$numaff = 0;
$numnon = 0;
// Did we get any results back?
if ($this->citations) {
// Get a needed library
include_once PATH_CORE . DS . 'components' . DS . 'com_citations' . DS . 'helpers' . DS . 'format.php';
// Set some vars
$affiliated = '';
$nonaffiliated = '';
$formatter = new \Components\Citations\Helpers\Format();
$formatter->setTemplate($this->format);
// Loop through the citations and build the HTML
foreach ($this->citations as $cite) {
$showLinks = $cite->title && $cite->author && $cite->publisher ? true : false;
$item = "\t" . '<li>' . "\n";
$formatted = $cite->formatted ? $cite->formatted : \Components\Citations\Helpers\Format::formatReference($cite, '');
if ($cite->doi && $cite->url) {
$formatted = str_replace('doi:' . $cite->doi, '<a href="' . $cite->url . '" rel="external">' . 'doi:' . $cite->doi . '</a>', $formatted);
}
$item .= $formatted;
$item .= "\t\t" . '<p class="details">' . "\n";
if ($showLinks) {
$item .= "\t\t\t" . '<a href="' . Route::url('index.php?option=com_citations&task=download&id=' . $cite->id . '&format=bibtex&no_html=1') . '" title="' . Lang::txt('PLG_PUBLICATION_CITATIONS_DOWNLOAD_BIBTEX') . '">BibTex</a> <span>|</span> ' . "\n";
$item .= "\t\t\t" . '<a href="' . Route::url('index.php?option=com_citations&task=download&id=' . $cite->id . '&format=endnote&no_html=1') . '" title="' . Lang::txt('PLG_PUBLICATION_CITATIONS_DOWNLOAD_ENDNOTE') . '">EndNote</a>' . "\n";
}
if ($cite->eprint) {
if ($cite->eprint) {
$item .= "\t\t\t" . ' <span>|</span> <a href="' . stripslashes($cite->eprint) . '">' . Lang::txt('PLG_PUBLICATION_CITATIONS_ELECTRONIC_PAPER') . '</a>' . "\n";
}
}
$item .= "\t\t" . '</p>' . "\n";
<?php
if ($this->config->get('citation_show_badges', 'no') == 'yes') {
?>
<?php
echo \Components\Citations\Helpers\Format::citationBadges($cite, $this->database);
?>
<?php
}
?>
<?php
if ($this->config->get('citation_show_tags', 'no') == 'yes') {
?>
<?php
echo \Components\Citations\Helpers\Format::citationTags($cite, $this->database);
?>
<?php
}
?>
</div>
</td>
</tr>
<?php
$counter++;
?>
<?php
}
?>
</tbody>
</table>
/**
* Show a form for editing an entry
*
* @return void
*/
public function editTask()
{
// Check if they're logged in
if (User::isGuest()) {
$this->loginTask();
return;
}
// Check if admin
$isAdmin = false;
if (User::authorise('core.manage', $this->_option)) {
$isAdmin = true;
}
// are we allowing user to add citation
$allowImport = $this->config->get('citation_import', 1);
if ($allowImport == 0 || $allowImport == 2 && User::get('usertype') == 'Super Administrator') {
// Redirect
App::redirect(Route::url('index.php?option=' . $this->_option, false), Lang::txt('COM_CITATION_EDIT_NOTALLOWED'), 'warning');
return;
}
// get the citation types
$ct = new Type($this->database);
$types = $ct->getType();
$fields = array();
foreach ($types as $type) {
if (isset($type['fields'])) {
$f = $type['fields'];
if (strpos($f, ',') !== false) {
$f = str_replace(',', "\n", $f);
}
$f = array_map('trim', explode("\n", $f));
$f = array_values(array_filter($f));
$fields[strtolower(str_replace(' ', '', $type['type_title']))] = $f;
}
}
// add an empty value for the first type
array_unshift($types, array('type' => '', 'type_title' => ' - Select a Type —'));
// Incoming - expecting an array id[]=4232
$id = Request::getInt('id', 0);
// Pub author
$pubAuthor = false;
// Load the associations object
$assoc = new Association($this->database);
// Get associations
if ($id) {
$this->view->assocs = $assoc->getRecords(array('cid' => $id), $isAdmin);
$pubAuthor = $this->isPubAuthor($this->view->assocs);
}
// Is user authorized to edit citations?
