Exemplo n.º 1
0
 public function setLabTestAction()
 {
     $params = $this->_getParam('labTest');
     $labTest = new LabTest();
     if (isset($params['labTestId'])) {
         $labTest->labTestId = (int) $params['labTestId'];
         $labTest->populate();
     }
     $labTest->populateWithArray($params);
     $labTest->persist();
     $data = __('Lab test successfully set.');
     $json = Zend_Controller_Action_HelperBroker::getStaticHelper('json');
     $json->suppressExit = true;
     $json->direct($data);
 }
 public function loadTestLabsAction()
 {
     $f = fopen('/tmp/labdata.csv', "r");
     $counter = 0;
     $labOrderId = 0;
     $labTestId = 0;
     while (($line = fgetcsv($f)) && $counter < 100) {
         $date = date('Y-m-d H:i:s', mt_rand(strtotime('2000-01-01'), strtotime('today')));
         if ($counter == 0 || $counter % 20 == 0) {
             $lo = new LabOrder();
             $lo->patientId = 65650;
             $lo->status = "F";
             $lo->persist();
             $labOrderId = $lo->labOrderId;
             $lt = new LabTest();
             $lt->labOrderId = $labOrderId;
             $lt->observationTime = $date;
             $lt->status = "F";
             $lt->persist();
             $labTestId = $lt->labTestId;
         }
         $lr = new LabResult();
         $lr->value = $line[2];
         $lr->description = $line[0];
         $lr->labTestId = $labTestId;
         //echo $lr->toString();
         $lr->persist();
         $counter++;
     }
     exit;
 }
Exemplo n.º 3
0
 public static function hl7Lab($hl7msg, $personId)
 {
     $hl7msg = preg_replace("/\r/", "\n", $hl7msg);
     $db = Zend_Registry::get('dbAdapter');
     $xml = new HL7XML($hl7msg);
     $xml->parse();
     file_put_contents('/tmp/xml', print_r($xml, true));
     $orders = $xml->xml->xpath("//MSH");
     $ordersCtr = count($orders);
     for ($o = 0; $o < $ordersCtr; $o++) {
         $orderXml = simplexml_load_string($orders[$o]->asXml());
         $pid = 0;
         if (strlen((string) current($orderXml->xpath("//PID.3"))) > 0 && isset($mrn2pid[(string) current($orderXml->xpath("//PID.3"))])) {
             $pid = $mrn2pid[(string) current($orderXml->xpath("//PID.3"))];
         } else {
             $sqlSelect = $db->select()->from("patient")->join("person", "person.person_id = patient.person_id")->where("patient.record_number = ?", (string) current($orderXml->xpath("//PID.3")));
             $patients = $db->query($sqlSelect)->fetchAll();
             if (!count($patients) > 0) {
                 continue;
             }
             $pid = $patients[0]['person_id'];
             $mrn2pid[(string) current($orderXml->xpath("//PID.3"))] = $pid;
             if (!$pid > 0) {
                 continue;
             }
             // last name, first name and DOB
         }
         $order = new LabOrder();
         $order->_shouldAudit = false;
         $order->_cascadePersist = false;
         $order->patientId = $pid;
         //$order->type = '';
         $order->status = 'F';
         //$order->manualOrderDate = date('Y-m-d',strtotime((string)current($orderXml->xpath("//ORC/ORC.9"))));
         $orderingProvider = current($orderXml->xpath("//ORC.12.3"));
         $orderingProvider .= " " . current($orderXml->xpath("//ORC.12.2"));
         $orderingProvider .= " " . current($orderXml->xpath("//ORC.12.1"));
         $orderingProvider .= " (" . current($orderXml->xpath("//ORC.12.0")) . ")";
         $order->ordering_provider = $orderingProvider;
         $order->persist();
         $testsGroup = $orderXml->xpath("//ORC");
         //var_dump($testsGroup);continue;
         $tgCtr = count($testsGroup);
         for ($x = 0; $x < $tgCtr; $x++) {
             //echo "test\n";
             $test = simplexml_load_string($testsGroup[$x]->asXml());
             //var_dump($test);
             $t = new LabTest();
             $t->_shouldAudit = false;
             $t->_cascadePersist = false;
             $t->labOrderId = $order->labOrderId;
             $t->orderNum = (string) current($test->xpath("//OBR.2.0"));
             $t->filer_order_num = (string) current($test->xpath("//OBR.3.0"));
