<?php require "../include/clusterizator.php"; require "include/menu.php"; require "include/explore-work.php"; requirejs("include/explore-analize.js"); requirecss("include/explore.css"); clus_head(); show_menu(); get_explore_info(); ?> Click on the data set that you want to analyze<br /><br /> <div id="analizecontent"> </div>
<?php require "../include/clusterizator.php"; require "include/menu.php"; require "include/database.php"; require "include/info.php"; require "include/list-work.php"; requirejs("include/slider.js"); requirecss("include/slider.css"); requirejs("include/sliding-window.js"); requirecss("include/sliding-window.css"); clus_head(); show_menu(); get_info_or_ask(); ?> <span class="get-list-on"> Please select a list: </span> <select id="get-list-tendina" class="intersel"></select><select class="colorchooser"></select> <span id="multiple-selection"> </span> <span class="get-list-off"> <h1>Multiple sliding window histogram <sup><a href="../help/index.php#x1-80002.3" >?</a></sup> </h1> <span id="allright"> <label for="bins">Change number of bins</label> <input type="text" name="bins" size="3" id="bins" value=64>
<?php require "../include/clusterizator.php"; require "include/menu.php"; require "include/explore-work.php"; requirejs("include/explore-add.js"); requirecss("include/explore.css"); requirecss("include/sliding-iframe.css"); requirejs("include/sliding-iframe.js"); clus_head(); show_menu(); get_explore_info(); ?> Select an option:<br /> <a href="javascript:show_sliding_window('file-pers-slid');" > Load a data set of genes from file</a> <br /> <iframe src="add-file.php?username=@@prnt_exploreuser@@&iframe=true" id="file-pers-slid" class="sliding-hidden template-href"> </iframe> <a href="javascript:show_sliding_window('inter-pers-slid');" > Create a data set from the intersection of multiple data sets</a> <br /> <iframe src="add-hyper.php?username=@@prnt_exploreuser@@&iframe=true" id="inter-pers-slid" class="sliding-hidden template-href"> </iframe> <a href="javascript:show_sliding_window('merge-pers-slid');" > Create a data set from the merge of multiple data sets</a>
<?php require "../include/clusterizator.php"; require "include/menu.php"; require "include/explore-work.php"; requirejs("include/explore-add-hyper.js"); requirecss("include/explore.css"); requirecss("include/sliding.css"); requirejs("include/sliding.js"); requirejs("include/explore-subroutine.js"); requirecss("include/explore-subroutine.css"); clus_head(); show_menu(); get_explore_info(); ?> <div id="box-inter-pers-slid" class="sliding-box"> This tool will create a new data set with the following information: <form id="form-box-inter-pers-slid" action="../analizzatore/hyper.php" method="post" enctype="multipart/form-data" target="upload-pers-target" onsubmit="set_add_output('form-box-inter-pers-slid')"> <input id="action-form-box-inter-pers-slid" type="hidden" name="action" value="create" /> <input id="user-form-box-inter-pers-slid" type="hidden" name="user" /> <input id="user1-form-box-inter-pers-slid" type="hidden" name="user1" /> <input id="list1-form-box-inter-pers-slid" type="hidden" name="list1" /> <input id="user2-form-box-inter-pers-slid"
<?php require "../include/clusterizator.php"; require "include/menu.php"; require "include/explore-work.php"; requirejs("include/explore-add-file.js"); requirecss("include/explore.css"); requirecss("include/sliding-iframe.css"); requirejs("include/synonim.js"); requirecss("include/synonim.css"); clus_head(); show_menu(); get_explore_info(); ?> <div id="box-file-pers-slid" class="sliding-box"> Upload a single-column text file to create a new gene data set: <form id="form-box-file-pers-slid" action="../analizzatore/add_list.php" method="post" enctype="multipart/form-data" target="upload-pers-target" onsubmit="set_add_output('form-box-file-pers-slid')"> <input id="user-form-box-file-pers-slid" type="hidden" name="user" /> <label for="list">Gene data set:</label> <input type="file" name="list" /><br /> <label for="title">Name of the data set (max 128 char):</label> <input type="text" size=40 maxlength=128 name="title" value="No title"/> <h4>
