$ta_result = db_query("SELECT DISTINCT ACTARMCD, ACTARM from _hcvt2_dm");
if ($ta_result) {
$seq = 1;
while ($ta_row = db_fetch_assoc($ta_result)) {
if ($ta_row['ACTARMCD'] != '' && !in_array($ta_row['ACTARMCD'], array('NOTTRT', 'SCRNFAIL'))) {
$query[] = '(' .
fix_null($constants['STUDYID']) . ',' .
fix_null($constants['DOMAIN']) . ',' .
fix_null($ta_row['ACTARMCD']) . ',' .
fix_null($ta_row['ACTARM']) . ',' .
fix_null($seq) . ',' .
fix_null('TRT') . ',' .
fix_null('TREATMENT') . ',' .
fix_null('') . ',' .
fix_null('') . ',' .
fix_null('TREATMENT') .
')';
$seq++;
}
}
}
/**
* end Main Loop
*/
$timer['end_main'] = microtime(true);
/**
* if not exists, create your domain data table
*/
$table_create_query = "CREATE TABLE IF NOT EXISTS `$table_name` (
`STUDYID` VARCHAR(8) COLLATE utf8_unicode_ci NOT NULL,
`DOMAIN` VARCHAR(2) COLLATE utf8_unicode_ci NOT NULL DEFAULT 'DM',
//show_var($subj_val_array, 'SUBJ VAL', 'blue');
}
$seq = 1;
$constants['USUBJID'] = $constants['STUDYID'] . '-' . $subj_usubjid;
foreach ($subj_val_array AS $subj_array) {
$query[] = '(' .
fix_null($constants['STUDYID']) . ',' .
fix_null($constants['DOMAIN']) . ',' .
fix_null($constants['USUBJID']) . ',' .
fix_null($seq) . ',' .
fix_null($subj_array['vstestcd']) . ',' .
fix_null($subj_array['vstest']) . ',' .
fix_null($subj_array['vsorres']) . ',' . // vsorres
fix_null($subj_array['vsorresu']) . ',' .
fix_null($subj_array['vsorres']) . ',' . // vsstresn
fix_null($subj_array['vsdtc']) .
')';
$seq++;
}
}
$table_create_query = "CREATE TABLE IF NOT EXISTS `$table_name` (
`STUDYID` VARCHAR(8) COLLATE utf8_unicode_ci NOT NULL,
`DOMAIN` VARCHAR(2) COLLATE utf8_unicode_ci NOT NULL,
`USUBJID` VARCHAR(16) COLLATE utf8_unicode_ci NOT NULL,
`VSSEQ` CHAR(8) COLLATE utf8_unicode_ci DEFAULT NULL,
`VSTESTCD` VARCHAR(8) COLLATE utf8_unicode_ci DEFAULT NULL,
`VSTEST` VARCHAR(100) COLLATE utf8_unicode_ci DEFAULT NULL,
`VSORRES` VARCHAR(10) COLLATE utf8_unicode_ci DEFAULT NULL,
`VSORRESU` VARCHAR(12) COLLATE utf8_unicode_ci DEFAULT NULL,
`VSSTRESN` VARCHAR(10) COLLATE utf8_unicode_ci DEFAULT NULL,
`VSDTC` VARCHAR(16) COLLATE utf8_unicode_ci DEFAULT NULL,
}
$seq = 1;
$constants['USUBJID'] = $constants['STUDYID'] . '-' . $subj_usubjid;
foreach ($subj_val_array AS $subj_array) {
$query[] = '(' .
fix_null($constants['STUDYID']) . ',' .
fix_null($constants['DOMAIN']) . ',' .
fix_null($constants['USUBJID']) . ',' .
fix_null($seq) . ',' .
fix_null($subj_array['sutrt']) . ',' . // sutrt
fix_null($subj_array['sutrt']) . ',' . // sucat
fix_null($subj_array['sutrt']) . ',' . // sudecod
fix_null($subj_array['sudosfrq']) . ',' .
fix_null($subj_array['suoccur']) . ',' .
fix_null($subj_array['sustdtc']) . ',' . // sustdtc
fix_null($subj_array['sustdtc']) .
