTICLE_SEARCH_GALLEY_FILE, $galley->getFileId());
}
}
// Designate this as the review version by default.
$authorSubmissionDao =& DAORegistry::getDAO('AuthorSubmissionDAO');
$authorSubmission =& $authorSubmissionDao->getAuthorSubmission($articleId);
import('classes.submission.author.AuthorAction');
AuthorAction::designateReviewVersion($authorSubmission, true);
// Accept the submission
$sectionEditorSubmission =& $sectionEditorSubmissionDao->getSectionEditorSubmission($articleId);
$articleFileManager = new ArticleFileManager($articleId);
$sectionEditorSubmission->setReviewFile($articleFileManager->getFile($article->getSubmissionFileId()));
import('classes.submission.sectionEditor.SectionEditorAction');
SectionEditorAction::recordDecision($sectionEditorSubmission, SUBMISSION_EDITOR_DECISION_ACCEPT);
// Create signoff infrastructure
$copyeditInitialSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_INITIAL', ASSOC_TYPE_ARTICLE, $articleId);
$copyeditAuthorSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_AUTHOR', ASSOC_TYPE_ARTICLE, $articleId);
$copyeditFinalSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_FINAL', ASSOC_TYPE_ARTICLE, $articleId);
$copyeditInitialSignoff->setUserId(0);
$copyeditAuthorSignoff->setUserId($user->getId());
$copyeditFinalSignoff->setUserId(0);
$signoffDao->updateObject($copyeditInitialSignoff);
$signoffDao->updateObject($copyeditAuthorSignoff);
$signoffDao->updateObject($copyeditFinalSignoff);
$layoutSignoff = $signoffDao->build('SIGNOFF_LAYOUT', ASSOC_TYPE_ARTICLE, $articleId);
$layoutSignoff->setUserId(0);
$signoffDao->updateObject($layoutSignoff);
$proofAuthorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_AUTHOR', ASSOC_TYPE_ARTICLE, $articleId);
$proofProofreaderSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_PROOFREADER', ASSOC_TYPE_ARTICLE, $articleId);
$proofLayoutEditorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_LAYOUT', ASSOC_TYPE_ARTICLE, $articleId);
$proofAuthorSignoff->setUserId($user->getId());
$proofProofreaderSignoff->setUserId(0);
$proofLayoutEditorSignoff->setUserId(0);
$signoffDao->updateObject($proofAuthorSignoff);
$signoffDao->updateObject($proofProofreaderSignoff);
$signoffDao->updateObject($proofLayoutEditorSignoff);
import('classes.author.form.submit.AuthorSubmitForm');
AuthorSubmitForm::assignEditors($article);
$articleDao->updateArticle($article);
// Add to end of editing queue
import('classes.submission.editor.EditorAction');
if (isset($galley)) {
EditorAction::expediteSubmission($article);
}
if ($this->getData('destination') == "issue") {
// Add to an existing issue
$issueId = $this->getData('issueId');
$this->scheduleForPublication($articleId, $issueId);
}
// Index article.
import('classes.search.ArticleSearchIndex');
ArticleSearchIndex::indexArticleMetadata($article);
// Import the references list.
$citationDao =& DAORegistry::getDAO('CitationDAO');
$rawCitationList = $article->getCitations();
$citationDao->importCitations($request, ASSOC_TYPE_ARTICLE, $articleId, $rawCitationList);
}
/**
* Save changes to article.
*/
function execute()
{
$articleDao =& DAORegistry::getDAO('ArticleDAO');
$journal = Request::getJournal();
// Update article
$article =& $this->article;
if ($this->getData('commentsToEditor') != '') {
$article->setCommentsToEditor($this->getData('commentsToEditor'));
}
$article->setDateSubmitted(Core::getCurrentDate());
$article->setSubmissionProgress(0);
$article->stampStatusModified();
$articleDao->updateArticle($article);
// Designate this as the review version by default.