<?php require "../include/clusterizator.php"; require "include/menu.php"; require "include/database.php"; require "include/info.php"; require "include/list-work.php"; requirejs("include/list-edit.js"); if (isset($_GET["id"])) { $info = list_load_info($_GET["id"]); } else { if (isset($_GET["code"]) && isset($_GET["user"])) { $info = list_load_info_code($_GET["code"], $_GET['user']); } else { exit(0); } } clus_head(); export_list_info_js($info); show_menu(); ?> <span class="list-owner"> <h1> Update information for the data set </h1> Data set with code: <span class="prnt_lcode"></span><br /> <form class="template-href" action="../admin/list-queries.php?action=update&code=@@prnt_lcode@@&user=@@prnt_luser@@" method="post" enctype="multipart/form-data"> <input id="titolo" type="text" size=40 maxlength=128 name="title" /> <input type="submit" value="Update name (max 128 char)"> </form>
<?php requirejs("include/explore-work.js"); requirejs("include/evaluate_end_set_prnt.js"); requirejs("include/evaluate_end_set_prnt.css"); requirecss("include/explore-work.css"); function export_exploreuser($expuser) { echo "\n"; echo "<span id=\"exploreuser\" class=\"hidden\">{$expuser}</span>"; } function get_explore_info() { if (isset($_GET["username"])) { $exploreuser = $_GET["username"]; } else { $exploreuser = "******"; } export_exploreuser($exploreuser); }
<?php require "include/clusterizator.php"; require "include/menu.php"; requirecss("include/sliding.css"); requirejs("include/sliding.js"); requirejs("include/evaluate_end_set_prnt.js"); requirejs("include/evaluate_end_set_prnt.css"); requirejs("include/tools.js"); clus_head(); show_menu(); ?> <h1>Tools</h1> <h2>Linear aggregation analysis</h2> This tool performs the linear aggregation analysis from Scolari et al. Molecular BioSystems 7, 878-888 2011. <br /><br /> <a href="analizzatore/cluster.php">Perform the linear aggregation cluster analysis</a> <span class='hidden'> <h2>Multifun ontology enrichment test</h2> (To be written)<br /><br /> <a>Perform the functional classification enrichment test</a> </span> <h2>Multiple sliding window histogram</h2>
<?php require "../include/clusterizator.php"; require "include/menu.php"; require "include/database.php"; require "include/info.php"; require "include/list-work.php"; requirejs("include/synonim.js"); requirecss("include/synonim.css"); requirejs("include/list.js"); requirecss("include/list.css"); clus_head(); show_menu(); get_info_or_ask(); ?> <span class="get-list-on"> Please select a data set to show information: </span> <select id="get-list-tendina" class="intersel" > </select> <span class="get-list-off"> <h1> Information </h1> <span class="list-guest"> <span class="infotitle">Code:</span> <span class="infodata prnt_lcode"></span> </span> <span class="infotitle">Title:</span> <span class="infodata prnt_ltitle"></span> <span class="list-noguest">
<?php require "../include/clusterizator.php"; require "include/menu.php"; require "include/database.php"; require "include/info.php"; require "include/list-work.php"; requirecss("include/slider.css"); requirejs("include/slider.js"); requirejs("include/cluster.js"); clus_head(); show_menu(); get_info_or_ask(); ?> <span class="get-list-on"> Please select a list: </span> <select id="get-list-tendina" class="intersel" > </select> <span class="get-list-off"> <h1>Linear aggregation analysis of a dataset <sup><a href="../help/index.php#x1-80002.2" >?</a></sup> </h1> <span id="allright"> <img class="graceplot" id="cluplot" alt="Clusters" /> <br /> <a