')';
$seq++;
}
}
/**
* end Main Loop
*/
/**
* if not exists, create your domain data table
*/
$table_create_query = "CREATE TABLE IF NOT EXISTS `$table_name` (
`STUDYID` CHAR(8) COLLATE utf8_unicode_ci NOT NULL,
`DOMAIN` CHAR(2) COLLATE utf8_unicode_ci NOT NULL,
`USUBJID` CHAR(16) COLLATE utf8_unicode_ci NOT NULL,
`SUSEQ` CHAR(8) COLLATE utf8_unicode_ci DEFAULT NULL,
foreach ($vals_array as $subj_usubjid => $subj_val_array) {
//d($subj_val_array);
$seq = 1;
$constants['USUBJID'] = $constants['STUDYID'] . '-' . $subj_usubjid;
foreach ($subj_val_array AS $subj_array) {
if ($subj_array['dsterm'] != '') {
$query[] = '(' .
fix_null($constants['STUDYID']) . ',' .
fix_null($constants['DOMAIN']) . ',' .
fix_null($constants['USUBJID']) . ',' .
fix_null($seq) . ',' .
fix_null($subj_array['dsterm']) . ',' .
fix_null($subj_array['dsdecod']). ',' .
fix_null($subj_array['dsstdtc']) . ',' .
fix_null($subj_array['dsstdy']) . ',' .
fix_null($subj_array['dscat']) .
')';
$seq++;
}
}
}
$table_create_query = "CREATE TABLE IF NOT EXISTS `$table_name` (
`STUDYID` VARCHAR(8) COLLATE utf8_unicode_ci NOT NULL,
`DOMAIN` VARCHAR(2) COLLATE utf8_unicode_ci NOT NULL,
`USUBJID` VARCHAR(16) COLLATE utf8_unicode_ci NOT NULL,
`DSSEQ` CHAR(8) COLLATE utf8_unicode_ci DEFAULT NULL,
`DSTERM` CHAR(200) COLLATE utf8_unicode_ci DEFAULT NULL,
`DSDECOD` VARCHAR(100) COLLATE utf8_unicode_ci DEFAULT NULL,
`DSSTDTC` VARCHAR(16) COLLATE utf8_unicode_ci DEFAULT NULL,
`DSSTDY` VARCHAR(4) COLLATE utf8_unicode_ci DEFAULT NULL,
`DSCAT` VARCHAR(40) COLLATE utf8_unicode_ci DEFAULT NULL,
* Main loop
*/
foreach ($vals_array as $subj_usubjid => $subj_val_array) {
//d($subj_val_array);
$seq = 1;
$constants['USUBJID'] = $constants['STUDYID'] . '-' . $subj_usubjid;
foreach ($subj_val_array AS $subj_array) {
if ($subj_array['coval'] != '') {
$query[] = '(' .
fix_null($constants['STUDYID']) . ',' .
fix_null($constants['DOMAIN']) . ',' .
fix_null($constants['USUBJID']) . ',' .
fix_null($seq) . ',' .
fix_null(substr($subj_array['coval'], 0, 100)) . ',' .
fix_null($subj_array['coeval']) . ',' .
fix_null($subj_array['codtc']) .