$authorSubmissionDao =& DAORegistry::getDAO('AuthorSubmissionDAO');
$authorSubmission =& $authorSubmissionDao->getAuthorSubmission($article->getArticleId());
AuthorAction::designateReviewVersion($authorSubmission, true);
unset($authorSubmission);
// Create additional submission mangement records
$copyeditorSubmissionDao =& DAORegistry::getDAO('CopyeditorSubmissionDAO');
$copyeditorSubmission =& new CopyeditorSubmission();
$copyeditorSubmission->setArticleId($article->getArticleId());
$copyeditorSubmission->setCopyeditorId(0);
$copyeditorSubmissionDao->insertCopyeditorSubmission($copyeditorSubmission);
$layoutDao =& DAORegistry::getDAO('LayoutAssignmentDAO');
$layoutAssignment =& new LayoutAssignment();
$layoutAssignment->setArticleId($article->getArticleId());
$layoutAssignment->setEditorId(0);
$layoutDao->insertLayoutAssignment($layoutAssignment);
$proofAssignmentDao =& DAORegistry::getDAO('ProofAssignmentDAO');
$proofAssignment =& new ProofAssignment();
$proofAssignment->setArticleId($article->getArticleId());
$proofAssignment->setProofreaderId(0);
$proofAssignmentDao->insertProofAssignment($proofAssignment);
$sectionEditors = $this->assignEditors($article);
$user =& Request::getUser();
// Update search index
import('search.ArticleSearchIndex');
ArticleSearchIndex::indexArticleMetadata($article);
ArticleSearchIndex::indexArticleFiles($article);
// Send author notification email
import('mail.ArticleMailTemplate');
$mail =& new ArticleMailTemplate($article, 'SUBMISSION_ACK');
$mail->setFrom($journal->getSetting('contactEmail'), $journal->getSetting('contactName'));
if ($mail->isEnabled()) {
$mail->addRecipient($user->getEmail(), $user->getFullName());
// If necessary, BCC the acknowledgement to someone.
if ($journal->getSetting('copySubmissionAckPrimaryContact')) {
$mail->addBcc($journal->getSetting('contactEmail'), $journal->getSetting('contactName'));
}
if ($journal->getSetting('copySubmissionAckSpecified')) {
$copyAddress = $journal->getSetting('copySubmissionAckAddress');
if (!empty($copyAddress)) {
$mail->addBcc($copyAddress);
}
}
// Also BCC automatically assigned section editors
foreach ($sectionEditors as $sectionEditorEntry) {
$sectionEditor =& $sectionEditorEntry['user'];
$mail->addBcc($sectionEditor->getEmail(), $sectionEditor->getFullName());
unset($sectionEditor);
}
$mail->assignParams(array('authorName' => $user->getFullName(), 'authorUsername' => $user->getUsername(), 'editorialContactSignature' => $journal->getSetting('contactName') . "\n" . $journal->getJournalTitle(), 'submissionUrl' => Request::url(null, 'author', 'submission', $article->getArticleId())));
$mail->send();
}
import('article.log.ArticleLog');
import('article.log.ArticleEventLogEntry');
ArticleLog::logEvent($this->articleId, ARTICLE_LOG_ARTICLE_SUBMIT, ARTICLE_LOG_TYPE_AUTHOR, $user->getUserId(), 'log.author.submitted', array('submissionId' => $article->getArticleId(), 'authorName' => $user->getFullName()));
return $this->articleId;
}
/**
* View a file (inlines file).
* @param $args array ($articleId, $fileId, [$revision])
*/
function viewFile($args, $request)
{
$articleId = (int) array_shift($args);
$fileId = (int) array_shift($args);
$revision = (int) array_shift($args);
if (!$revision) {
$revision = null;
}
$this->validate($request, $articleId);
if (!AuthorAction::viewFile($articleId, $fileId, $revision)) {
$request->redirect(null, null, 'submission', $articleId);
}
}
/**
* View a file (inlines file).
* @param $args array ($paperId, $fileId, [$revision])
*/
function viewFile($args)
{
$paperId = (int) array_shift($args);
$fileId = (int) array_shift($args);
$revision = (int) array_shift($args);
$this->validate($paperId);
if (!AuthorAction::viewFile($paperId, $fileId, $revision)) {
Request::redirect(null, null, null, 'submission', $paperId);
}
}
/**
* Save changes to article.