<?php requirecss("include/menu.css"); requirejs("include/menu.js"); function show_menu() { global $betatest; if (isset($_GET['iframe'])) { return; } global $webdir; global $session; $menu = <<<EOF <div class=menu-box> <div class=menu> EOF; /* // Beta testing */ /* if(islogged()) { */ $menu .= <<<EOF <a class="menulink" href="{$webdir}/"> Home</a> - <a class="menulink" href="{$webdir}/explore/"> Explore</a> - <a class="menulink" href="{$webdir}/tools.php"> Tools</a> - <a class="menulink" href="{$webdir}/help/"> Help</a> EOF; if (isadmin()) { $menu .= <<<EOF
<?php require "../include/clusterizator.php"; require "include/menu.php"; require "include/database.php"; require "include/info.php"; require "include/list-work.php"; requirejs("include/slider.js"); requirecss("include/slider.css"); requirejs("include/pearson.js"); requirecss("include/pearson.css"); clus_head(); show_menu(); get_info_or_ask(); ?> <span class="get-list-second-on"> Please select two data sets: <br /> </span> <select id="get-list-tendina" class="intersel" > </select> <br /> <select id="get-list-second" class="intersel" > </select> <span class="get-list-second-off"> <h1> Local Pearson correlation coefficient tool <sup><a href="../help/index.php#x1-80002.4">?</a></sup> </h1>
<?php require "../include/clusterizator.php"; require "include/menu.php"; require "include/explore-work.php"; requirecss("include/split-iframe.css"); requirejs("include/split-iframe.js"); requirejs("include/explore.v2.js"); clus_head(); show_menu(); get_explore_info(); ?> <h1>Personal data sets</h1> <!-- <span class="notlogged">If you login with a valid account, you can add and analyze your private data sets. --> <!-- </span> --> <!-- <span class="logged"> --> <div id="pers-split" class="split-window"> <span id="ana-pers-split" class="split active-split"> <a id="a-ana-pers-split" class="splitlink template-href" href="analize.php?username=@@prnt_user@@&iframe=true"> <img class="splitimg" src="../images/stock_task.png" /> Analyze</a></span> <span id="add-pers-split" class="split"> <a id="a-add-pers-split" class="splitlink template-href" href="add.php?username=@@prnt_user@@&iframe=true"> <img class="splitimg" src="../images/stock_todo.png" /> Add</a></span> <span id="del-pers-split" class="split">
setcookie($cookieID, "", time() - 3600, $webdir, $domainname); } initialize_session(); function requirejs($js) { global $javascripts; $javascripts[] = $js; } function requirecss($css) { global $csss; $csss[] = $css; } requirecss("include/clusterizator.css"); requirejs("include/clusterizator.js"); requirejs("include/getElementsByClassName-1.0.1.js"); function islogged() { global $session; if (isset($session['privilege']) && $session['privilege'] < 2) { return TRUE; } else { return FALSE; } } function isadmin() { global $session; if (isset($session['privilege']) && $session['privilege'] == 0) { return TRUE; } else {
<?php require "../include/clusterizator.php"; require "include/menu.php"; requirejs("include/change-passwd.js"); clus_head(); show_menu(); ?> <span class="logged"> <h1> Change password </h1> <form action="javascript:void(0)" name="passwdform" method="post" onsubmit='passwd(event)'> <label>Insert old password</label><br /> <input id="oldpwd" type="password" maxlength=12 name="oldpwd" value="" /> <br /> <label>Insert new password</label><br /> <input id="newpwd" type="password" maxlength=12 name="newpwd" value="" /> <br /> <input type="submit" value="Change password"> </form> <p id="usererror"></p> </span> <?php clus_end();
<?php require "../include/clusterizator.php"; require "include/menu.php"; require "include/explore-work.php"; requirejs("include/explore-delete.js"); requirecss("include/explore.css"); clus_head(); show_menu(); get_explore_info(); ?> Select the data sets that you want to delete and then click on "Delete"<br /><br /> <form id="form-c-del-pers-split" method="get" action="javascript:void(0)" onsubmit='delete_lists(event)'> <div id="deletecontent"> </div> <input id="subbutton" type="submit" value="Delete"> </form>