function create_roi($image_pid, $options, $workflow_id)
{
global $user;
if (Workflow_Users::doesWorkflowHaveUserName($workflow_id, $user->name) && Workflow_Permission::doesWorkflowHavePermission($workflow_id, "canAnalyzeSpecimen")) {
global $base_url;
list($true_y1, $true_x1, $true_height, $true_width, $roi_type) = explode(":", $options);
if ($roi_type == "Annotation") {
$roi_type = "Annotation/Other";
}
$roiMetadata_base_url = $base_url;
$imageMetadata_record = AP_Image::getimageMetadata_record($image_pid);
$parent_image_height = $imageMetadata_record["h"];
//To Be Removed
$parent_image_width = $imageMetadata_record["w"];
//To Be Removed
$sourceURL = $imageMetadata_record['URL'];
//To Be Removed//The ROI sourceURL is the ap-image URL
$parent_image_display_width = 650;
//To Be Removed
$parent_image_display_height = $parent_image_height * $parent_image_display_width / $parent_image_width;
//To Be Removed
$rft_id = $imageMetadata_record['rft_id'];
$roiURL = getDjatokaURL($rft_id, 'getRegion', '100', $true_y1, $true_x1, $true_height, $true_width, '', '');
$new_roi = new AP_ROI();
$new_roi->roiMetadata_base_url = $roiMetadata_base_url;
$status = $new_roi->createROIObject($image_pid, $sourceURL, $roiURL, $roi_type, $true_x1, $true_y1, $true_width, $true_height, $parent_image_width, $parent_image_height, $parent_image_display_width, $parent_image_display_height, "");
$roi_pid = $new_roi->pid;
$roiMetadata_record = AP_ROI::getroiMetadata_record($roi_pid);
$changedHeight = thumbHeightReset($roiMetadata_record['h'], $roiMetadata_record['w']);
if (!$changedHeight) {
$roi_thumb_url = getDjatokaURL($roiMetadata_record['sourceURL'], 'getRegion', '100', $roiMetadata_record['y'], $roiMetadata_record['x'], $roiMetadata_record['h'], $roiMetadata_record['w'], '78', '0');
} else {
$roi_thumb_url = getDjatokaURL($roiMetadata_record['sourceURL'], 'getRegion', '100', $roiMetadata_record['y'], $roiMetadata_record['x'], $changedHeight, $roiMetadata_record['w'], '78', '0');
}
$status_dom = AP_ROI::getROIStatusDom($roi_pid);
$transcribed_status = $status_dom->getElementsByTagName("transcribedStatus")->item(0)->nodeValue;
$parsed_status = $status_dom->getElementsByTagName("parsedL1Status")->item(0)->nodeValue;
if ($transcribed_status == "") {
$transcribed_status = "Undefined";
}
if ($parsed_status == "") {
$parsed_status = "Undefined";
}
$html = generate_roi_html($roi_pid, $roi_thumb_url, $roiMetadata_record, $transcribed_status, $parsed_status, $workflow_id);
$returnHTML['html'] = $html;
$returnHTML['pid'] = $roi_pid;
$returnHTML['roi_queue_html'] = add_roi_to_queue($image_pid, $roi_pid, $workflow_id);
if ($status == true) {
//Echo JQuery function to add HTML for new ROI
}
} else {
header('HTTP/1.1 401 Unauthorized');
$returnHTML .= "Sorry! You do not have permission for this operation";
}
echo json_encode($returnHTML);
}
function get_transcribe_content($roi_pid, $size, $workflow_id)
{
global $user;
list($height, $width) = explode(":", $size);
$returnJSON = "";
if (Workflow_Users::doesWorkflowHaveUserName($workflow_id, $user->name) && Workflow_Permission::doesWorkflowHavePermission($workflow_id, "canTranscribe")) {
$roiMetadata_record = AP_ROI::getroiMetadata_record($roi_pid);
$roiURL = $roiMetadata_record['roiURL'];
if ($height > $roiMetadata_record['h'] / $roiMetadata_record['w'] * $width) {
$roi_image_url = scaleDjatokaURL($roiURL, $width, '0');
//$roi_image_url = getDjatokaURL($roiMetadata_record['sourceURL'], 'getRegion', '100', $roiMetadata_record['y'], $roiMetadata_record['x'], $roiMetadata_record['h'], $roiMetadata_record['w'], $width, '0');
$returnJSON['image_html'] = "<img class='transcribe_roi_image' src='{$roi_image_url}' />";
} else {
$roi_image_url = scaleDjatokaURL($roiURL, '0', $height);
//$roi_image_url = getDjatokaURL($roiMetadata_record['sourceURL'], 'getRegion', '100', $roiMetadata_record['y'], $roiMetadata_record['x'], $roiMetadata_record['h'], $roiMetadata_record['w'], '0', $height);
$returnJSON['image_html'] = "<img class='transcribe_roi_image' src='{$roi_image_url}' />";
}
$roi_obj = new roiHandler($roi_pid);
$returnJSON['gocr'] = "";
$returnJSON['ocrad'] = "";
$returnJSON['ocropus'] = "";
$returnJSON['text'] = "";
if ($roi_obj->ifExist("GOCR")) {
$returnJSON['gocr'] = $roi_obj->getDatastream("GOCR");
}
if ($roi_obj->ifExist("ocrad")) {
$returnJSON['ocrad'] = $roi_obj->getDatastream("ocrad");
}
