function testTemplateClass()
{
    $t = new Template('index.html');
    $t->replace('FOOTER', '<b>This is the footer</b>');
    $t->replace('LOGIN_FORM', joinPaths(CHRIS_VIEW_FOLDER, 'login_form.html'));
    return $t;
}
Exemplo n.º 2
0
 function settingsInit()
 {
     $DUTINGS_DB_NAME = getenv("DUTINGS_DB_NAME");
     $DUTINGS_DB_USERNAME = getenv("DUTINGS_DB_USERNAME");
     $DUTINGS_DB_HOSTNAME = getenv("DUTINGS_DB_HOSTNAME");
     $DUTINGS_DB_PASSWORD = getenv("DUTINGS_DB_PASSWORD");
     $GOOGLE_CLIENT_ID = getenv("GOOGLE_CLIENT_ID");
     $homeDirectory = getenv('HOME');
     $settingsFilePath = "/" . joinPaths($homeDirectory, "settings/dutings.php");
     if (file_exists($settingsFilePath)) {
         require $settingsFilePath;
     }
     if (!$DUTINGS_DB_NAME) {
         throw new SettingsException("Missing database name.");
     }
     if (!$DUTINGS_DB_HOSTNAME) {
         throw new SettingsException("Missing database hostname.");
     }
     if (!$DUTINGS_DB_USERNAME) {
         throw new SettingsException("Missing database username.");
     }
     if (!$DUTINGS_DB_PASSWORD) {
         throw new SettingsException("Missing database password.");
     }
     if (!$GOOGLE_CLIENT_ID) {
         throw new SettingsException("Missing google client id.");
     }
     return ["DUTINGS_DB_HOSTNAME" => $DUTINGS_DB_HOSTNAME, "DUTINGS_DB_NAME" => $DUTINGS_DB_NAME, "DUTINGS_DB_USERNAME" => $DUTINGS_DB_USERNAME, "DUTINGS_DB_PASSWORD" => $DUTINGS_DB_PASSWORD, "GOOGLE_CLIENT_ID" => $GOOGLE_CLIENT_ID];
 }
require_once joinPaths(CHRIS_CONTROLLER_FOLDER, 'pacs.helper.php');
// include chris data models
require_once joinPaths(CHRIS_MODEL_FOLDER, 'data.model.php');
// include chris study models
require_once joinPaths(CHRIS_MODEL_FOLDER, 'study.model.php');
// include chris patient models
require_once joinPaths(CHRIS_MODEL_FOLDER, 'patient.model.php');
// include chris data_patient models
require_once joinPaths(CHRIS_MODEL_FOLDER, 'data_patient.model.php');
// include chris data_study models
require_once joinPaths(CHRIS_MODEL_FOLDER, 'data_study.model.php');
// include chris feed_data models
require_once joinPaths(CHRIS_MODEL_FOLDER, 'feed_data.model.php');
// include chris user_data models
require_once joinPaths(CHRIS_MODEL_FOLDER, 'user_data.model.php');
require_once joinPaths(CHRIS_MODEL_FOLDER, 'feed.model.php');
// define the options
$shortopts = "u:f:m:s:p:a:c:o:d:e:y:";
$options = getopt($shortopts);
$user_id = $options['u'];
$feed_chris_id = $options['f'];
$details = "";
if (isset($options['m'])) {
    $details = $options['m'];
}
$server = $options['s'];
$port = $options['p'];
$aetitle = $options['a'];
$aec = $options['c'];
$output_dir = $options['o'];
$study_uid = "";
Exemplo n.º 4
0
             // support for parameters without a flag
             $value['name'] = '--' . $value['name'];
         }
         $command .= ' ' . $value['name'] . ' ' . $value['value'];
     }
 }
 // the subfoldertail can be
 // if an input parameter is a dropzone
 // a) the parent directory of the first dropzone
 // b) information parsed from a 0.info file of the first dropzone
 // if there is no dropzone
 // c) the current timestamp
 $subfoldertail = "";
 if ($parentFolder) {
     // check for a 0.info in the $parentFolder
     $info_file = joinPaths($parentFolder, '0.info');
     if (is_file($info_file)) {
         // case b)
         $patientId = "";
         $patientAge = "";
         $patientSex = "";
         // found one, let's parse it
         $file_handle = fopen($info_file, "r");
         while (!feof($file_handle)) {
             $line = fgets($file_handle);
             // split the line at :
             $arr = explode(":", $line);
             if (trim($arr[0]) == "PatientID") {
                 $patientId = trim($arr[1]);
             } else {
                 if (trim($arr[0]) == "PatientAge") {
Exemplo n.º 5
0
 *          S&S     S&S    S&S  S&S~YSY%b   S&S    `S*S
 *          S*b     S*S    S*S  S*S   `S%b  S*S     l*S
 *          S*S.    S*S    S*S  S*S    S%S  S*S    .S*P
 *           SSSbs  S*S    S*S  S*S    S&S  S*S  sSS*S
 *            YSSP  SSS    S*S  S*S    SSS  S*S  YSS'