*/
function execute()
{
$articleDao =& DAORegistry::getDAO('ArticleDAO');
$signoffDao =& DAORegistry::getDAO('SignoffDAO');
$sectionDao =& DAORegistry::getDAO('SectionDAO');
$ercReviewersDao =& DAORegistry::getDAO('ErcReviewersDAO');
$institutionDao =& DAORegistry::getDAO('InstitutionDAO');
$journal = Request::getJournal();
$user = Request::getUser();
// Update article
$article =& $this->article;
if ($article->getDateSubmitted() == null) {
$year = substr(Core::getCurrentDate(), 0, 4);
$countyear = $articleDao->getSubmissionsForYearCount($year) + 1;
$pSponsor = $article->getArticlePrimarySponsor();
$institution = $institutionDao->getInstitutionById($pSponsor->getInstitutionId());
$article->setProposalId($year . '-' . $countyear . '-' . $institution->getInstitutionAcronym());
}
if ($this->getData('commentsToEditor') != '') {
$article->setCommentsToEditor($this->getData('commentsToEditor'));
}
$article->setDateSubmitted(Core::getCurrentDate());
$article->setSubmissionProgress(0);
$article->stampStatusModified();
$articleDao->updateArticle($article);
// Designate this as the review version by default.
$authorSubmissionDao =& DAORegistry::getDAO('AuthorSubmissionDAO');
$authorSubmission =& $authorSubmissionDao->getAuthorSubmission($article->getId());
AuthorAction::designateReviewVersion($authorSubmission, true);
unset($authorSubmission);
$copyeditInitialSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_INITIAL', ASSOC_TYPE_ARTICLE, $article->getId());
$copyeditAuthorSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_AUTHOR', ASSOC_TYPE_ARTICLE, $article->getId());
$copyeditFinalSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_FINAL', ASSOC_TYPE_ARTICLE, $article->getId());
$copyeditInitialSignoff->setUserId(0);
$copyeditAuthorSignoff->setUserId($user->getId());
$copyeditFinalSignoff->setUserId(0);
$signoffDao->updateObject($copyeditInitialSignoff);
$signoffDao->updateObject($copyeditAuthorSignoff);
$signoffDao->updateObject($copyeditFinalSignoff);
$layoutSignoff = $signoffDao->build('SIGNOFF_LAYOUT', ASSOC_TYPE_ARTICLE, $article->getId());
$layoutSignoff->setUserId(0);
$signoffDao->updateObject($layoutSignoff);
$proofAuthorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_AUTHOR', ASSOC_TYPE_ARTICLE, $article->getId());
$proofProofreaderSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_PROOFREADER', ASSOC_TYPE_ARTICLE, $article->getId());
$proofLayoutEditorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_LAYOUT', ASSOC_TYPE_ARTICLE, $article->getId());
$proofAuthorSignoff->setUserId($user->getId());
$proofProofreaderSignoff->setUserId(0);
$proofLayoutEditorSignoff->setUserId(0);
$signoffDao->updateObject($proofAuthorSignoff);
$signoffDao->updateObject($proofProofreaderSignoff);
$signoffDao->updateObject($proofLayoutEditorSignoff);
$sectionEditorsDao =& DAORegistry::getDAO('SectionEditorsDAO');
$sectionEditors =& $sectionEditorsDao->getEditorsBySectionId($journal->getId(), $article->getSectionId());
$user =& Request::getUser();
// Update search index
import('classes.search.ArticleSearchIndex');
ArticleSearchIndex::indexArticleMetadata($article);
ArticleSearchIndex::indexArticleFiles($article);
// Send author notification email
import('classes.mail.ArticleMailTemplate');
$mail = new ArticleMailTemplate($article, null, 'SUBMISSION_ACK', null, null, null, false);
foreach ($sectionEditors as $sectionEditor) {
// If one of the secretary is the chair of the committee, send from the chair, if not, take the last secretary in the array
$from = $mail->getFrom();
if ($ercReviewersDao->isErcReviewer($journal->getId(), $sectionEditor->getId(), REVIEWER_CHAIR)) {