             $observation_time = preg_replace('/([0-9][0-9][0-9][0-9][0-9][0-9][0-9][0-9][0-9][0-9][0-9][0-9]).*/', '${1}', current($test->xpath("//OBR.22")));
             $t->observation_time = date('Y-m-d H:i:s', strtotime($observation_time));
             $manual_order_date = preg_replace('/([0-9][0-9][0-9][0-9][0-9][0-9][0-9][0-9][0-9][0-9][0-9][0-9]).*/', '${1}', current($test->xpath("//OBR.7")));
             $order->manual_order_date = date('Y-m-d H:i:s', strtotime($manual_order_date));
             $order->persist();
             $specimen_received_time = preg_replace('/([0-9][0-9][0-9][0-9][0-9][0-9][0-9][0-9][0-9][0-9][0-9][0-9]).*/', '${1}', current($test->xpath("//OBR.14")));
             $t->specimen_received_time = date('Y-m-d H:i:s', strtotime($observation_time));
             $report_time = preg_replace('/([0-9][0-9][0-9][0-9][0-9][0-9][0-9][0-9][0-9][0-9][0-9][0-9]).*/', '${1}', current($test->xpath("//OBR.22")));
             $t->report_time = date('Y-m-d H:i:s', strtotime($report_time));
             //$t->ordering_provider = ;
             $t->service = (string) current($test->xpath("//OBR.4.1")) . " " . current($test->xpath("//OBR.4.2"));
             $t->component_code = (string) current($test->xpath("//OBR.3.0"));
             $t->status = (string) current($test->xpath("//OBR.25"));
             $t->clia_disclosure = (string) current($test->xpath("//OBR.21.0")) . " " . (string) current($test->xpath("//OBR.21.1")) . " " . (string) current($test->xpath("//OBR.21.2")) . " " . (string) current($test->xpath("//OBR.21.3")) . " " . (string) current($test->xpath("//OBR.21.4")) . " " . (string) current($test->xpath("//OBR.21.4")) . " " . (string) current($test->xpath("//OBR.21.5")) . " " . (string) current($test->xpath("//OBR.21.6"));
             $t->persist();
             //echo $t->toString();
             $resultsGroup = $test->xpath("//OBR/OBX");
             //var_dump($t->toString()); continue;
             $rgCtr = count($resultsGroup);
             for ($i = 0; $i < $rgCtr; $i++) {
                 $result = simplexml_load_string($resultsGroup[$i]->asXml());
                 //var_dump($result->asXml());
                 $lr = null;
                 $lr = new LabResult();
                 $lr->_shouldAudit = false;
                 $lr->_cascadePersist = false;
                 $lr->labTestId = $t->labTestId;
                 $lr->description = (string) current($result->xpath("//OBX.3.1")) . " " . (string) current($result->xpath("//OBX.3.2")) . "(" . (string) current($result->xpath("//OBX.3.0")) . ")";
                 //$lr->extra = ',$row['Group']);
                 $lr->identifier = (string) current($result->xpath("//OBX.3"));
                 $lr->reference_range = (string) current($result->xpath("//OBX.7"));
                 $lr->abnormal_flag = (string) current($result->xpath("//OBX.8"));
                 $lrobservation_time = preg_replace('/([0-9][0-9][0-9][0-9][0-9][0-9][0-9][0-9][0-9][0-9][0-9][0-9]).*/', '${1}', current($test->xpath("//OBR.22")));
                 $lr->observation_time = date('Y-m-d H:i:s', strtotime($lrobservation_time));
                 $lr->units = (string) current($result->xpath("//OBX.6"));
                 $lr->value = (string) current($result->xpath("//OBX.5"));
                 $lr->result_status = (string) current($result->xpath("//OBX.11"));
                 //echo $lr->toString() . "\n\n";
                 $lr->persist();
                 if (count($result->xpath("//NTE")) > 0) {
                     $note = "";
                     foreach ($result->xpath("//NTE") as $noteLine) {
                         $note .= trim($noteLine->{'NTE.3'}) . "\n";
                     }
                     $labNote = new LabNote();
                     $labNote->_shouldAudit = false;
                     $labNote->_cascadePersist = false;
                     $labNote->labTestId = $t->labTestId;
                     $labNote->labResultId = $lr->labResultId;
                     $labNote->note = $note;
                     $labNote->persist();
                 }
             }
         }
     }
 }