')';
$seq++;
}
}
}
$timer['end_main'] = microtime(true);
/**
* end Main Loop
*/
$table_create_query = "CREATE TABLE IF NOT EXISTS `$table_name` (
`STUDYID` VARCHAR(8) COLLATE utf8_unicode_ci NOT NULL,
`DOMAIN` VARCHAR(2) COLLATE utf8_unicode_ci NOT NULL,
`USUBJID` VARCHAR(16) COLLATE utf8_unicode_ci NOT NULL,
`COSEQ` CHAR(8) COLLATE utf8_unicode_ci DEFAULT NULL,
`COVAL` VARCHAR(100) COLLATE utf8_unicode_ci DEFAULT NULL,
$llt = $subj_array['mhmodify'] != '' ? $subj_array['mhmodify'] : get_llt($subj_array['mhterm']);
$pt = get_pt($llt);
$soc = get_bodsys($pt);
$query[] = '(' .
fix_null($constants['STUDYID']) . ',' .
fix_null($constants['DOMAIN']) . ',' .
fix_null($constants['USUBJID']) . ',' .
fix_null($seq) . ',' .
fix_null($subj_array['mhterm']) . ',' .
fix_null($llt) . ',' .
fix_null($pt) . ',' .
fix_null($soc) . ',' .
fix_null($subj_array['mhoccur']) . ',' .
fix_null($subj_array['mhpresp']) . ',' .
fix_null($subj_array['mhstdtc']) . ',' .
fix_null($subj_array['mhstdtc']) .
')';
$seq++;
}
}
}
$table_create_query = "CREATE TABLE IF NOT EXISTS `$table_name` (
`STUDYID` CHAR(8) COLLATE utf8_unicode_ci NOT NULL,
`DOMAIN` CHAR(2) COLLATE utf8_unicode_ci NOT NULL,
`USUBJID` CHAR(16) COLLATE utf8_unicode_ci NOT NULL,
`MHSEQ` CHAR(8) COLLATE utf8_unicode_ci DEFAULT NULL,
`MHTERM` VARCHAR(100) COLLATE utf8_unicode_ci DEFAULT NULL,
`MHMODIFY` VARCHAR(100) COLLATE utf8_unicode_ci DEFAULT NULL,
`MHDECOD` VARCHAR(100) COLLATE utf8_unicode_ci DEFAULT NULL,
`MHBODSYS` VARCHAR(200) COLLATE utf8_unicode_ci DEFAULT NULL,
`MHOCCUR` CHAR(1) COLLATE utf8_unicode_ci DEFAULT NULL,
$constants['USUBJID'] = $constants['STUDYID'] . '-' . $subj_usubjid;
foreach ($subj_val_array AS $subj_array) {
if ($subj_array['faorres'] != '') {
$query[] = '(' .
fix_null($constants['STUDYID']) . ',' .
fix_null($constants['DOMAIN']) . ',' .
fix_null($constants['USUBJID']) . ',' .
fix_null($seq) . ',' .
fix_null($subj_array['fatestcd']) . ',' .
fix_null($subj_array['fatest']) . ',' .
fix_null($subj_array['faorres']) . ',' .
fix_null($subj_array['fastresc']) . ',' .
fix_null($subj_array['fastresn']) . ',' .
fix_null(fix_case($subj_array['facat'])) . ',' .
fix_null($subj_array['faobj']) . ',' .
fix_null($subj_array['fadtc']) .
')';
$seq++;
}
}
}
$timer['end_main'] = microtime(true);
/**
* end Main Loop
*/
$table_create_query = "CREATE TABLE IF NOT EXISTS `$table_name` (
`STUDYID` VARCHAR(8) COLLATE utf8_unicode_ci NOT NULL,
`DOMAIN` VARCHAR(2) COLLATE utf8_unicode_ci NOT NULL,
`USUBJID` VARCHAR(16) COLLATE utf8_unicode_ci NOT NULL,
`FASEQ` CHAR(8) COLLATE utf8_unicode_ci DEFAULT NULL,
`FATESTCD` VARCHAR(8) COLLATE utf8_unicode_ci DEFAULT NULL,
}
} else {
error_log(db_error() . "\n");
d($other_drug, db_error());
}
}
/**
* process all drugs in $drugs_out to populate table
*/
d($drugs_out);
if (!empty($drugs_out)) {
foreach ($drugs_out AS $drug_out => $other_drug) {
$query[] = '(' .
fix_null('vpk') . ',' .
fix_null($drug_out) . ',' .
fix_null($other_drug) .