if (!$isAdmin && !$pubAuthor) {
$id = 0;
}
// Load the object
$this->view->row = new Citation($this->database);
$this->view->row->load($id);
//make sure title isnt too long
$maxTitleLength = 30;
$shortenedTitle = strlen($this->view->row->title) > $maxTitleLength ? substr($this->view->row->title, 0, $maxTitleLength) . '…' : $this->view->row->title;
// Set the pathway
Pathway::append(Lang::txt(strtoupper($this->_option)), 'index.php?option=' . $this->_option);
if ($id && $id != 0) {
Pathway::append($shortenedTitle, 'index.php?option=' . $this->_option . '&task=view&id=' . $this->view->row->id);
}
Pathway::append(Lang::txt('COM_CITATIONS_EDIT'), 'index.php?option=' . $this->_option . '&task=edit&id=' . $this->view->row->id);
// Set the page title
Document::setTitle(Lang::txt('COM_CITATIONS_CITATION') . $shortenedTitle);
//push jquery to doc
Document::addScriptDeclaration('var fields = ' . json_encode($fields) . ';');
// Instantiate a new view
$this->view->title = Lang::txt(strtoupper($this->_option)) . ': ' . Lang::txt(strtoupper($this->_option) . '_' . strtoupper($this->_task));
$this->view->config = $this->config;
// No ID, so we're creating a new entry
// Set the ID of the creator
if (!$id) {
$this->view->row->uid = User::get('id');
// It's new - no associations to get
$this->view->assocs = array();
//tags & badges
$this->view->tags = array();
$this->view->badges = array();
} else {
//tags & badges
$this->view->tags = Format::citationTags($this->view->row, $this->database, false);
$this->view->badges = Format::citationBadges($this->view->row, $this->database, false);
}
//get the citation types
$ct = new Type($this->database);
$this->view->types = $ct->getType();
// Output HTML
foreach ($this->getErrors() as $error) {
$this->view->setError($error);
}
$this->view->setLayout('edit')->display();
}
$sitename = Config::get('sitename');
// Build our citation object
$citation = '';
if ($this->pub->doi) {
include_once PATH_CORE . DS . 'components' . DS . 'com_citations' . DS . 'helpers' . DS . 'format.php';
$cite = new stdClass();
$cite->title = $this->pub->get('title');
$date = $this->pub->published() ? $this->pub->published() : $this->pub->submitted();
$cite->year = Date::of($date)->format('Y');
$cite->location = '';
$cite->date = '';
$cite->url = $site . Route::url($this->pub->link('version'));
$cite->type = '';
$cite->author = $this->pub->getUnlinkedContributors();
$cite->doi = $this->pub->get('doi');
$citation = \Components\Citations\Helpers\Format::formatReference($cite);
}
// Embargo
$pubdate = Request::getVar('publish_date');
// Get configs
$termsUrl = $this->pub->config()->get('deposit_terms', '');
?>
<!-- Load content selection browser //-->
<div id="<?php
echo $elName;
?>
" class="draft-review <?php
echo $complete ? 'draft-complete' : 'draft-incomplete';
?>
<?php
" class="blockelement<?php
echo $required ? ' el-required' : ' el-optional';
echo $complete ? ' el-complete' : ' el-incomplete';
?>
freezeblock">
<?php
if (count($this->pub->_citations) > 0) {
$i = 1;
$formatter = new \Components\Citations\Helpers\Format();
$formatter->setTemplate($citationFormat);
?>
<div class="list-wrapper">
<ul class="itemlist" id="citations-list">
<?php
foreach ($this->pub->_citations as $cite) {
$citeText = $cite->formatted ? '<p>' . $cite->formatted . '</p>' : \Components\Citations\Helpers\Format::formatReference($cite, '');
?>
<li>
<span class="item-title citation-formatted"><?php
echo $citeText;
?>
</span>
</li>
<?php
$i++;
}
?>
</ul>
</div>
<?php
} else {
/**
* Edit a citation
*
* @return void
*/
public function editTask()
{
//stop menu from working?
Request::setVar('hidemainmenu', 1);
//get request vars - expecting an array id[]=4232
$id = Request::getVar('id', array());
if (is_array($id)) {
$id = !empty($id) ? $id[0] : 0;
}
//get all citations sponsors
$cs = new Sponsor($this->database);
$this->view->sponsors = $cs->getSponsor();
//get all citation types
$ct = new Type($this->database);
$this->view->types = $ct->getType();
//empty citation object
$this->view->row = new Citation($this->database);
//if we have an id load that citation data
if (isset($id) && $id != '' && $id != 0) {
// Load the citation object
$this->view->row->load($id);
// Get the associations
$assoc = new Association($this->database);
$this->view->assocs = $assoc->getRecords(array('cid' => $id));
//get sponsors for citation
$this->view->row_sponsors = $cs->getCitationSponsor($this->view->row->id);
//get the citations tags
$this->view->tags = Format::citationTags($this->view->row, \App::get('db'), false);
//get the badges
$this->view->badges = Format::citationBadges($this->view->row, \App::get('db'), false);
//parse citation params
$this->view->params = new Registry($this->view->row->params);
} else {
//set the creator
$this->view->row->uid = User::get('id');
// It's new - no associations to get