$mail->setFrom($sectionEditor->getEmail(), $sectionEditor->getFullName());
} elseif ($from['email'] == $user->getEmail()) {
$mail->setFrom($sectionEditor->getEmail(), $sectionEditor->getFullName());
}
$mail->addBcc($sectionEditor->getEmail(), $sectionEditor->getFullName());
unset($sectionEditor);
}
if ($mail->isEnabled()) {
$mail->addRecipient($user->getEmail(), $user->getFullName());
if ($journal->getSetting('copySubmissionAckSpecified')) {
$copyAddress = $journal->getSetting('copySubmissionAckAddress');
if (!empty($copyAddress)) {
$mail->addBcc($copyAddress);
}
}
$section = $sectionDao->getSection($article->getSectionId());
$mail->assignParams(array('authorName' => $user->getFullName(), 'authorUsername' => $user->getUsername(), 'address' => $sectionDao->getSettingValue($article->getSectionId(), 'address'), 'bankAccount' => $sectionDao->getSettingValue($article->getSectionId(), 'bankAccount'), 'proposalId' => $article->getProposalId(), 'submissionUrl' => Request::url(null, 'author', 'submission', $article->getId())));
$mail->send();
}
// Send a regular notification to section editors
$lastDecision = $article->getLastSectionDecision();
switch ($lastDecision->getReviewType()) {
case REVIEW_TYPE_INITIAL:
if ($lastDecision->getRound() == 1) {
$message = 'notification.type.articleSubmitted.initialReview';
} else {
$message = 'notification.type.articleReSubmitted.initialReview';
}
break;
case REVIEW_TYPE_PR:
if ($lastDecision->getRound() == 1) {
$message = 'notification.type.articleSubmitted.continuingReview';
} else {
$message = 'notification.type.articleReSubmitted.continuingReview';
}
break;
case REVIEW_TYPE_AMENDMENT:
if ($lastDecision->getRound() == 1) {
$message = 'notification.type.articleSubmitted.PAAmendmentReview';
} else {
$message = 'notification.type.articleReSubmitted.PAAmendmentReview';
}
break;
case REVIEW_TYPE_SAE:
if ($lastDecision->getRound() == 1) {
$message = 'notification.type.articleSubmitted.SAE';
} else {
$message = 'notification.type.articleReSubmitted.SAE';
}
break;
case REVIEW_TYPE_FR:
if ($lastDecision->getRound() == 1) {
$message = 'notification.type.articleSubmitted.EOS';
} else {
$message = 'notification.type.articleReSubmitted.EOS';
}
break;
}
import('lib.pkp.classes.notification.NotificationManager');
$notificationManager = new NotificationManager();
$url = Request::url($journal->getPath(), 'sectionEditor', 'submission', array($article->getId(), 'submissionReview'));
foreach ($sectionEditors as $sectionEditor) {
$notificationManager->createNotification($sectionEditor->getId(), $message, $article->getProposalId(), $url, 1, NOTIFICATION_TYPE_ARTICLE_SUBMITTED);
}
import('classes.article.log.ArticleLog');
import('classes.article.log.ArticleEventLogEntry');
if ($lastDecision->getRound() == 1) {
$message = 'log.author.submitted';
} else {
$message = 'log.author.resubmitted';
}
ArticleLog::logEvent($this->articleId, ARTICLE_LOG_ARTICLE_SUBMIT, ARTICLE_LOG_TYPE_AUTHOR, $user->getId(), $message, array('submissionId' => $article->getProposalId(), 'authorName' => $user->getFullName(), 'reviewType' => Locale::translate($lastDecision->getReviewTypeKey())));
return $this->articleId;
}
/**
* View a file (inlines file).
* @param $args array ($articleId, $fileId, [$revision])
*/
function viewFile($args)
{
$articleId = isset($args[0]) ? $args[0] : 0;
$fileId = isset($args[1]) ? $args[1] : 0;
$revision = isset($args[2]) ? $args[2] : null;
list($journal, $submission) = TrackSubmissionHandler::validate($articleId);
if (!AuthorAction::viewFile($articleId, $fileId, $revision)) {
Request::redirect(null, null, 'submission', $articleId);
}
}
/**
* Save settings.
