/**
* @see SampleSecurityInterface::is_access()
* @param integer $intention 1 = Read, 2 = Write
* @param bool $ignore_admin_status
* @return bool
*/
public function is_access($intention, $ignore_admin_status = false)
{
global $user;
if ($this->sample_id) {
if ($user->is_admin() and $ignore_admin_status == false) {
return true;
} else {
$sample = new Sample($this->sample_id);
$sample_folder_id = SampleFolder::get_folder_by_sample_id($this->sample_id);
$sample_folder_data_entity = new DataEntity(Folder::get_data_entity_id_by_folder_id($sample_folder_id));
if ($sample->get_owner_id() == $user->get_user_id()) {
return true;
} else {
$pk = SampleHasUser_Access::get_entry_by_sample_id_and_user_id($this->sample_id, $user->get_user_id());
$sample_has_user = new SampleHasUser_Access($pk);
if ($intention == 1) {
if ($sample_has_user->get_read() == true) {
return true;
} else {
$organisation_unit_array = OrganisationUnit::list_entries_by_user_id($user->get_user_id());
if (is_array($organisation_unit_array) and count($organisation_unit_array) >= 1) {
foreach ($organisation_unit_array as $key => $value) {
$pk = SampleHasOrganisationUnit_Access::get_entry_by_sample_id_and_organisation_unit_id($this->sample_id, $value);
if (is_numeric($pk)) {
return true;
}
}
}
/*
$parent_virtual_folder_array = $sample_folder_data_entity->get_parent_virtual_folder_ids();
if (is_array($parent_virtual_folder_array) and count($parent_virtual_folder_array) >= 1)
{
foreach($parent_virtual_folder_array as $key => $value)
{
$virtual_folder = new VirtualFolder($value);
$parent_folder_id = $virtual_folder->get_parent_folder_id();
$folder = Folder::get_instance($parent_folder_id);
if ($folder->is_read_access() == true)
{
return true;
}
}
} */
return false;
}
} else {
if ($sample_has_user->get_write() == true) {
return true;
} else {
return false;
}
}
}
}
} else {
return null;
}
}
/**
* Creates a new Sample Folder including Folder
* @param integer $sample_id
* @return integer
*/
public function create($sample_id)
{
if (is_numeric($sample_id)) {
$sample = new Sample($sample_id);
// Folder
$sample_folder_id = constant("SAMPLE_FOLDER_ID");
$folder = new Folder($sample_folder_id);
$path = new Path($folder->get_path());
$path->add_element($sample_id);
$name = $sample->get_name() . " (" . $sample->get_formatted_id() . ")";
if (($folder_id = parent::create($name, $sample_folder_id, $path->get_path_string(), $sample->get_owner_id(), null)) != null) {
$sample_has_folder_access = new SampleHasFolder_Access(null);
if ($sample_has_folder_access->create($sample_id, $folder_id) == null) {
return null;
}
// Virtual Folders (Event)
$sample_folder_create_event = new SampleFolderCreateEvent($folder_id);
$event_handler = new EventHandler($sample_folder_create_event);
if ($event_handler->get_success() == false) {
$this->delete();
return false;
} else {
return $folder_id;
}
} else {
return null;
}
} else {
return null;
}
}
/**
* @param string $json_column_array
* @param string $json_argument_array
* @param string $get_array
* @param string $css_page_id
* @param string $css_row_sort_id
* @param string $entries_per_page
* @param string $page
* @param string $sortvalue
* @param string $sortmethod
* @return string
* @throws SampleIDMissingException
* @throws SampleSecurityAccessDeniedException
*/
public static function list_organisation_unit_permissions($json_column_array, $json_argument_array, $get_array, $css_page_id, $css_row_sort_id, $entries_per_page, $page, $sortvalue, $sortmethod)