$this->view->assocs = array();
//array of sponsors - empty
$this->view->row_sponsors = array();
//empty tags and badges arrays
$this->view->tags = array();
$this->view->badges = array();
//empty params object
$this->view->params = new Registry('');
}
//are we padding back the citation data
if (isset($this->row)) {
$this->view->row = $this->row;
}
//are we passing back the tags from edit
if ($this->tags != '') {
$this->tags = explode(',', $this->tags);
foreach ($this->tags as $tag) {
$this->view->tags[]['raw_tag'] = $tag;
}
}
//are we passing back the tags from edit
if ($this->badges != '') {
$this->badges = explode(',', $this->badges);
foreach ($this->badges as $badge) {
$this->view->badges[]['raw_tag'] = $badge;
}
}
// Set any errors
if ($this->getError()) {
$this->view->setError($this->getError());
}
//set vars for view
$this->view->config = $this->config;
// Output the HTML
$this->view->setLayout('edit')->display();
}
<tr>
<th><?php
echo Lang::txt('COM_CITATIONS_LOCAL_LIBRARY');
?>
</th>
<td>
<?php
echo Lang::txt('COM_CITATIONS_LOCAL_LIBRARY_DESC');
?>
<ul class="secondary openurl">
<?php
if ($this->openUrl) {
?>
<li>
<?php
echo \Components\Citations\Helpers\Format::citationOpenUrl($this->openUrl, $citation);
?>
</li>
<?php
}
?>
</ul>
</td>
</tr>
<?php
}
?>
<tr>
<th><?php
echo Lang::txt('COM_CITATIONS_GOOGLE_SCHOLAR');
/**
* Process a single record
*
* @param integer $id
* @return object
*/
public function record($id)
{
if (strstr($id, ':')) {
list($id, $revision) = explode(':', $id);
}
$id = intval($id);
if (!isset($revision)) {
$revision = 0;
}
$this->database->setQuery("SELECT r.id, r.id AS identifier, r.title, r.introtext AS description, r.fulltxt, r.created, r.publish_up, r.alias, rt.alias AS type\n\t\t\tFROM `#__resources` AS r\n\t\t\tINNER JOIN `#__resource_types` AS rt ON r.type = rt.id\n\t\t\tWHERE r.id = " . $this->database->quote($id));
$record = $this->database->loadObject();
$record->base = $this->name();
$record->type = $record->base . ':' . $record->type;
if ($revision) {
$this->database->setQuery("SELECT *\n\t\t\t\tFROM `#__tool_version`\n\t\t\t\tWHERE toolname=" . $this->database->quote($record->alias) . " AND revision=" . $this->database->quote($revision) . "\n\t\t\t\tLIMIT 1");
$tool = $this->database->loadObject();
if ($tool->id) {
$record->title .= ' [version ' . $tool->version . ']';
$record->fulltxt = $tool->fulltxt;
$record->publish_up = $tool->released;
}
}
$record->date = $record->created;
if ($record->publish_up && $record->publish_up != $this->database->getNullDate()) {
$record->date = $record->publish_up;
}
if (!$record->description) {
$record->description = $record->fulltxt;
$record->description = preg_replace("#<nb:(.*?)>(.*?)</nb:(.*?)>#s", '', $record->description);
}
$record->description = strip_tags($record->description);
$record->description = trim($record->description);
unset($record->publish_up);
unset($record->created);
unset($record->fulltxt);
$isTool = 0;
if ($record->alias) {
$this->database->setQuery("SELECT id\n\t\t\t\tFROM `#__tool`\n\t\t\t\tWHERE toolname=" . $this->database->quote($record->alias) . "\n\t\t\t\tLIMIT 1");
$isTool = $this->database->loadResult();
}
if ($revision) {
/*"SELECT a.`doi`
FROM `#__doi_mapping` AS a
LEFT JOIN `#__tool_version` AS v ON v.id=a.versionid
WHERE a.rid=" . $this->database->quote($id) . " AND v.revision=" . $this->database->quote($revision) . "
LIMIT 1"*/
$this->database->setQuery("SELECT a.`doi`\n\t\t\t\tFROM `#__doi_mapping` AS a\n\t\t\t\tWHERE a.rid=" . $this->database->quote($id) . " AND a.local_revision=" . $this->database->quote($revision) . "\n\t\t\t\tLIMIT 1");
} else {
$this->database->setQuery("SELECT a.`doi`\n\t\t\t\tFROM `#__doi_mapping` AS a\n\t\t\t\tWHERE a.rid=" . $this->database->quote($id) . "\n\t\t\t\tORDER BY `versionid` DESC LIMIT 1");
}
$record->identifier = $this->identifier($id, $this->database->loadResult(), $revision);
$this->database->setQuery("SELECT DISTINCT t.raw_tag\n\t\t\tFROM `#__tags` t, `#__tags_object` tos\n\t\t\tWHERE t.id = tos.tagid AND tos.objectid=" . $this->database->quote($id) . " AND tos.tbl='resources' AND t.admin=0\n\t\t\tORDER BY t.raw_tag");
$record->subject = $this->database->loadColumn();
$record->relation = array();
$this->database->setQuery("SELECT r.id, r.title, r.type, r.logical_type AS logicaltype, r.created, r.created_by,\n\t\t\tr.published, r.publish_up, r.path, r.access, t.type AS logicaltitle, rt.type AS typetitle, r.standalone\n\t\t\tFROM `#__resources` AS r\n\t\t\tINNER JOIN `#__resource_types` AS rt ON r.type=rt.id\n\t\t\tINNER JOIN `#__resource_assoc` AS a ON r.id=a.child_id\n\t\t\tLEFT JOIN `#__resource_types` AS t ON r.logical_type=t.id\n\t\t\tWHERE r.published=1 AND a.parent_id=" . $this->database->quote($id) . "\n\t\t\tORDER BY a.ordering, a.grouping");