 *                         SP   SP          SP
 *                         Y    Y           Y
 *
 *                     R  E  L  O  A  D  E  D
 *
 * (c) 2012 Fetal-Neonatal Neuroimaging & Developmental Science Center
 *                   Boston Children's Hospital
 *
 *              http://childrenshospital.org/FNNDSC/
 *                        dev@babyMRI.org
 *
 */
// we define a valid entry point
if (!defined('__CHRIS_ENTRY_POINT__')) {
    define('__CHRIS_ENTRY_POINT__', 666);
}
//define('CHRIS_CONFIG_DEBUG',true);
// include the configuration
require_once 'config.inc.php';
// include the simpletest chris framework
require_once SIMPLETEST_CHRIS;
SimpleTest_Chris::setPreference();
// include all the tests suites
require_once joinPaths(CHRIS_CONTROLLER_FOLDER, 'testing/test.controller.php');
require_once joinPaths(CHRIS_MODEL_FOLDER, 'testing/test.model.php');
Exemplo n.º 6
0
                                         // return JSON encoded output
                                         die(json_encode($output));
                                     }
                                 }
                             }
                         }
                     }
                 }
             }
         }
     }
     break;
 case "download":
     if ($what == 'file') {
         // here we don't create JSON but just pass thru the file content
         $name = joinPaths(CHRIS_USERS, $parameters);
         // if the file does not exist, just die
         if (!is_file($name)) {
             die;
         }
         $fp = fopen($name, 'rb');
         header("Content-Length: " . filesize($name));
         header("Content-Type: application/octet-stream");
         header("Content-Disposition: attachment; filename=\"" . basename($name) . "\"");
         fpassthru($fp);
         die;
     }
 case "help":
     $result['result'] = 'Perform actions on ChRIS.. Examples: COUNT: ?action=count&what=feed --- GET: ?action=get&what=feed&id=3 --- All parameters can be GET or POST.';
     break;
 case "maintenance":
Exemplo n.º 7
0
 /**
  * Get HTML representation of the given object.
  * @param Feed $object object to be converted to HMTL.
  * @return string HTML representation of the object
  */
 public static function getHTML($object, $shine = '')
 {
     // Format username
     $username = FeedV::_getUsername($object->user_id);
     $username_displayed = ucwords($username);
     $feed_meta_simple = '';
     // Format simple meta feed
     $feedMetaSimpleMapper = new Mapper('Feed');
     $feedMetaSimpleMapper->ljoin('Meta', 'meta.target_id = feed.id')->filter('meta.target_type=(?)', 'feed')->filter('meta.name=(?)', 'sharer_id')->filter('meta.target_id=(?)', $object->id)->filter('meta.type=(?)', 'simple');
     $feedMetaSimpleResults = $feedMetaSimpleMapper->get();
     $shared_feed = false;
     if (count($feedMetaSimpleResults['Meta']) >= 1) {
         $username_displayed = 'Shared by ' . ucwords(FeedV::_getUsername($feedMetaSimpleResults['Meta'][0]->value));
         $shared_feed = true;
     }
     // Format advanced meta feed
     $root_id = 0;
     $root_id = FeedV::findFirstRootID($object->id);
     $feed_meta_advanced = $feed_meta_simple;
     $feed_status = 'feed_success';
     $feed_folder = joinPaths(CHRIS_USERS, $username, $object->plugin, $object->name . '-' . $object->id);
     if ($handle = opendir($feed_folder)) {
         while (false !== ($entry = readdir($handle))) {
             if ($entry != "." && $entry != "..") {
                 $match = glob($feed_folder . '/' . $entry . '/_chrisRun_/ERR*');
                 if (count($match)) {
                     $feed_status = 'feed_failure';
                     break;
                 }
                 if ($feed_status == 'feed_failure') {
                     break;
                 }
             }
         }
     }
     // create the status text
     $status_text = '<span style="background-color: #009DE9;color: #fff;padding: 1px 2px;">Running<i class="icon-refresh rotating_class"></i></span>';
     // ('.$object->status.'%)
     if ($feed_status == 'feed_failure') {