{
global $user;
if ($get_array) {
$_GET = unserialize($get_array);
}
$argument_array = json_decode($json_argument_array);
$sample_id = $argument_array[1];
if (is_numeric($sample_id)) {
$sample = new Sample($sample_id);
if ($sample->get_owner_id() == $user->get_user_id() or $user->is_admin() == true) {
$list_request = new ListRequest_IO();
$list_request->set_column_array($json_column_array);
if (!is_numeric($entries_per_page) or $entries_per_page < 1) {
$entries_per_page = 20;
}
$list_array = Sample_Wrapper::list_sample_organisation_units($sample_id, $sortvalue, $sortmethod, $page * $entries_per_page - $entries_per_page, $page * $entries_per_page);
if (is_array($list_array) and count($list_array) >= 1) {
foreach ($list_array as $key => $value) {
$list_array[$key]['symbol'] = "<img src='images/icons/organisation_unit.png' alt='' style='border:0;' />";
if ($list_array[$key]['organisation_unit_id']) {
$organisation_unit = new OrganisationUnit($list_array[$key]['organisation_unit_id']);
} else {
$organisation_unit = new OrganisationUnit(1);
}
$list_array[$key]['name'] = $organisation_unit->get_name();
$delete_paramquery = $_GET;
$delete_paramquery['run'] = "admin_permission_ou_delete";
$delete_paramquery['id'] = $list_array[$key]['organisation_unit_id'];
unset($delete_paramquery['sure']);
$delete_params = http_build_query($delete_paramquery, '', '&');
$list_array[$key]['delete']['link'] = $delete_params;
$list_array[$key]['delete']['content'] = "delete";
}
} else {
$list_request->empty_message("<span class='italic'>No results found!</span>");
}
$list_request->set_array($list_array);
return $list_request->get_page($page);
} else {
throw new SampleSecurityAccessDeniedException();
}
} else {
throw new SampleIDMissingException();
}
}
/**
* @param string $get_array
* @throws SampleIDMissingException
*/
public static function get_sample_information($get_array)
{
global $user;
if ($get_array) {
$_GET = unserialize($get_array);
}
if ($_GET['sample_id']) {
$sample_security = new SampleSecurity($_GET['sample_id']);
if ($sample_security->is_access(1, false)) {
$sample = new Sample($_GET['sample_id']);
$owner = new User($sample->get_owner_id());
$template = new HTMLTemplate("sample/ajax/detail_information.html");
$template->set_var("id", $sample->get_formatted_id());
$template->set_var("name", $sample->get_name());
$template->set_var("owner", $owner->get_full_name(false));
$template->set_var("template", $sample->get_template_name());
$template->set_var("permissions", $sample_security->get_access_string());
$datetime = new DatetimeHandler($sample->get_datetime());
$template->set_var("datetime", $datetime->get_datetime());
if ($sample->get_date_of_expiry()) {
$date_of_expiry = new DatetimeHandler($sample->get_date_of_expiry());
$template->set_var("date_of_expiry", $date_of_expiry->get_date());
} else {
$template->set_var("date_of_expiry", false);
}
if ($sample->get_current_location_name()) {
$template->set_var("location", $sample->get_current_location_name());
} else {
$template->set_var("location", false);
}
if ($sample->get_manufacturer_id()) {
$manufacturer = new Manufacturer($sample->get_manufacturer_id());
$template->set_var("manufacturer", $manufacturer->get_name());
} else {
$template->set_var("manufacturer", false);
}
if ($sample->get_availability() == true) {
$template->set_var("status", "available");
} else {
$template->set_var("status", "not available");
}
if ($sample->get_owner_id() == $user->get_user_id() or $user->is_admin() == true) {