if ($children = $this->database->loadObjectList()) {
require_once PATH_CORE . DS . 'components' . DS . 'com_resources' . DS . 'helpers' . DS . 'html.php';
require_once PATH_CORE . DS . 'components' . DS . 'com_resources' . DS . 'tables' . DS . 'type.php';
foreach ($children as $child) {
$uri = \Components\Resources\Helpers\Html::processPath('com_resources', $child, $id, 3);
if (substr($uri, 0, 4) != 'http') {
$uri = self::$base . '/' . ltrim($uri, '/');
}
$record->relation[] = array('type' => 'hasPart', 'value' => $uri);
}
}
$this->database->setQuery("SELECT DISTINCT r.id\n\t\t\tFROM `#__resources` AS r\n\t\t\tINNER JOIN `#__resource_assoc` AS a ON r.id=a.parent_id\n\t\t\tWHERE r.published=1 AND a.child_id=" . $this->database->quote($id) . "\n\t\t\tORDER BY a.ordering, a.grouping");
if ($parents = $this->database->loadObjectList()) {
foreach ($parents as $parent) {
$record->relation[] = array('type' => 'isPartOf', 'value' => $this->identifier($parent->id, 0));
}
}
if ($isTool) {
if ($revision) {
$this->database->setQuery("SELECT n.uidNumber AS id,\n\t\t\t\t\t\tCASE WHEN t.name!='' AND t.name IS NOT NULL THEN t.name\n\t\t\t\t\t\tELSE n.name\n\t\t\t\t\t\tEND AS `name`\n\t\t\t\t\tFROM `#__tool_authors` AS t, `#__xprofiles` AS n, `#__tool_version` AS v\n\t\t\t\t\tWHERE n.uidNumber=t.uid AND t.toolname=" . $this->database->quote($record->alias) . " AND v.id=t.version_id and v.state<>3\n\t\t\t\t\tAND t.revision=" . $this->database->quote($revision) . "\n\t\t\t\t\tORDER BY t.ordering");
$record->creator = $this->database->loadColumn();
/*$record->relation[] = array(
'type' => 'isVersionOf',
'value' => $this->identifier($id, '', 0)
);*/
}
$this->database->setQuery("SELECT v.id, v.revision, d.*\n\t\t\t\tFROM `#__tool_version` as v\n\t\t\t\tLEFT JOIN `#__doi_mapping` as d\n\t\t\t\tON d.alias = v.toolname\n\t\t\t\tAND d.local_revision=v.revision\n\t\t\t\tWHERE v.toolname = " . $this->database->quote($record->alias) . "\n\t\t\t\tORDER BY v.state DESC, v.revision DESC");
$versions = $this->database->loadObjectList();
foreach ($versions as $i => $v) {
if (!$v->revision || $v->revision == $revision) {
continue;
}
$record->relation[] = array('type' => 'hasVersion', 'value' => $this->identifier($id, $v->doi, $v->revision));
}
}
if (!isset($record->creator)) {
$this->database->setQuery("SELECT \n\t\t\t\t\tCASE WHEN a.name!='' AND a.name IS NOT NULL THEN a.name\n\t\t\t\t\tELSE n.name\n\t\t\t\t\tEND AS `name`\n\t\t\t\tFROM `#__author_assoc` AS a\n\t\t\t\tLEFT JOIN `#__xprofiles` AS n ON n.uidNumber=a.authorid\n\t\t\t\tWHERE a.subtable='resources' AND a.subid=" . $this->database->quote($id) . " AND a.role!='submitter'\n\t\t\t\tORDER BY a.ordering, a.name");
$record->creator = $this->database->loadColumn();
}
$this->database->setQuery("SELECT *\n\t\t\tFROM `#__citations` AS a\n\t\t\tINNER JOIN `#__citations_assoc` AS n ON n.`cid`=a.`id`\n\t\t\tWHERE n.`tbl`='resource' AND n.`oid`=" . $this->database->quote($id) . " AND a.`published`=1\n\t\t\tORDER BY `year` DESC");
$references = $this->database->loadObjectList();
if (count($references) && file_exists(PATH_CORE . DS . 'components' . DS . 'com_citations' . DS . 'helpers' . DS . 'format.php')) {
include_once PATH_CORE . DS . 'components' . DS . 'com_citations' . DS . 'helpers' . DS . 'format.php';
$formatter = new \Components\Citations\Helpers\Format();
$formatter->setTemplate('apa');
foreach ($references as $reference) {
//<dcterms:isReferencedBy>uytruytry</dcterms:isReferencedBy>
//<dcterms:isVersionOf>jgkhfjf</dcterms:isVersionOf>
$cite = strip_tags(html_entity_decode($reference->formatted ? $reference->formatted : \Components\Citations\Helpers\Format::formatReference($reference, '')));
$cite = str_replace('"', '"', $cite);
$record->relation[] = array('type' => 'references', 'value' => trim($cite));
}
}
return $record;
}
/**
* Display the form allowing to edit a citation
*
* @return string HTML
*/
private function editAction($row = null)
{
// Check if they're logged in
if (User::isGuest()) {
return $this->loginAction();
}
if (!$this->params->get('access-manage')) {
throw new Exception(Lang::txt('PLG_MEMBERS_CITATIONS_NOT_AUTHORIZED'), 403);
}
// Create view object
$view = $this->view('edit');
$view->member = $this->member;
$view->option = $this->option;
$view->database = $this->database;
$view->allow_tags = $this->member->getParam('citation_allow_tags', 'yes');
$view->allow_badges = $this->member->getParam('citatoin_allow_badges', 'yes');
// Get the citation types
$citationsType = \Components\Citations\Models\Type::all();
$view->types = $citationsType->rows();
$fields = array();
foreach ($view->types as $type) {
if (isset($type->fields)) {
$f = $type->fields;
if (strpos($f, ',') !== false) {
$f = str_replace(',', "\n", $f);
}
$f = array_map('trim', explode("\n", $f));
$f = array_values(array_filter($f));