         $status_text = '<span style="background-color: #E90000;color: #fff;padding: 1px 2px;">Errors</span>';
         $feed_status = 'feed_success';
     } else {
         if ($object->status == 100) {
             $status_text = '<span style="background-color: #41E900;color: #fff;padding: 1px 2px;">Success</span>';
         } else {
             if ($object->status == 101) {
                 $status_text = '<span style="background-color: #E95D00;color: #fff;padding: 1px 2px;">Canceled</span>';
             }
         }
     }
     $view_icon = 'icon-eye-open';
     $share_icon = 'icon-share-alt';
     $tag_icon = 'icon-tag';
     $archive_icon = 'icon-remove';
     $archive_text = 'Archive';
     if ($object->archive == '1') {
         $archive_icon = 'icon-plus';
         $archive_text = 'Restore';
     }
     $favorite_icon = 'icon-star-empty';
     $favorite_text = 'Favorite';
     if ($object->favorite == '1') {
         $favorite_icon = 'icon-star';
         $favorite_text = '<b>Favorited</b>';
     }
     $edit_icon = '';
     $cancel = '';
     $view = "display:none";
     if ($object->status >= 100 || $shared_feed) {
         $edit_icon = "<img class='feed_edit_icon show_me focus' src='view/gfx/jigsoar-icons/dark/16_edit_page2.png'>";
         // if the job is not queued or running, don't display the cancel icon
         // also if the feed was shared
         $cancel = "display:none";
         $view = "";
     }
     $t = new Template('feed.html');
     $t->replace('ID', $object->id);
     $t->replace('ROOT_ID', $root_id);
     $feed_gfx64 = 'plugins/' . $object->plugin . '/feed.png';
     $feed_gfx64_checked = 'view/gfx/feed_checked.png';
     if (!is_file(joinPaths(CHRIS_WWWROOT, $feed_gfx64))) {
         $feed_gfx64 = 'http://placehold.it/48x48';
     }
     $t->replace('IMAGE_SRC', $feed_gfx64);
     $t->replace('IMAGE_CHECKED', $feed_gfx64_checked);
     $t->replace('USERNAME', $username_displayed);
     $t->replace('FEED_STATUS', $feed_status);
     $t->replace('FEED_NAME', $object->name);
     $t->replace('FEED_META_CONTENT', $feed_meta_advanced);
     $t->replace('TIME_FORMATED', $object->time);
     $t->replace('PLUGIN', ucwords(str_replace('_', ' ', $object->plugin)));
     $t->replace('STATUS', $object->status);
     $t->replace('STATUS_TEXT', $status_text);
     $t->replace('VIEW_ICON', $view_icon);
     $t->replace('SHARE_ICON', $share_icon);
     $t->replace('TAG_ICON', $tag_icon);
     $t->replace('ARCHIVE_ICON', $archive_icon);
     $t->replace('ARCHIVE_TEXT', $archive_text);
     $t->replace('FAVORITE_ICON', $favorite_icon);
     $t->replace('FAVORITE_TEXT', $favorite_text);
     $t->replace('VIEW', $view);
     $t->replace('CANCEL', $cancel);
     $t->replace('EDIT_ICON', $edit_icon);
     $t->replace('FEED_SHINE', $shine);
     // set data browser
     $d = new Template('feed_data_browser.html');
     $feed_folder = joinPaths($username, $object->plugin, $object->name . '-' . $object->id);
     if (file_exists($feed_folder)) {
         $feed_subfolders = scandir(CHRIS_USERS . '/' . $feed_folder);
         natcasesort($feed_subfolders);
         // get rid of eventual notes.html or index.html files
         // find notes.html
         $notes = array_search('notes.html', $feed_subfolders);
         if ($notes) {
             // remove this entry - we don't want to touch it
             unset($feed_subfolders[$notes]);
         }
         // find index.html
         $index = array_search('index.html', $feed_subfolders);
         if ($index) {
             // remove this entry - we don't want to touch it
             unset($feed_subfolders[$index]);
         }
     }
     $d->replace('FOLDER', $feed_folder);
     $d->replace('PATIENT_ID', 'fake_patient_id');
     $d->replace('DATA_ID', 'fake_data_id');
     $t->replace('DATA_BROWSER', $d);
     // set tags
     $feedtagMapper = new Mapper('Feed_Tag');
     $feedtagMapper->join('Tag', 'feed_tag.tag_id = tag.id')->filter('feed_tag.feed_id=(?)', $object->id);
     $feedtagResults = $feedtagMapper->get();
     $feedtags = '';
     if (count($feedtagResults['Feed_Tag']) >= 1) {
         foreach ($feedtagResults['Tag'] as $key => $value) {
