function get_images_list($specimen_pid, $nothing, $workflow_id)
{
global $user;
if (Workflow_Users::doesWorkflowHaveUserName($workflow_id, $user->name) && Workflow_Permission::doesWorkflowHavePermission($workflow_id, "canAnalyzeSpecimen")) {
$image_pids = AP_Specimen::getImageListForSpecimen($specimen_pid);
echo json_encode($image_pids);
}
}
function ingest_specimen_image()
{
$specimen_image_successfully_ingested = "false";
$rft_id = $_POST['rft_id'];
$original_url = $_POST['original_url'];
$jp2_url = $_POST['jp2_url'];
$institution = $_POST['institution'];
$collector = $_POST['collector'];
$collection_number = $_POST['collection_number'];
$collection_date = $_POST['collection_date'];
$scientific_name = $_POST['scientific_name'];
if (isset($_POST['rft_id'])) {
include_once drupal_get_path('module', 'apiary_project') . '/adore-djatoka/functions_djatoka.php';
module_load_include('php', 'Apiary_Project', 'fedora_commons/class.AP_Specimen');
$new_specimen = new AP_Specimen();
$specimen_label = '';
if ($new_specimen->createSpecimenObject($collector, $collection_number, $collection_date, $scientific_name, $specimen_label)) {
$specimen_image_successfully_ingested = "true";
module_load_include('php', 'Apiary_Project', 'fedora_commons/class.AP_Image');
$new_image = new AP_Image();
list($width, $height) = getimagesize($jp2_url);
$image_label = '';
$jpeg_datastream_url = getDjatokaURL($rft_id, 'getRegion', '4', '0', '0', $height, $width, '', '');
if ($new_image->createImageObject($new_specimen->pid, $jp2_url, $rft_id, $original_url, $width, $height, $jpeg_datastream_url, $image_label)) {
$msg = 'Specimen ' . $new_specimen->pid . ' and image ' . $new_image->pid . ' successfully created.<br>';
} else {
$msg = 'Unable to create a new image. Specimen ' . $new_specimen->pid . ' successfully created.<br>';
}
} else {
$msg = 'Unable to create a new specimen or image object.<br>';
}
}
$returnJSON['specimen_image_successfully_ingested'] = $specimen_image_successfully_ingested;
$returnJSON['msg'] = $msg;
echo json_encode($returnJSON);
}
function addROIsForImage($image_pid)
{
$image_rois = AP_Specimen::getImageListForSpecimen($specimen_pid);
$rois = array();
for ($i; $i < sizeOf($image_rois); $i++) {
$roi_pid = $image_rois[$i];
if (array_search($roi_pid, $this->permission_list) > -1) {
//don't add anything, it's already there!
} else {
//array_push((array) $this->roi_pids, $roi_pid);
$roi['pid'] = $roi_pid;
$roiMetadata = AP_ROI::getROIMetadata_record($roi_pid);
$roi['roiMetadata'] = $roiMetadata;
array_push($rois, $roi);
}
}
return $rois;
}
}
else {
$max = 1000000;
}
if($max > 0) {
include_once(drupal_get_path('module', 'apiary_project') . '/adore-djatoka/functions_djatoka.php');
$i = 0;
if($file = @fopen($source_file, 'r')) {
while(!feof($file) && $i < $max) {
$jp2_file = trim(fgets($file));
$jp2URL = $jp2URL_base.$jp2_file;
$sourceURL = $sourceURL_base.substr($jp2_file, 0, -4).'.tif';
$jp2_rft_id = $rft_id . substr($jp2_file, 0, -4);
if($handle = @fopen($jp2URL, 'r')) {
module_load_include('php', 'Apiary_Project', 'fedora_commons/class.AP_Specimen');
$new_specimen = new AP_Specimen();
$specimen_label = '';
if($new_specimen->createSpecimenObject('', '', '', '', $specimen_label)) {
module_load_include('php', 'Apiary_Project', 'fedora_commons/class.AP_Image');
$new_image = new AP_Image();
//Ultimately this will have a djatoka plugin check the resolver db and add records as needed
list($width, $height) = getimagesize($jp2URL);
$image_label = '';
$jpeg_datastream_url = getDjatokaURL($jp2_rft_id, 'getRegion', '4', '0', '0', $height, $width, '', '');
if($new_image->createImageObject($new_specimen->pid, $jp2URL, $jp2_rft_id, $sourceURL, $width, $height, $jpeg_datastream_url, $image_label)) {
echo 'Specimen '.$new_specimen->pid.' and image '.$new_image->pid.' successfully created.<br>';
}
else {
echo 'Unable to create a new image. Specimen '.$new_specimen->pid.' successfully created.<br>';;
}
}