$fields[strtolower(str_replace(' ', '', $type->type_title))] = $f;
}
}
// Incoming
$id = Request::getInt('cid', 0);
// Load the object
if (is_object($row)) {
$view->row = $row;
} else {
$view->row = \Components\Citations\Models\Citation::oneOrNew($id);
// check to see if this member created this citation
if (!$view->row->isNew() && ($view->row->uid != User::get('id') || $view->row->scope != 'member')) {
// redirect
App::redirect(Route::url($this->member->getLink() . '&active=' . $this->_name), Lang::txt('PLG_MEMBERS_CITATIONS_OWNER_ONLY'), 'warning');
}
}
//make sure title isnt too long
$maxTitleLength = 30;
$shortenedTitle = strlen($view->row->title) > $maxTitleLength ? substr($view->row->title, 0, $maxTitleLength) . '…' : $view->row->title;
// Set the pathway
if ($id && $id != 0) {
Pathway::append($shortenedTitle, 'index.php?option=com_citations&task=view&id=' . $view->row->id);
Pathway::append(Lang::txt('PLG_MEMBERS_CITATIONS_EDIT'));
} else {
Pathway::append(Lang::txt('PLG_MEMBERS_CITATIONS_ADD'));
}
// Set the page title
Document::setTitle(Lang::txt('PLG_MEMBERS_CITATIONS_CITATION') . $shortenedTitle);
//push jquery to doc
Document::addScriptDeclaration('var fields = ' . json_encode($fields) . ';');
// Instantiate a new view
$view->title = Lang::txt('PLG_MEMBERS_CITATIONS') . ': ' . Lang::txt('PLG_MEMBERS_CITATIONS_' . strtoupper($this->action));
// No ID, so we're creating a new entry
// Set the ID of the creator
if (!$id) {
$view->row->uid = User::get('id');
//tags & badges
$view->tags = array();
$view->badges = array();
$view->row->id = -time();
} else {
if ($view->row->relatedAuthors->count()) {
$view->authors = $view->row->relatedAuthors;
} elseif ($view->row->relatedAuthors->count() == 0 && $view->row->author != '') {
// formats the author for the multi-author plugin
$authors = explode(';', $view->row->author);
$authorString = '';
$totalAuths = count($authors);
$x = 0;
foreach ($authors as &$author) {
/***
* Because the multi-select keys off of a comma,
* imported entries may display incorrectly (Wojkovich, Kevin) breaks the multi-select
* Convert this to Kevin Wojkovich and I'll @TODO add some logic in the formatter to
* format it properly within the bibilographic format ({LASTNAME},{FIRSTNAME})
***/
$authorEntry = explode(',', $author);
if (count($authorEntry == 2)) {
$author = $authorEntry[1] . ' ' . $authorEntry[0];
}
$authorString .= $author;
if ($totalAuths > 1 && $x < $totalAuths - 1) {
$authorString .= ',';
}
$x = $x + 1;
}
$view->authorString = $authorString;
}
//tags & badges
$view->tags = \Components\Citations\Helpers\Format::citationTags($view->row, $this->database, false);
$view->badges = \Components\Citations\Helpers\Format::citationBadges($view->row, $this->database, false);
}
// Output HTML
foreach ($this->getErrors() as $error) {
$view->setError($error);
}
return $view->loadTemplate();
}
defined('_HZEXEC_') or die;
$numaff = 0;
$numnon = 0;
// Did we get any results back?
if ($this->citations) {
// Get a needed library
include_once PATH_CORE . DS . 'components' . DS . 'com_citations' . DS . 'helpers' . DS . 'format.php';
// Set some vars
$affiliated = '';
$nonaffiliated = '';
$formatter = new \Components\Citations\Helpers\Format();
//$formatter->setFormat($this->format);
// Loop through the citations and build the HTML
foreach ($this->citations as $cite) {
$item = "\t" . '<li>' . "\n";
$item .= \Components\Citations\Helpers\Format::formatReference($cite, '');
$item .= "\t\t" . '<p class="details">' . "\n";
$item .= "\t\t\t" . '<a href="' . Route::url('index.php?option=com_citations&task=download&id=' . $cite->id . '&citationFormat=bibtex&no_html=1') . '" title="' . Lang::txt('PLG_RESOURCES_CITATIONS_DOWNLOAD_BIBTEX') . '">BibTex</a> <span>|</span> ' . "\n";
$item .= "\t\t\t" . '<a href="' . Route::url('index.php?option=com_citations&task=download&id=' . $cite->id . '&citationFormat=endnote&no_html=1') . '" title="' . Lang::txt('PLG_RESOURCES_CITATIONS_DOWNLOAD_ENDNOTE') . '">EndNote</a>' . "\n";
if ($cite->eprint) {
if ($cite->eprint) {
$item .= "\t\t\t" . ' <span>|</span> <a href="' . stripslashes($cite->eprint) . '">' . Lang::txt('PLG_RESOURCES_CITATIONS_ELECTRONIC_PAPER') . '</a>' . "\n";
}
}
$item .= "\t\t" . '</p>' . "\n";
$item .= "\t" . '</li>' . "\n";
// Decide which group to add it to
if ($cite->affiliated) {
$affiliated .= $item;
$numaff++;
} else {
/**
* Generate a citation for a resource
*
* @param string $option Component name
* @param object $cite Citation data
* @param string $id Resource ID
* @param string $citations Citations to prepend
* @param integer $type Resource type
* @param string $rev Tool revision
* @return string HTML
*/
public static function citation($option, $cite, $id, $citations, $type, $rev = '')
{
include_once PATH_CORE . DS . 'components' . DS . 'com_citations' . DS . 'helpers' . DS . 'format.php';