             $n = new Template('feed_tag.html');
             $n->replace('USER_ID', $object->user_id);
             $n->replace('TAG_ID', $value->id);
             $n->replace('TAG_NAME', $value->name);
             $n->replace('TAG_COLOR', $value->color);
             $n->replace('TEXT_COLOR', invertColor($value->color));
             $n->replace('LOCATION', 'infeed');
             $feedtags .= $n;
         }
     }
     $t->replace('TAGS', $feedtags);
     // notes
     $n = new Template('feed_notes.html');
     $n->replace('PATH', joinPaths($username, $object->plugin, $object->name . '-' . $object->id, 'notes.html'));
     $t->replace('NOTES', $n);
     // set html viewer if "index.html" exists in username/plugin/feed-id/
     if (is_file(joinPaths(CHRIS_USERS, $username, $object->plugin, $object->name . '-' . $object->id, 'index.html'))) {
         $t->replace('FEED_HTML', 'feed_html.html');
         $t->replace('HTML_VIEWER', joinPaths('api.php?action=get&what=file&parameters=', $username, $object->plugin, $object->name . '-' . $object->id, 'index.html'));
     } else {
         $t->replace('FEED_HTML', '');
     }
     return $t;
 }
 *                         SP   SP          SP
 *                         Y    Y           Y
 *
 *                     R  E  L  O  A  D  E  D
 *
 * (c) 2012 Fetal-Neonatal Neuroimaging & Developmental Science Center
 *                   Boston Children's Hospital
 *
 *              http://childrenshospital.org/FNNDSC/
 *                        dev@babyMRI.org
 *
 */
// we define a valid entry point
if (!defined('__CHRIS_ENTRY_POINT__')) {
    define('__CHRIS_ENTRY_POINT__', 666);
}
//define('CHRIS_CONFIG_DEBUG',true);
// include the configuration
if (!defined('CHRIS_CONFIG_PARSED')) {
    require_once dirname(dirname(dirname(__FILE__))) . '/config.inc.php';
}
// include the simpletest chris framework
require_once SIMPLETEST_CHRIS;
SimpleTest_Chris::setPreference();
// include the test object class since we derive from that
require_once 'test.object.model.php';
// include the data_patient class
require_once joinPaths(CHRIS_MODEL_FOLDER, 'data_study.model.php');
class TestData_StudyModel extends TestObjectModel
{
}
Exemplo n.º 9
0
 /**
  * @return string
  */
 public function getCollectionPath()
 {
     return joinPaths($this->getPath(), 'collection.anki2');
 }
Exemplo n.º 10
0
 * FEED_ID is important to be able to kill a job.
 */
define('CLUSTER_RUN', 'nohup /bin/mosbatch -q -b -J{FEED_ID} -m{MEMORY} {COMMAND} < /dev/null & echo $!;');
/**
 * The cluster kill command.
 * We specify the command to terminate a job on the cluster.
 * {FEED_ID} will be replaced in the launcher with the plugin required id, in
 * the feed.controller.php
 */
define('CLUSTER_KILL', 'moskillall -9 -J{FEED_ID}');
// --------------------------------------------------------------------------
//
// TESTING
//
// --------------------------------------------------------------------------
define('SIMPLETEST_CHRIS', joinPaths(CHRIS_WWWROOT, 'testing/simpletest_chris.php'));
define('SIMPLETEST_HTML_CHRIS', joinPaths(CHRIS_WWWROOT, 'testing/html_chris.php'));
define('SIMPLETEST_XML_CHRIS', joinPaths(CHRIS_WWWROOT, 'testing/xml_chris.php'));
define('SIMPLETEST_SIMPLETEST', joinPaths(CHRIS_WWWROOT, 'lib/simpletest/simpletest.php'));
define('SIMPLETEST_AUTORUN', joinPaths(CHRIS_WWWROOT, 'lib/simpletest/autorun.php'));
// GOOGLE ANALYTICS
define('ANALYTICS_ACCOUNT', 'UA-39303022-1');
// if CHRIS_DEBUG is defined, print all constants
if (defined('CHRIS_CONFIG_DEBUG')) {
    $all_constants = get_defined_constants(true);
    print_r($all_constants['user']);
}
// setup phpseclib for SSH access
set_include_path(get_include_path() . PATH_SEPARATOR . joinPaths(CHRIS_LIB_FOLDER, 'phpseclib', 'phpseclib'));
// FLAG showing that the config was parsed
define('CHRIS_CONFIG_PARSED', true);
 *                        dev@babyMRI.org
 *
 */
// we define a valid entry point
if (!defined('__CHRIS_ENTRY_POINT__')) {
    define('__CHRIS_ENTRY_POINT__', 666);
}
// include the configuration
if (!defined('CHRIS_CONFIG_PARSED')) {
