function baseineStatus($version, $baseline, $component, $runtype)
{
$pass = $fail = $abort = $other = 0;
$state = extractVersion($baseline, 2);
$status = array();
$runtype = $state[4];
$sql = 'SELECT caseID, ' . $version . ' as version from baseline_cases_' . $runtype . ' where componentID = ' . $component . ' order by caseID;';
$result = mysql_query($sql);
while ($row = mysql_fetch_assoc($result)) {
$caseID = $row[caseID];
$status[$caseID] = $row['version'];
}
foreach ($status as $id => $value) {
$basic = extractVersion($value, 2);
$runtypeall = $basic[4];
if ($runtypeall == $runtype) {
switch ($basic[1]) {
case "PASSED":
$pass = $pass + 1;
continue;
case "FAILED":
$fail = $fail + 1;
continue;
case "ABORTED":
$abort = $abort + 1;
continue;
default:
$other = $other + 1;
continue;
}
}
}
$version = extractVersion($version, 1);
$sql = 'UPDATE baseline SET pass = '******' ,fail =' . $fail . ', abort = ' . $abort . ', skip = ' . $other . ' where version = \'' . $version . '\' and componentID = ' . $component . ' and moduletype = \'' . $runtype . '\';';
mysql_unbuffered_query($sql);
}
$p = "/\\/\\/.*?/";
$p2 = preg_split($p, $p1[1]);
$rm = $p2[0];
//remove numbers
$rm = str_replace(range(0, 9), "", $rm);
//remove newlines
$rm = trim(str_replace("\n", "", $rm));
//remove spaces
$rm = preg_replace("/\\s\\s+/", "", $rm);
$rm = preg_replace("/\\s/", "", $rm);
$rm = strtoupper($rm);
}
return $rm;
}
function extractFeaturesRaw($gb_str)
{
$rm = null;
$p = "/FEATURES\\s+.*?/";
$p1 = preg_split($p, $gb_str);
if (isset($p1[1])) {
$p = "/ORIGIN\\s+.*?/";
$p2 = preg_split($p, $p1[1]);
$rm = $p2[0];
}
return $rm;
}
$str = file_get_contents("/home/jose/tmp/genbank/tmp.gb");
$x = extractVersion($str);
print_r($x);
//parseRecordFromString($str);
//print_r($gb_fields);