/**
* Edit clinical notes template, this must be called using AJAX
*/
public function editTemplateAction()
{
$clinicalNoteTemplateId = (int) $this->_getParam('clinicalNoteTemplateId');
$cnTemplate = new ClinicalNoteTemplate();
if ($clinicalNoteTemplateId > 0) {
$cnTemplate->clinicalNoteTemplateId = $clinicalNoteTemplateId;
$cnTemplate->populate();
$definitions = array();
$cndIterator = new ClinicalNoteDefinitionIterator();
$filters = array();
$filters['clinicalNoteTemplateId'] = $clinicalNoteTemplateId;
$cndIterator->setFilters($filters);
$this->view->definitions = $cndIterator;
}
$objForm = new WebVista_Form(array('name' => 'cnTemplate'));
$objForm->setAction(Zend_Registry::get('baseUrl') . "clinical-notes-manager.raw/process-edit-template");
$objForm->loadORM($cnTemplate, "cnTemplate");
$objForm->setWindow('windowEditTemplate');
$this->view->form = $objForm;
$this->render();
}
public function indexAction()
{
$personId = (int) $this->_getParam('personId');
$clinicalNoteId = (int) $this->_getParam('clinicalNoteId');
trigger_error('ttpid: ' . $personId, E_USER_NOTICE);
$cn = new ClinicalNote();
$cn->clinicalNoteId = (int) $clinicalNoteId;
$cn->populate();
$templateId = $cn->clinicalNoteTemplateId;
$cnTemplate = new ClinicalNoteTemplate();
$cnTemplate->clinicalNoteTemplateId = (int) $templateId;
$cnTemplate->populate();
$xml = simplexml_load_string($cnTemplate->template);
$objective = '';
foreach ($xml as $question) {
foreach ($question as $key => $item) {
if ($key != "dataPoint") {
continue;
}
$namespace = (string) $item->attributes()->template;
// extract the nsdr: format
preg_match('/{nsdr:(.*)}/', $namespace, $matches);
if (isset($matches[1])) {
$namespace = str_replace('[selectedPatientId]', $personId, $matches[1]);
$result = NSDR::populate($namespace);
$objective .= $result[$namespace];
}
}
}
$this->view->objective = $objective;
$filter = array('personId' => $personId);
$pl = new ProblemList();
$pli = $pl->getIterator();
$pli->setFilters($filter);
$this->view->problemListIterator = $pli;
}
public static function upgradeClinicalNote()
{
/* NOTE: take output file and
# cat upnote.sql | sort -n | uniq > upnote2.sql
For it to run quickly all the fields used in the join need to be indexed, otherwise 5 seconds per row give or take */
set_time_limit(0);
$db = Zend_Registry::get('dbAdapter');
$genericData = new self();
$sql = "\n\t\tSELECT genericData.name, clinicalNoteDefinitions.clinicalNoteTemplateId\n\t\t\tFROM `genericData`\n\t\t\tINNER JOIN clinicalNotes ON clinicalNotes.clinicalNoteId = genericData.objectId\n\t\t\tINNER JOIN clinicalNoteDefinitions on clinicalNoteDefinitions.clinicalNoteDefinitionId = clinicalNotes.clinicalNoteDefinitionId\n\t\t\tGROUP BY genericData.name, clinicalNoteDefinitions.clinicalNoteTemplateId";
$res = $db->query($sql);
while (($row = $res->fetch()) !== false) {
$cn = new ClinicalNoteTemplate();
$cn->clinicalNoteTemplateId = (int) $row['clinicalNoteTemplateId'];
if (!$cn->populate()) {
$error = 'Error populating clinical note ' . $cn->clinicalNoteId;
trigger_error($error);
continue;
}
try {
$xml = new SimpleXMLElement($cn->template);
foreach ($xml as $question) {
foreach ($question as $key => $item) {
if ($key != 'dataPoint') {
continue;
}
$namespace = (string) $item->attributes()->namespace;
$html = preg_replace('/[-\\.]/', '_', $namespace);
$output = 'UPDATE ' . $genericData->_table . ' INNER JOIN clinicalNotes ON clinicalNotes.clinicalNoteId = genericData.objectId INNER JOIN clinicalNoteDefinitions on clinicalNoteDefinitions.clinicalNoteDefinitionId = clinicalNotes.clinicalNoteDefinitionId SET `name`=' . $db->quote($namespace) . ' WHERE `name`=' . $db->quote($html) . ' AND objectClass=\'ClinicalNote\' AND clinicalNoteDefinitions.clinicalNoteTemplateId=' . $cn->clinicalNoteTemplateId . ";\n";
file_put_contents('/tmp/upnote.sql', $output, FILE_APPEND);
echo ".";
}
}
} catch (Exception $e) {
$error = 'Error parsing template for clinical note ' . $cn->clinicalNoteId . ' template ' . $templateId;
trigger_error($error);
continue;
}
}
}