*/
function execute()
{
$articleDao = DAORegistry::getDAO('ArticleDAO');
$signoffDao = DAORegistry::getDAO('SignoffDAO');
$sectionEditorSubmissionDao = DAORegistry::getDAO('SectionEditorSubmissionDAO');
$application = PKPApplication::getApplication();
$request = $this->request;
$user = $request->getUser();
$router = $request->getRouter();
$journal = $router->getContext($request);
$article = $articleDao->newDataObject();
$article->setLocale($journal->getPrimaryLocale());
// FIXME in bug #5543
$article->setUserId($user->getId());
$article->setJournalId($journal->getId());
$article->setSectionId($this->getData('sectionId'));
$article->setLanguage($this->getData('language'));
$article->setTitle($this->getData('title'), null);
// Localized
$article->setAbstract($this->getData('abstract'), null);
// Localized
$article->setDiscipline($this->getData('discipline'), null);
// Localized
$article->setSubjectClass($this->getData('subjectClass'), null);
// Localized
$article->setSubject($this->getData('subject'), null);
// Localized
$article->setCoverageGeo($this->getData('coverageGeo'), null);
// Localized
$article->setCoverageChron($this->getData('coverageChron'), null);
// Localized
$article->setCoverageSample($this->getData('coverageSample'), null);
// Localized
$article->setType($this->getData('type'), null);
// Localized
$article->setSponsor($this->getData('sponsor'), null);
// Localized
$article->setCitations($this->getData('citations'));
$article->setPages($this->getData('pages'));
// Set some default values so the ArticleDAO doesn't complain when adding this article
$article->setDateSubmitted(Core::getCurrentDate());
$article->setStatus(STATUS_PUBLISHED);
$article->setSubmissionProgress(0);
$article->stampStatusModified();
$article->setCurrentRound(1);
$article->setFastTracked(1);
$article->setHideAuthor(0);
$article->setCommentsStatus(0);
// Insert the article to get it's ID
$articleDao->insertObject($article);
$articleId = $article->getId();
// Add authors
$authors = $this->getData('authors');
for ($i = 0, $count = count($authors); $i < $count; $i++) {
if ($authors[$i]['authorId'] > 0) {
// Update an existing author
$author =& $authorDao->getAuthor($authors[$i]['authorId'], $articleId);
$isExistingAuthor = true;
} else {
// Create a new author
$author = new Author();
$isExistingAuthor = false;
}
if ($author != null) {
$author->setSubmissionId($articleId);
$author->setFirstName($authors[$i]['firstName']);
$author->setMiddleName($authors[$i]['middleName']);
$author->setLastName($authors[$i]['lastName']);
if (array_key_exists('affiliation', $authors[$i])) {
$author->setAffiliation($authors[$i]['affiliation'], null);
}
$author->setCountry($authors[$i]['country']);
$author->setEmail($authors[$i]['email']);
$author->setUrl($authors[$i]['url']);
if (array_key_exists('competingInterests', $authors[$i])) {
$author->setCompetingInterests($authors[$i]['competingInterests'], null);
}
$author->setBiography($authors[$i]['biography'], null);
$author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0);
$author->setSequence($authors[$i]['seq']);
if ($isExistingAuthor == false) {
$authorDao = DAORegistry::getDAO('AuthorDAO');
/* @var $authorDao AuthorDAO */
$authorDao->insertObject($author);
}
}
}
// Add the submission files as galleys
import('lib.pkp.classes.file.TemporaryFileManager');
import('classes.file.ArticleFileManager');
$tempFileIds = $this->getData('tempFileId');
$temporaryFileManager = new TemporaryFileManager();
$articleFileManager = new ArticleFileManager($articleId);
$designatedPrimary = false;
foreach (array_keys($tempFileIds) as $locale) {
$temporaryFile = $temporaryFileManager->getFile($tempFileIds[$locale], $user->getId());
$fileId = null;
if ($temporaryFile) {
$fileId = $articleFileManager->temporaryFileToArticleFile($temporaryFile, SUBMISSION_FILE_SUBMISSION);
$fileType = $temporaryFile->getFileType();
if (strstr($fileType, 'html')) {
import('classes.article.ArticleHTMLGalley');
$galley = new ArticleHTMLGalley();
} else {
import('classes.article.ArticleGalley');
$galley = new ArticleGalley();
}
$galley->setArticleId($articleId);
$galley->setFileId($fileId);
$galley->setLocale($locale);
if ($galley->isHTMLGalley()) {
$galley->setLabel('HTML');
} else {
if (strstr($fileType, 'pdf')) {
$galley->setLabel('PDF');
} else {
if (strstr($fileType, 'postscript')) {
$galley->setLabel('Postscript');
} else {
if (strstr($fileType, 'xml')) {
$galley->setLabel('XML');
} else {
$galley->setLabel(__('common.untitled'));
}
}
}
}
$galleyDao = DAORegistry::getDAO('ArticleGalleyDAO');
$galleyDao->insertGalley($galley);
if (!$designatedPrimary) {
$article->setSubmissionFileId($fileId);
if ($locale == $journal->getPrimaryLocale()) {
// Used to make sure that *some* file
// is designated Review Version, but
// preferrably the primary locale.