$html = '<p>' . Lang::txt('COM_RESOURCES_CITATION_INSTRUCTIONS') . '</p>' . "\n";
if (trim($citations)) {
$html .= '<ul class="citations results">' . "\n";
$html .= "\t" . '<li>' . "\n";
$html .= $citations;
$html .= "\t" . '</li>' . "\n";
$html .= '</ul>' . "\n";
}
if ($cite) {
$html .= '<ul class="citations results">' . "\n";
$html .= "\t" . '<li>' . "\n";
$html .= \Components\Citations\Helpers\Format::formatReference($cite);
if (is_numeric($rev) || is_string($rev) && $rev != 'dev') {
$html .= "\t\t" . '<p class="details">' . "\n";
$html .= "\t\t\t" . '<a href="index.php?option=' . $option . '&task=citation&id=' . $id . '&format=bibtex&no_html=1&rev=' . $rev . '" title="' . Lang::txt('COM_RESOURCES_DOWNLOAD_BIBTEX_FORMAT') . '">BibTex</a> <span>|</span> ' . "\n";
$html .= "\t\t\t" . '<a href="index.php?option=' . $option . '&task=citation&id=' . $id . '&format=endnote&no_html=1&rev=' . $rev . '" title="' . Lang::txt('COM_RESOURCES_DOWNLOAD_ENDNOTE_FORMAT') . '">EndNote</a>' . "\n";
$html .= "\t\t" . '</p>' . "\n";
}
$html .= "\t" . '</li>' . "\n";
$html .= '</ul>' . "\n";
}
/*if ($type == 7)
{
$html .= '<p>'.Lang::txt('In addition, we would appreciate it if you would add the following acknowledgment to your publication:').'</p>' . "\n";
$html .= '<ul class="citations results">' . "\n";
$html .= "\t".'<li>' . "\n";
$html .= "\t\t".'<p>'.Lang::txt('Simulation services for results presented here were provided by the Network for Computational Nanotechnology (NCN) at nanoHUB.org').'</p>' . "\n";
$html .= "\t".'</li>' . "\n";
$html .= '</ul>' . "\n";
}*/
return $html;
}
/**
* Display the form allowing to edit a citation
*
* @return string HTML
*/
private function _edit()
{
// create view object
$view = $this->view('default', 'edit');
// Check if they're logged in
if (User::isGuest()) {
$this->_loginTask();
}
// push objects to view
$view->group = $this->group;
$view->isManager = $this->authorized == 'manager' ? true : false;
$view->config = new \Hubzero\Config\Registry($this->group->get('params'));
if ($view->isManager == false) {
App::redirect(Route::url('index.php?option=com_groups&cn=' . $this->group->cn . '&active=citations'), Lang::txt('PLG_GROUPS_CITATIONS_GROUP_MANAGER_ONLY'), 'warning');
}
// get the citation types
$citationsType = \Components\Citations\Models\Type::all();
$view->types = $citationsType->rows()->toObject();
$fields = array();
foreach ($view->types as $type) {
if (isset($type->fields)) {
$f = $type->fields;
if (strpos($f, ',') !== false) {
$f = str_replace(',', "\n", $f);
}
$f = array_map('trim', explode("\n", $f));
$f = array_values(array_filter($f));
$fields[strtolower(str_replace(' ', '', $type->type_title))] = $f;
}
}
// Incoming - expecting an array id[]=4232
$id = Request::getInt('id', 0);
// Pub author
$pubAuthor = false;
// Is user authorized to edit citations?
if (!$view->isManager && !$pubAuthor) {
$id = 0;
}
// Load the object
$view->row = \Components\Citations\Models\Citation::oneorNew($id);
// make sure title isnt too long
$maxTitleLength = 30;
$shortenedTitle = strlen($view->row->title) > $maxTitleLength ? substr($view->row->title, 0, $maxTitleLength) . '…' : $view->row->title;
// Set the pathway
if ($id && $id != 0) {
Pathway::append($shortenedTitle, 'index.php?option=com_citations&task=view&id=' . $view->row->id);
Pathway::append(Lang::txt('PLG_GROUPS_CITATIONS_EDIT'));
} else {
Pathway::append(Lang::txt('PLG_GROUPS_CITATIONS_ADD'));
}
// non-owner redirect
if (!$view->row->isNew() && $view->row->scope != 'group') {
App::redirect(Route::url('index.php?option=com_groups&cn=' . $this->group->cn . '&active=citations'), Lang::txt('PLG_GROUPS_CITATIONS_PERMISSION_DENIED'), 'warning');
}
// Set the page title
Document::setTitle(Lang::txt('PLG_GROUPS_CITATIONS_CITATION') . $shortenedTitle);
// push jquery to doc
Document::addScriptDeclaration('var fields = ' . json_encode($fields) . ';');
// Instantiate a new view
$view->title = Lang::txt(strtoupper($this->_name)) . ': ' . Lang::txt(strtoupper($this->_name) . '_' . strtoupper($this->action));
// No ID, so we're creating a new entry
// Set the ID of the creator
if (!$id) {
$view->row->uid = User::get('id');
// tags & badges
$view->tags = array();
$view->badges = array();
$view->row->id = -time();
} else {
if ($view->row->relatedAuthors->count()) {
$view->authors = $view->row->relatedAuthors;
} elseif ($view->row->relatedAuthors->count() == 0 && $view->row->author != '') {
// formats the author for the multi-author plugin
$authors = explode(';', $view->row->author);
$authorString = '';
$totalAuths = count($authors);
$x = 0;
foreach ($authors as &$author) {
/***
* Because the multi-select keys off of a comma,
* imported entries may display incorrectly (Wojkovich, Kevin) breaks the multi-select
* Convert this to Kevin Wojkovich and I'll @TODO add some logic in the formatter to