')';
}
$sql .= implode(",\n", $query);
}
!d($sql);
if (!$debug) {
if (db_query($sql)) {
d('INSERT successful');
} else {
error_log("SQL INSERT FAILED: " . db_error() . "\n");
d(db_error());
}
}
$timer['main_end'] = microtime(true);
$init_time = benchmark_timing($timer);
$seq = 1;
$constants['USUBJID'] = $constants['STUDYID'] . '-' . $subj_usubjid;
foreach ($subj_val_array AS $subj_array) {
if (isset($subj_array['svstdtc'])) {
$query[] = '(' .
fix_null($constants['STUDYID']) . ',' .
fix_null($constants['DOMAIN']) . ',' .
fix_null($constants['USUBJID']) . ',' .
fix_null($seq) . ',' .
fix_null($subj_array['visit']) . ',' .
fix_null($subj_array['visitdy']) . ',' .
fix_null($subj_array['svstdtc']) . ',' .
fix_null($subj_array['svstdtc']) . ',' .
fix_null($subj_array['svstdy']) . ',' .
fix_null($subj_array['svstdy']) . ',' .
fix_null($subj_array['svupdes']) .
')';
$seq++;
}
}
}
if ($subjects != '') {
d($query);
}
/**
* end Main Loop
*/
$timer['end_main'] = microtime(true);
/**
* if not exists, create your domain data table
*/
fix_null($meddra['aebdsycd']) . ',' . fix_null(fix_case($subj_array['aesev'])) . ',' . fix_null($subj_array['aeser']) . ',' . fix_null(fix_case($subj_array['aeacn'])) . ',' . fix_null(fix_case($subj_array['aerel'])) . ',' . fix_null(fix_case($subj_array['aeout'])) . ',' . fix_null($subj_array['aescong']) . ',' . fix_null($subj_array['aesdisab']) . ',' . fix_null($subj_array['aesdth']) . ',' . fix_null($subj_array['aeshosp']) . ',' . fix_null($subj_array['aeslife']) . ',' . fix_null($subj_array['aesmie']) . ',' . fix_null($subj_array['aecontrt']) . ',' . fix_null($subj_array['aetoxgr']) . ',' . fix_null($subj_array['aestdtc']) . ',' . fix_null($subj_array['aeendtc']) . ')'; $seq++; } } } /** * end Main Loop */ $timer['end_main'] = microtime(true); /** * if not exists, create your domain data table */ $table_create_query = "CREATE TABLE IF NOT EXISTS `$table_name` ( `STUDYID` CHAR(8) COLLATE utf8_unicode_ci NOT NULL, `DOMAIN` CHAR(2) COLLATE utf8_unicode_ci NOT NULL DEFAULT 'AE',
$seq = 1;
$constants['USUBJID'] = $constants['STUDYID'] . '-' . $subj_usubjid;
foreach ($subj_val_array AS $subj_array) {
if ($subj_array['exstdtc'] != '') {
$query[] = '(' .
fix_null($constants['STUDYID']) . ',' .
fix_null($constants['DOMAIN']) . ',' .
fix_null($constants['USUBJID']) . ',' .
fix_null($seq) . ',' .
fix_null($subj_array['extrt']) . ',' . // extrt
fix_null($subj_array['extrt']) . ',' . // exdecod
fix_null($subj_array['exdose']) . ',' .
fix_null($subj_array['exdosu']) . ',' .
fix_null($subj_array['exdosfrq']) . ',' .
fix_null($subj_array['exstdtc']) . ',' .
fix_null($subj_array['exendtc']) .