$designatedPrimary = true;
}
}
}
// Update file search index
import('classes.search.ArticleSearchIndex');
$articleSearchIndex = new ArticleSearchIndex();
if (isset($galley)) {
$articleSearchIndex->articleFileChanged($galley->getArticleId(), SUBMISSION_SEARCH_GALLEY_FILE, $galley->getFileId());
}
$articleSearchIndex->articleChangesFinished();
}
// Designate this as the review version by default.
$authorSubmissionDao = DAORegistry::getDAO('AuthorSubmissionDAO');
$authorSubmission =& $authorSubmissionDao->getAuthorSubmission($articleId);
import('classes.submission.author.AuthorAction');
AuthorAction::designateReviewVersion($authorSubmission, true);
// Accept the submission
$sectionEditorSubmission =& $sectionEditorSubmissionDao->getSectionEditorSubmission($articleId);
$articleFileManager = new ArticleFileManager($articleId);
import('classes.submission.sectionEditor.SectionEditorAction');
assert(false);
// FIXME: $decisionLabels missing from call below.
SectionEditorAction::recordDecision($this->request, $sectionEditorSubmission, SUBMISSION_EDITOR_DECISION_ACCEPT);
import('classes.author.form.submit.AuthorSubmitForm');
AuthorSubmitForm::assignEditors($article);
$articleDao->updateObject($article);
// Add to end of editing queue
import('classes.submission.editor.EditorAction');
if (isset($galley)) {
EditorAction::expediteSubmission($article, $this->request);
}
if ($this->getData('destination') == "issue") {
// Add to an existing issue
$issueId = $this->getData('issueId');
$this->scheduleForPublication($articleId, $issueId);
}
// Import the references list.
$citationDao = DAORegistry::getDAO('CitationDAO');
$rawCitationList = $article->getCitations();
$citationDao->importCitations($request, ASSOC_TYPE_ARTICLE, $articleId, $rawCitationList);
// Index article.
import('classes.search.ArticleSearchIndex');
$articleSearchIndex = new ArticleSearchIndex();
$articleSearchIndex->articleMetadataChanged($article);
$articleSearchIndex->articleChangesFinished();
}
/**
* Save changes to article.
*/
function execute()
{
$articleDao =& DAORegistry::getDAO('ArticleDAO');
$signoffDao =& DAORegistry::getDAO('SignoffDAO');
$journal = Request::getJournal();
$user = Request::getUser();
// Update article
$article =& $this->article;
if ($this->getData('commentsToEditor') != '') {
$article->setCommentsToEditor($this->getData('commentsToEditor'));
}
$article->setDateSubmitted(Core::getCurrentDate());
$article->setSubmissionProgress(0);
$article->stampStatusModified();
$articleDao->updateArticle($article);
// Designate this as the review version by default.