* format it properly within the bibilographic format ({LASTNAME},{FIRSTNAME})
***/
$authorEntry = explode(',', $author);
if (count($authorEntry) == 2) {
$author = $authorEntry[1] . ' ' . $authorEntry[0];
}
$authorString .= $author;
if ($totalAuths > 1 && $x < $totalAuths - 1) {
$authorString .= ',';
}
$x = $x + 1;
}
$view->authorString = $authorString;
}
// tags & badges
$view->tags = \Components\Citations\Helpers\Format::citationTags($view->row, $this->database, false);
$view->badges = \Components\Citations\Helpers\Format::citationBadges($view->row, $this->database, false);
}
// Output HTML
foreach ($this->getErrors() as $error) {
$view->setError($error);
}
return $view->loadTemplate();
}
/**
* Process a single record
*
* @param integer $id
* @return object
*/
public function record($id)
{
if (strstr($id, ':')) {
list($id, $revision) = explode(':', $id);
}
$id = intval($id);
if (!isset($revision)) {
$revision = 0;
}
$this->database->setQuery("SELECT pv.*, pv.doi AS identifier, rt.alias AS type\n\t\t\tFROM `#__publication_versions` AS pv\n\t\t\tINNER JOIN `#__publications` AS p ON p.id = pv.publication_id\n\t\t\tINNER JOIN `#__publication_categories` AS rt ON rt.id = p.category\n\t\t\tWHERE p.id = " . $this->database->quote($id) . ($revision ? " AND pv.version_number=" . $this->database->quote($revision) : ""));
$record = $this->database->loadObject();
$record->version_id = $record->id;
$record->id = $id;
$record->base = $this->name();
$record->type = $record->base . ':' . $record->type;
$record->title .= ' [version ' . $record->version_label . ']';
$record->description = strip_tags($record->description);
$record->description = trim($record->description);
$record->identifier = $this->identifier($id, $record->identifier, $revision);
$this->database->setQuery("SELECT pv.created, pv.submitted, pv.published_up, pv.accepted\n\t\t\tFROM `#__publication_versions` AS pv\n\t\t\tWHERE pv.id = " . $this->database->quote($record->version_id) . "\n\t\t\tORDER BY pv.submitted DESC LIMIT 1");
$dates = $this->database->loadObject();
$record->date = $dates->created;
if ($dates->submitted && $dates->submitted != '0000-00-00 00:00:00') {
$record->date = $dates->submitted;
}
if ($dates->accepted && $dates->accepted != '0000-00-00 00:00:00') {
$record->date = $dates->accepted;
}
if ($dates->published_up && $dates->published_up != '0000-00-00 00:00:00' && $dates->published_up > $record->date) {
$record->date = $dates->published_up;
}
$this->database->setQuery("SELECT pa.name\n\t\t\tFROM `#__publication_authors` AS pa\n\t\t\tWHERE pa.role != 'submitter' AND pa.publication_version_id=" . $this->database->quote($record->version_id) . "\n\t\t\tORDER BY pa.name");
$record->creator = $this->database->loadColumn();
$this->database->setQuery("SELECT DISTINCT t.raw_tag\n\t\t\tFROM `#__tags` t, `#__tags_object` tos\n\t\t\tWHERE t.id = tos.tagid AND tos.objectid=" . $this->database->quote($id) . " AND tos.tbl='publications' AND t.admin=0\n\t\t\tORDER BY t.raw_tag");
$record->subject = $this->database->loadColumn();
// Relations
$record->relation = array();
$this->database->setQuery("SELECT v.id, v.publication_id, v.version_number, v.doi\n\t\t\tFROM `#__publication_versions` as v\n\t\t\tWHERE v.state=1 AND v.publication_id = " . $this->database->quote($record->id) . "\n\t\t\tORDER BY v.version_number DESC");
$versions = $this->database->loadObjectList();
foreach ($versions as $i => $v) {
if (!$v->version_number || $v->version_number == $revision) {
continue;
}
$record->relation[] = array('type' => 'hasVersion', 'value' => $this->identifier($id, $v->doi, $v->version_number));
}
$this->database->setQuery("SELECT *\n\t\t\tFROM `#__citations` AS a\n\t\t\tLEFT JOIN `#__citations_assoc` AS n ON n.`cid`=a.`id`\n\t\t\tWHERE n.`tbl`='publication' AND n.`oid`=" . $this->database->quote($id) . " AND n.`type`='owner' AND a.`published`=1\n\t\t\tORDER BY `year` DESC");
$references = $this->database->loadObjectList();
if (count($references) && file_exists(PATH_CORE . DS . 'components' . DS . 'com_citations' . DS . 'helpers' . DS . 'format.php')) {
include_once PATH_CORE . DS . 'components' . DS . 'com_citations' . DS . 'helpers' . DS . 'format.php';
$formatter = new \Components\Citations\Helpers\Format();
$formatter->setTemplate('apa');
foreach ($references as $reference) {
$cite = strip_tags(html_entity_decode($reference->formatted ? $reference->formatted : \Components\Citations\Helpers\Format::formatReference($reference, '')));
$cite = str_replace('"', '"', $cite);
$record->relation[] = array('type' => 'isReferencedBy', 'value' => trim($cite));
}
}
$this->database->setQuery("SELECT *\n\t\t\tFROM `#__citations` AS a\n\t\t\tLEFT JOIN `#__citations_assoc` AS n ON n.`cid`=a.`id`\n\t\t\tWHERE n.`tbl`='publication' AND n.`oid`=" . $this->database->quote($id) . " AND n.`type`!='owner' AND a.`published`=1\n\t\t\tORDER BY `year` DESC");