')';
$seq++;
}
}
}
$timer['end_fields'] = microtime(true);
$table_create_query = "CREATE TABLE IF NOT EXISTS `$table_name` (
`STUDYID` varchar(8) COLLATE utf8_unicode_ci NOT NULL,
`DOMAIN` varchar(2) COLLATE utf8_unicode_ci NOT NULL DEFAULT 'EX',
`USUBJID` varchar(16) COLLATE utf8_unicode_ci NOT NULL,
`EXSEQ` int(8) DEFAULT NULL,
`EXTRT` varchar(100) COLLATE utf8_unicode_ci DEFAULT NULL,
`EXDECOD` varchar(100) COLLATE utf8_unicode_ci DEFAULT NULL,
`EXDOSE` varchar(20) COLLATE utf8_unicode_ci DEFAULT NULL,
`EXDOSU` varchar(16) COLLATE utf8_unicode_ci DEFAULT NULL,
*/
$subj_values_query = $values_query . "AND a.record = '{$main_row['subjid']}'";
$subj_values_result = db_query($subj_values_query);
if ($subj_values_result) {
while ($vals = db_fetch_assoc($subj_values_result)) {
if ($vals['IETESTCD'] != '') {
$query[] = '(' .
fix_null($constants['STUDYID']) . ',' .
fix_null($constants['DOMAIN']) . ',' .
fix_null($constants['USUBJID']) . ',' .
fix_null($seq) . ',' .
fix_null($vals['IETESTCD']) . ',' .
fix_null($vals['IETEST']) . ',' .
fix_null($vals['IECAT']) . ',' .
fix_null($vals['IEORRES']) . ',' .
fix_null($vals['IESTRESC']) .
')';
$seq++;
}
}
}
}
db_free_result($main_result);
}
/**
* end Main Loop
*/
/**
* if not exists, create your domain data table
*/
$table_create_query = "CREATE TABLE IF NOT EXISTS `$table_name` (
fix_null($constants['DOMAIN']) . ',' . fix_null($constants['USUBJID']) . ',' . fix_null($seq) . ',' . fix_null($subj_array['lbtestcd']) . ',' . fix_null($subj_array['lbtest']) . ',' . fix_null($subj_array['lborres']) . ',' . fix_null($subj_array['lborresu']) . ',' . fix_null($subj_array['lbstresc']) . ',' . fix_null($subj_array['lbstresn']) . ',' . fix_null($subj_array['lbstresu']) . ',' . fix_null($subj_array['lbstnrlo']) . ',' . fix_null($subj_array['lbstnrhi']) . ',' . fix_null($subj_array['lbnrind']) . ',' . fix_null($subj_array['lbdtc']) . ',' . fix_null(get_visit_num($sv_table_name, $constants['USUBJID'], $subj_array['lbdtc'])) . ',' . fix_null($subj_array['lbblfl']) . ')'; $seq++; } } } $timer['have_sql_array'] = microtime(true); $table_create_query = "CREATE TABLE IF NOT EXISTS `$table_name` ( `STUDYID` VARCHAR(8) COLLATE utf8_unicode_ci NOT NULL, `DOMAIN` VARCHAR(2) COLLATE utf8_unicode_ci NOT NULL, `USUBJID` VARCHAR(16) COLLATE utf8_unicode_ci NOT NULL, `LBSEQ` CHAR(8) COLLATE utf8_unicode_ci DEFAULT NULL, `LBTESTCD` VARCHAR(8) COLLATE utf8_unicode_ci DEFAULT NULL, `LBTEST` VARCHAR(40) COLLATE utf8_unicode_ci DEFAULT NULL, `LBORRES` VARCHAR(40) COLLATE utf8_unicode_ci DEFAULT NULL, `LBORRESU` VARCHAR(40) COLLATE utf8_unicode_ci DEFAULT NULL,
if ($meddra_result) {
$meddra = db_fetch_assoc($meddra_result);
db_free_result($meddra_result);
}
$query[] = '(' .
fix_null($constants['STUDYID']) . ',' .
fix_null($constants['DOMAIN']) . ',' .
fix_null($constants['USUBJID']) . ',' .
fix_null($seq) . ',' .
fix_null($subj_array['ceterm']) . ',' .
fix_null($meddra['aedecod']) . ',' .
fix_null($meddra['aesoc']) . ',' .
fix_null($subj_array['ceoccur']) . ',' .
fix_null($subj_array['cestdtc']) . ',' .
fix_null($subj_array['ceendtc']) . ',' .
fix_null('Y') .