$template->set_var("is_owner", true);
} else {
$template->set_var("is_owner", false);
}
if ($user->is_admin() == true) {
$template->set_var("is_admin", true);
} else {
$template->set_var("is_admin", false);
}
$owner_paramquery = array();
$owner_paramquery['username'] = $_GET['username'];
$owner_paramquery['session_id'] = $_GET['session_id'];
$owner_paramquery['nav'] = "sample";
$owner_paramquery['run'] = "common_dialog";
$owner_paramquery['dialog'] = "user_detail";
$owner_paramquery['id'] = $sample->get_owner_id();
$owner_params = http_build_query($owner_paramquery, '', '&');
$template->set_var("owner_params", $owner_params);
$location_history_paramquery = $_GET;
$location_history_paramquery['run'] = "location_history";
$location_history_params = http_build_query($location_history_paramquery, '', '&');
$template->set_var("location_history_params", $location_history_params);
$template->output();
}
} else {
throw new SampleIDMissingException();
}
}
/**
* @throws SampleIDMissingException
* @throws SampleSecurityAccessDeniedException
* @throws SamplePermissionOrganisationUnitIDMissingException
*/
public static function ou_permission_delete()
{
global $user;
if ($_GET['sample_id']) {
if ($_GET['id']) {
$sample_id = $_GET['sample_id'];
$sample = new Sample($sample_id);
$sample_security = new SampleSecurity($sample_id);
if ($sample->get_owner_id() == $user->get_user_id() or $user->is_admin() == true) {
if ($_GET['sure'] != "true") {
$template = new HTMLTemplate("sample/int_admin/ou_permission_delete.html");
$paramquery = $_GET;
$paramquery['sure'] = "true";
$params = http_build_query($paramquery);
$template->set_var("yes_params", $params);
$paramquery = $_GET;
unset($paramquery['nextpage']);
unset($paramquery['sure']);
$paramquery['nav'] = "sample";
$paramquery['run'] = "admin_permission_ou";
$params = http_build_query($paramquery);
$template->set_var("no_params", $params);
$template->output();
} else {
$paramquery = $_GET;
unset($paramquery['nextpage']);
unset($paramquery['sure']);
$paramquery['nav'] = "sample";
$paramquery['run'] = "admin_permission_ou";
$params = http_build_query($paramquery);
$entry_id = $sample_security->get_entry_by_organisation_unit_id($_GET['id']);
if ($sample_security->delete_organisation_unit($entry_id)) {
Common_IO::step_proceed($params, "Delete Sample", "Operation Successful", null);
} else {
Common_IO::step_proceed($params, "Delete Sample", "Operation Failed", null);
}
}
} else {
throw new SampleSecurityAccessDeniedException();
}
} else {
throw new SamplePermissionOrganisationUnitIDMissingException();
}
} else {
throw new SampleIDMissingException();
}
}
/**
* @return object
* @throws SampleIDMissingException
* @throws BaseReportTCPDFClassMissingException
*/
public static function get_full_report()
{
if (class_exists("TCPDF")) {
if ($_GET['sample_id']) {
$sample_id = $_GET['sample_id'];
$sample = new Sample($sample_id);
$owner = new User($sample->get_owner_id());
$owner_name = str_replace(" ", " ", $owner->get_full_name(false));
$paper_size_info_array = PaperSize::get_standard_size();
$format = array($paper_size_info_array['width'], $paper_size_info_array['height']);
if ($paper_size_info_array['width'] >= $paper_size_info_array['height']) {
$orientation = "L";
} else {
$orientation = "P";
}
$pdf = new SamplePDF($sample_id, $sample->get_name(), $orientation, "mm", $format, true, 'UTF-8', false);
$pdf->SetCreator(PDF_CREATOR);
$pdf->SetAuthor('Open-LIMS');
$pdf->SetTitle('Sample Report');