$references = $this->database->loadObjectList();
if (count($references) && file_exists(PATH_CORE . DS . 'components' . DS . 'com_citations' . DS . 'helpers' . DS . 'format.php')) {
include_once PATH_CORE . DS . 'components' . DS . 'com_citations' . DS . 'helpers' . DS . 'format.php';
$formatter = new \Components\Citations\Helpers\Format();
$formatter->setTemplate('apa');
foreach ($references as $reference) {
$cite = strip_tags(html_entity_decode($reference->formatted ? $reference->formatted : \Components\Citations\Helpers\Format::formatReference($reference, '')));
$cite = str_replace('"', '"', $cite);
$record->relation[] = array('type' => 'references', 'value' => trim($cite));
}
}
return $record;
}
/**
* Process a single record
*
* @param integer $id
* @return object
*/
public function record($id)
{
if (strstr($id, ':')) {
list($id, $revision) = explode(':', $id);
}
$id = intval($id);
if (!isset($revision)) {
$revision = 0;
}
$this->database->setQuery("SELECT pv.*, pv.doi AS identifier, rt.alias AS type, pv.publication_id\n\t\t\tFROM `#__publication_versions` AS pv\n\t\t\tINNER JOIN `#__publications` AS p ON p.id = pv.publication_id\n\t\t\tINNER JOIN `#__publication_categories` AS rt ON rt.id = p.category\n\t\t\tWHERE pv.id = " . $this->database->quote($id));
$record = $this->database->loadObject();
$record->version_id = $record->id;
$id = $record->publication_id;
$record->id = $id;
if (!$record->identifier) {
$record->identifier = self::$base . '/' . ltrim(\Route::url('index.php?option=com_publications&id=' . $id . ($record->version_id ? '&v=' . $record->version_id : '')), '/');
}
$record->base = $this->name();
$record->type = $record->base . ':' . $record->type;
$record->description = strip_tags($record->description);
$record->description = trim($record->description);
$this->database->setQuery("SELECT pv.submitted\n\t\t\tFROM `#__publication_versions` pv, `#__publications` p\n\t\t\tWHERE p.id = pv.publication_id AND p.id = " . $this->database->quote($id) . "\n\t\t\tORDER BY pv.submitted DESC LIMIT 1");
$record->date = $this->database->loadResult();
$this->database->setQuery("SELECT pa.name\n\t\t\tFROM `#__publication_authors` pa, `#__publication_versions` pv, `#__publications` p\n\t\t\tWHERE pa.publication_version_id = pv.id AND pa.role != 'submitter' AND pv.publication_id = p.id AND p.id=" . $this->database->quote($id) . "\n\t\t\tORDER BY pa.name");
$record->creator = $this->database->loadColumn();
$this->database->setQuery("SELECT DISTINCT t.raw_tag\n\t\t\tFROM `#__tags` t, `#__tags_object` tos\n\t\t\tWHERE t.id = tos.tagid AND tos.objectid=" . $this->database->quote($id) . " AND tos.tbl='publications' AND t.admin=0\n\t\t\tORDER BY t.raw_tag");
$record->subject = $this->database->loadColumn();
// Relations
$record->relation = array();
$this->database->setQuery("SELECT *\n\t\t\tFROM `#__citations` AS a\n\t\t\tLEFT JOIN `#__citations_assoc` AS n ON n.`cid`=a.`id`\n\t\t\tWHERE n.`tbl`='publication' AND n.`oid`=" . $this->database->quote($id) . " AND n.`type`='owner' AND a.`published`=1\n\t\t\tORDER BY `year` DESC");
$references = $this->database->loadObjectList();
if (count($references) && file_exists(PATH_CORE . DS . 'components' . DS . 'com_citations' . DS . 'helpers' . DS . 'format.php')) {
include_once PATH_CORE . DS . 'components' . DS . 'com_citations' . DS . 'helpers' . DS . 'format.php';
$formatter = new \Components\Citations\Helpers\Format();
$formatter->setTemplate('apa');
foreach ($references as $reference) {
$cite = strip_tags(html_entity_decode($reference->formatted ? $reference->formatted : \Components\Citations\Helpers\Format::formatReference($reference, '')));
$cite = str_replace('"', '"', $cite);
$record->relation[] = array('type' => 'isReferencedBy', 'value' => trim($cite));
}
}
$this->database->setQuery("SELECT *\n\t\t\tFROM `#__citations` AS a\n\t\t\tLEFT JOIN `#__citations_assoc` AS n ON n.`cid`=a.`id`\n\t\t\tWHERE n.`tbl`='publication' AND n.`oid`=" . $this->database->quote($id) . " AND n.`type`!='owner' AND a.`published`=1\n\t\t\tORDER BY `year` DESC");
$references = $this->database->loadObjectList();
if (count($references) && file_exists(PATH_CORE . DS . 'components' . DS . 'com_citations' . DS . 'helpers' . DS . 'format.php')) {
include_once PATH_CORE . DS . 'components' . DS . 'com_citations' . DS . 'helpers' . DS . 'format.php';
$formatter = new \Components\Citations\Helpers\Format();
$formatter->setTemplate('apa');
foreach ($references as $reference) {
$cite = strip_tags(html_entity_decode($reference->formatted ? $reference->formatted : \Components\Citations\Helpers\Format::formatReference($reference, '')));
$cite = str_replace('"', '"', $cite);
$record->relation[] = array('type' => 'references', 'value' => trim($cite));
}
}
return $record;
}