')';
$seq++;
}
}
}
/**
* end Main Loop
*/
$timer['end_main'] = microtime(true);
/**
* if not exists, create your domain data table
*/
$table_create_query = "CREATE TABLE IF NOT EXISTS `$table_name` (
`STUDYID` CHAR(8) COLLATE utf8_unicode_ci NOT NULL,
`DOMAIN` CHAR(2) COLLATE utf8_unicode_ci NOT NULL,
foreach ($subj_val_array AS $subj_array) {
if ($subj_array['cmtrt'] != '') {
$query[] = '(' .
fix_null($constants['STUDYID']) . ',' .
fix_null($constants['DOMAIN']) . ',' .
fix_null($constants['USUBJID']) . ',' .
fix_null($seq) . ',' .
fix_null($subj_array['cmtrt']) . ',' .
fix_null($subj_array['cmcat']) . ',' .
fix_null($subj_array['cmdecod']) . ',' .
fix_null($subj_array['cmindc']) . ',' .
fix_null($subj_array['cmdose']) . ',' .
fix_null($subj_array['cmdosu']) . ',' .
fix_null($subj_array['cmdosfrq']) . ',' .
fix_null($subj_array['cmstdtc']) . ',' .
fix_null($subj_array['cmendtc']) .
')';
$seq++;
}
}
}
$timer['end_fields'] = microtime(true);
$table_create_query = "CREATE TABLE IF NOT EXISTS `$table_name` (
`STUDYID` VARCHAR(8) COLLATE utf8_unicode_ci NOT NULL,
`DOMAIN` VARCHAR(2) COLLATE utf8_unicode_ci NOT NULL DEFAULT 'CM',
`USUBJID` VARCHAR(16) COLLATE utf8_unicode_ci NOT NULL,
`CMSEQ` CHAR(8) COLLATE utf8_unicode_ci DEFAULT NULL,
`CMTRT` VARCHAR(100) COLLATE utf8_unicode_ci DEFAULT NULL,
`CMCAT` VARCHAR(100) COLLATE utf8_unicode_ci DEFAULT NULL,
`CMDECOD` VARCHAR(100) COLLATE utf8_unicode_ci DEFAULT NULL,
`CMINDC` VARCHAR(100) COLLATE utf8_unicode_ci DEFAULT NULL,
fix_null($constants['DOMAIN']) . ',' . fix_null($constants['USUBJID']) . ',' . fix_null($subj_array['SUBJID']) . ',' . fix_null($subj_array['RFSTDTC']) . ',' . fix_null($subj_array['RFENDTC']) . ',' . fix_null($constants['SITEID']) . ',' . fix_null($subj_array['BRTHDTC']) . ',' . fix_null($subj_array['AGE']) . ',' . fix_null($subj_array['SEX']) . ',' . fix_null(fix_case($subj_array['RACE'])) . ',' . fix_null(fix_case($subj_array['ETHNIC'])) . ',' . fix_null($subj_array['armcd']) . ',' . fix_null($subj_array['arm']) . ',' . fix_null($subj_array['actarmcd']) . ',' . fix_null($subj_array['actarm']) . ',' . fix_null($constants['COUNTRY']) . ')'; $seq++; } } /** * end Main Loop */ $timer['end_main'] = microtime(true); /** * if not exists, create your domain data table */ $table_create_query = "CREATE TABLE IF NOT EXISTS `$table_name` ( `STUDYID` CHAR(8) COLLATE utf8_unicode_ci NOT NULL, `DOMAIN` CHAR(2) COLLATE utf8_unicode_ci NOT NULL DEFAULT 'DM', `USUBJID` CHAR(16) COLLATE utf8_unicode_ci NOT NULL,