$pdf->SetHeaderData(PDF_HEADER_LOGO, PDF_HEADER_LOGO_WIDTH, PDF_HEADER_TITLE, PDF_HEADER_STRING);
$pdf->setHeaderFont(array(PDF_FONT_NAME_MAIN, '', PDF_FONT_SIZE_MAIN));
$pdf->setFooterFont(array(PDF_FONT_NAME_DATA, '', PDF_FONT_SIZE_DATA));
$pdf->SetDefaultMonospacedFont(PDF_FONT_MONOSPACED);
$pdf->SetMargins($paper_size_info_array['margin_left'], $paper_size_info_array['margin_top'] * 3, $paper_size_info_array['margin_right']);
$pdf->SetHeaderMargin(PDF_MARGIN_HEADER);
$pdf->SetFooterMargin(PDF_MARGIN_FOOTER);
$pdf->SetAutoPageBreak(TRUE, $paper_size_info_array['margin_bottom']);
$pdf->setImageScale(PDF_IMAGE_SCALE_RATIO);
$pdf->setLanguageArray($l);
$pdf->setFontSubsetting(true);
$pdf->SetFont('dejavusans', '', 14, '', true);
$pdf->AddPage();
$print_sample_id = "S" . str_pad($sample_id, 8, '0', STR_PAD_LEFT);
$pdf->Write(0, '', '', 0, 'L', true, 0, false, false, 0);
$pdf->SetFillColor(255, 255, 255);
$pdf->SetTextColor(0, 0, 0);
$pdf->MultiCell(90, 0, "ID", 1, 'L', 1, 0, '', '', true, 0, false, true, 0);
$pdf->MultiCell(100, 0, $print_sample_id, 1, '', 1, 1, '', '', true, 0, false, true, 0);
$pdf->MultiCell(90, 0, "Name", 1, 'L', 1, 0, '', '', true, 0, false, true, 0);
$pdf->MultiCell(100, 0, $sample->get_name(), 1, '', 1, 1, '', '', true, 0, false, true, 0);
$pdf->MultiCell(90, 0, "Type/Template", 1, 'L', 1, 0, '', '', true, 0, false, true, 0);
$pdf->MultiCell(100, 0, $sample->get_template_name(), 1, '', 1, 1, '', '', true, 0, false, true, 0);
$pdf->MultiCell(90, 0, "Owner", 1, 'L', 1, 0, '', '', true, 0, false, true, 0);
$pdf->MultiCell(100, 0, $owner_name, 1, '', 1, 1, '', '', true, 0, false, true, 0);
$pdf->MultiCell(90, 0, "Status", 1, 'L', 1, 0, '', '', true, 0, false, true, 0);
if ($sample->get_availability() == true) {
$pdf->MultiCell(100, 0, "available", 1, '', 1, 1, '', '', true, 0, false, true, 0);
} else {
$pdf->MultiCell(100, 0, "not available", 1, '', 1, 1, '', '', true, 0, false, true, 0);
}
$pdf->MultiCell(90, 0, "Date/Time", 1, 'L', 1, 0, '', '', true, 0, false, true, 0);
$datetime = new DatetimeHandler($sample->get_datetime());
$pdf->MultiCell(100, 0, $datetime->get_datetime(false), 1, '', 1, 1, '', '', true, 0, false, true, 0);
if ($sample->get_manufacturer_id()) {
$manufacturer = new Manufacturer($sample->get_manufacturer_id());
$pdf->MultiCell(90, 0, "Manufacturer", 1, 'L', 1, 0, '', '', true, 0, false, true, 0);
$pdf->MultiCell(100, 0, $manufacturer->get_name(), 1, '', 1, 1, '', '', true, 0, false, true, 0);
}
if ($sample->get_date_of_expiry()) {
$pdf->MultiCell(90, 0, "Date of Expiry", 1, 'L', 1, 0, '', '', true, 0, false, true, 0);
$date_of_expiry = new DatetimeHandler($sample->get_date_of_expiry());
$pdf->MultiCell(100, 0, $date_of_expiry->get_date(), 1, '', 1, 1, '', '', true, 0, false, true, 0);
}
$module_dialog_array = ModuleDialog::list_dialogs_by_type("item_report");
if (is_array($module_dialog_array) and count($module_dialog_array) >= 1) {
foreach ($module_dialog_array as $key => $value) {
if (file_exists($value['class_path'])) {
require_once $value['class_path'];
if (class_exists($value['class'])) {
if (method_exists($value['class'], $value['method'])) {
$sql = " SELECT item_id FROM " . constant("SAMPLE_HAS_ITEM_TABLE") . " WHERE sample_id = " . $_GET['sample_id'] . "";
$pdf = $value['class']::$value['method']($sql, $sample->get_item_id(), $pdf);
}
}
}
}
}
return $pdf;
} else {
throw new SampleIDMissingException();
}
} else {
throw new BaseReportTCPDFClassMissingException();
}
}