if ($roi_obj->ifExist("OCRopus")) {
$returnJSON['ocropus'] = $roi_obj->getDatastream("OCRopus");
}
if ($roi_obj->ifExist("Text")) {
$returnJSON['text'] = $roi_obj->getDatastream("Text");
}
} else {
echo "Sorry! You do not have permission for this operation";
}
echo json_encode($returnJSON);
}
function specimenMetadata_details_content($roi_pid = null)
{
global $base_url;
$fedora_base_url = variable_get("fedora_base_url", "http://localhost:8080/fedora");
$html = '';
$html .= '<div id="specimenMetadata_details_content">' . "\n";
if ($roi_pid != null && $roi_pid != "0") {
$roi = new AP_ROI();
$image_pid = $roi->get_image_pid($roi_pid);
$sp_pid = AP_Image::get_specimen_pid($image_pid);
$roiMetadata_record = $roi->getroiMetadata_record($roi_pid);
$roiURL = $roiMetadata_record['roiURL'];
$djatoka_url = scaleDjatokaURL($roiURL, '300', '0');
$html .= "<h3>Details: {$roi_pid}</h3>";
$html .= "<table><tr><td valign='top' width='300'>";
$html .= "<img src='{$djatoka_url}'/></td>";
$html .= "<td>Specimen: {$sp_pid}<br/>Image: {$image_pid}<br/>ROI: {$roi_pid}<br/>Datastream: specimenMetadata<br/><br/>";
$text = shell_exec("curl -H - XGET {$fedora_base_url}/get/{$roi_pid}/specimenMetadata");
$check = strpos($text, "404 Not Found");
if ($check === FALSE) {
$specimenMetadata_xml_url = $server_base . '/drupal/modules/apiary_project/workflow/include/specimenMetadata_xml.php?pid=' . $roi_pid;
$html .= '<textarea style="width:500px; height:200px">' . $text . '</textarea></td>';
$html .= "</tr></table>";
} else {
$html .= "No specimenMetadata found";
}
} else {
}
$html .= '</div><!-- specimenMetadata_details_content -->' . "\n";
echo $html;
}
function get_parsing_content($roi_pid, $size, $parse_level, $workflow_id)
{
global $user;
list($height, $width) = explode(":", $size);
if (Workflow_Users::doesWorkflowHaveUserName($workflow_id, $user->name) && Workflow_Permission::doesWorkflowHavePermission($workflow_id, $parse_level)) {
$roiMetadata_record = AP_ROI::getroiMetadata_record($roi_pid);
$roiURL = $roiMetadata_record['roiURL'];
if ($height > $roiMetadata_record['h'] / $roiMetadata_record['w'] * $width) {
$roi_image_url = scaleDjatokaURL($roiURL, $width, '0');
$image_html = "<img class='transcribe_roi_image' src='{$roi_image_url}' />";
} else {
$roi_image_url = scaleDjatokaURL($roiURL, '0', $height);
$image_html = "<img class='transcribe_roi_image' src='{$roi_image_url}' />";
}
$roi_obj = new roiHandler($roi_pid);
$returnJSON['text'] = "";
if ($roi_obj->ifExist("Text")) {
$text = nl2br($roi_obj->getDatastream("Text"));
}
} else {
return false;
}
return array($image_html, $text);
}
function get_right_click_list($pid)
{
$ap_roi = new AP_ROI();
$roiMetadata_record = $ap_roi->getroiMetadata_record($pid);
$roi_type_temp = $roiMetadata_record['roiType'];
$roi_list = getROItypeList();
$roi_type = '';
switch ($roi_type_temp) {
case $roi_list[0]:
$roi_type = "primary";
break;
case $roi_list[1]:
$roi_type = "determination";
break;
case $roi_list[2]:
$roi_type = "barcode";
break;
case $roi_list[3]:
$roi_type = "type";
break;
case $roi_list[4]:
$roi_type = "annotation";
break;
}
//Context Menu List
print '<ul id="apiary_context_menu" class="jeegoocontext cm_blue">';
//Who & When
print '<li>Who & When<ul>';
$whoObj = db_query("select * from {apiary_project} where parse_level=1 AND (ui_categories='who' OR ui_categories='when')");
while ($res = db_fetch_object($whoObj)) {
if (stristr($res->roi_association, $roi_type) !== false) {
print '<li><a id="menu_' . $res->term . '" href=javascript:getSelText("' . $res->term . '")>' . $res->display_label . '</a>';
}
}
print "</ul></li>";
//What
print '<li>What<ul>';
$whatObj = db_query("select * from {apiary_project} where parse_level=1 AND ui_categories='what'");
while ($res = db_fetch_object($whatObj)) {
if (stristr($res->roi_association, $roi_type) !== false) {
print '<li><a id="menu_' . $res->term . '" href=javascript:getSelText("' . $res->term . '")>' . $res->display_label . '</a>';
}
}
print "</ul></li>";
//Where
print '<li>Where</a><ul>';
$whereObj = db_query("select * from {apiary_project} where parse_level=1 AND ui_categories='where'");
while ($res = db_fetch_object($whereObj)) {
if (stristr($res->roi_association, $roi_type) !== false) {
print '<li><a id="menu_' . $res->term . '" href=javascript:getSelText("' . $res->term . '")>' . $res->display_label . '</a>';
}
}
print "</ul></li>";
print '</ul>';
}