$authorSubmissionDao =& DAORegistry::getDAO('AuthorSubmissionDAO');
$authorSubmission =& $authorSubmissionDao->getAuthorSubmission($article->getId());
AuthorAction::designateReviewVersion($authorSubmission, true);
unset($authorSubmission);
$copyeditInitialSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_INITIAL', ASSOC_TYPE_ARTICLE, $article->getId());
$copyeditAuthorSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_AUTHOR', ASSOC_TYPE_ARTICLE, $article->getId());
$copyeditFinalSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_FINAL', ASSOC_TYPE_ARTICLE, $article->getId());
$copyeditInitialSignoff->setUserId(0);
$copyeditAuthorSignoff->setUserId($user->getId());
$copyeditFinalSignoff->setUserId(0);
$signoffDao->updateObject($copyeditInitialSignoff);
$signoffDao->updateObject($copyeditAuthorSignoff);
$signoffDao->updateObject($copyeditFinalSignoff);
$layoutSignoff = $signoffDao->build('SIGNOFF_LAYOUT', ASSOC_TYPE_ARTICLE, $article->getId());
$layoutSignoff->setUserId(0);
$signoffDao->updateObject($layoutSignoff);
$proofAuthorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_AUTHOR', ASSOC_TYPE_ARTICLE, $article->getId());
$proofProofreaderSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_PROOFREADER', ASSOC_TYPE_ARTICLE, $article->getId());
$proofLayoutEditorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_LAYOUT', ASSOC_TYPE_ARTICLE, $article->getId());
$proofAuthorSignoff->setUserId($user->getId());
$proofProofreaderSignoff->setUserId(0);
$proofLayoutEditorSignoff->setUserId(0);
$signoffDao->updateObject($proofAuthorSignoff);
$signoffDao->updateObject($proofProofreaderSignoff);
$signoffDao->updateObject($proofLayoutEditorSignoff);
$sectionEditors = $this->assignEditors($article);
$user =& Request::getUser();
// Update search index
import('classes.search.ArticleSearchIndex');
ArticleSearchIndex::indexArticleMetadata($article);
ArticleSearchIndex::indexArticleFiles($article);
// Send author notification email
import('classes.mail.ArticleMailTemplate');
$mail = new ArticleMailTemplate($article, 'SUBMISSION_ACK', null, null, null, false);
$mail->setFrom($journal->getSetting('contactEmail'), $journal->getSetting('contactName'));
if ($mail->isEnabled()) {
$mail->addRecipient($user->getEmail(), $user->getFullName());
// If necessary, BCC the acknowledgement to someone.
if ($journal->getSetting('copySubmissionAckPrimaryContact')) {
$mail->addBcc($journal->getSetting('contactEmail'), $journal->getSetting('contactName'));
}
if ($journal->getSetting('copySubmissionAckSpecified')) {
$copyAddress = $journal->getSetting('copySubmissionAckAddress');
if (!empty($copyAddress)) {
$mail->addBcc($copyAddress);
}
}
// Also BCC automatically assigned section editors
foreach ($sectionEditors as $sectionEditorEntry) {
$sectionEditor =& $sectionEditorEntry['user'];
$mail->addBcc($sectionEditor->getEmail(), $sectionEditor->getFullName());
unset($sectionEditor);
}
$mail->assignParams(array('authorName' => $user->getFullName(), 'authorUsername' => $user->getUsername(), 'editorialContactSignature' => $journal->getSetting('contactName') . "\n" . $journal->getLocalizedTitle(), 'submissionUrl' => Request::url(null, 'author', 'submission', $article->getId())));
$mail->send();
}
import('classes.article.log.ArticleLog');
import('classes.article.log.ArticleEventLogEntry');
ArticleLog::logEvent($this->articleId, ARTICLE_LOG_ARTICLE_SUBMIT, ARTICLE_LOG_TYPE_AUTHOR, $user->getId(), 'log.author.submitted', array('submissionId' => $article->getId(), 'authorName' => $user->getFullName()));
return $this->articleId;
}
/**
* Validate that the user is the author for the paper.
* Redirects to author index page if validation fails.
* @param $paperId int
* @param $requiresEditAccess boolean True means that the author must
* have edit access over the specified paper in order for
* validation to be successful.
* @param $isDeleting boolean True iff user is deleting a paper
*/
function validate($request, $paperId, $requiresEditAccess = false, $isDeleting = false)
{
parent::validate();
$authorSubmissionDao = DAORegistry::getDAO('AuthorSubmissionDAO');
$roleDao = DAORegistry::getDAO('RoleDAO');
$conference =& $request->getConference();
$schedConf =& $request->getSchedConf();
$user =& $request->getUser();
$isValid = true;
$authorSubmission =& $authorSubmissionDao->getAuthorSubmission($paperId);
if ($authorSubmission == null) {
$isValid = false;
} else {
if ($authorSubmission->getSchedConfId() != $schedConf->getId()) {
$isValid = false;
} else {
if ($authorSubmission->getUserId() != $user->getId()) {
$isValid = false;
}
}
}
if ($isValid && $requiresEditAccess) {
if (!AuthorAction::mayEditPaper($authorSubmission)) {
$isValid = false;
}
}
if (!$isValid) {
$request->redirect(null, null, $request->getRequestedPage());
}
$this->submission =& $authorSubmission;
return true;
}