    require_once dirname(dirname(dirname(__FILE__))) . '/config.inc.php';
}
// include the simpletest chris framework
require_once SIMPLETEST_CHRIS;
SimpleTest_Chris::setPreference();
// include the controller classes
require_once joinPaths(CHRIS_CONTROLLER_FOLDER, 'pacs.class.php');
class TestPACSClass extends UnitTestCase
{
    /**
     * Test the ping method
     */
    //! [testPing()]
    public function testPing()
    {
        // ping a valid host (CHB)
        $server_ip = '134.174.12.21';
        $server_port = 104;
        $pacs_ping = new PACS($server_ip, $server_port);
        $result = $pacs_ping->ping();
        // should return 1 on success
        $this->assertTrue($result == 1);
function fixRelativePaths($path, $basePath)
{
    // absolute path
    $isColon = strrpos($path, ":") !== false;
    $isDoubleSlash = trim(startsWith($path, "//"));
    $isModxTag = startsWith(trim($path), "[[") && endsWith(trim($path), "]]");
    // relative path
    if (!$isColon && !$isDoubleSlash && !$isModxTag) {
        return joinPaths($basePath, $path);
    } else {
        return $path;
    }
}
Exemplo n.º 13
0
# don't show any errors...
error_reporting(E_ALL | E_STRICT);
# ...but do log them
session_start();
include 'config.php';
include 'utils.php';
$response_array = array();
if ($_SESSION["verify"] != "FileManager4TinyMCE") {
    $response_array['status'] = 'failure';
    $response_array['reason'] = 'Forbidden';
    returnJSON($response_array);
}
// Check to make sure we are not traversing the filesystem
if (strpos($_POST['path'], '..') !== false) {
    $response_array['status'] = 'failure';
    $response_array['reason'] = 'Forbidden Path';
    returnJSON($response_array);
}
// Join the path to our root paths
$path = joinPaths($root, $upload_dir, $_POST['path']);
$path_thumbs = joinPaths($root, $thumbs_dir, $_POST['path']);
// DELETE STUFF!!!
if (!(deleteDir($path) && deleteDir($path_thumbs))) {
    $response_array['status'] = 'failure';
    $response_array['reason'] = 'Error deleting ' . $_POST['path'];
    returnJSON($response_array);
} else {
    $response_array['status'] = 'success';
    $response_array['reason'] = 'Deleted ' . $_POST['path'];
    returnJSON($response_array);
}
}
echo "\r\n    <div class='row-fluid'>\r\n      <div class='span6'>\r\n        <div class='control-group'>\r\n          <label class='control-label' for='form_entry[machine_id]'>Machine</label>\r\n          <div class='controls'>\r\n";
display_machine_dropdown($user, "form_entry[machine_id]", $id === false ? 0 : intval($formEntry->machine['id']), intval($form->machineType['id']));
echo "          </div>\r\n        </div>\r\n        <div class='control-group'>\n";
if ($user->isAdmin()) {
    echo "          <label class='control-label' for='form_entry[machine_id]'>Performed by</label>\r\n          <div class='controls'>\n";
    display_user_dropdown($user, "form_entry[user_id]", $id === false ? $user->id : intval($formEntry->user['id']));
    echo "          </div>\n";
} else {
    echo "            <input type='hidden' name='form_entry[user_id]' value='" . ($id === false ? intval($user->id) : intval($formEntry->user['id'])) . "' />\n";
}
echo "        </div>\r\n      </div>\r\n      <div class='span6'>\r\n        <div class='control-group'>\r\n          <label class='control-label' for='form_entry[qa_month]'>QA Month</label>\r\n          <div class='controls'>\r\n    ";
display_month_year_dropdown("form_entry[qa_month]", "form_entry", $id === false ? False : array(intval($formEntry->qaMonth), intval($formEntry->qaYear)));
echo "\r\n          </div>\r\n        </div>\r\n        <div class='control-group'>\r\n          <label class='control-label' for='form_entry[created_at]'>Inspection Date</label>\r\n          <div class='controls'>\r\n            <input name='form_entry[created_at]' type='datetime-local' readonly='true' class='input-xlarge enabled' id='form_entry_created_at'" . ($id === false ? "" : " value='" . escape_output($formEntry->createdAt) . "'") . ">\r\n          </div>\r\n        </div>\r\n      </div>\r\n    </div>\r\n    <div class='row-fluid'>\r\n      <div class='span4'>\r\n        <h3 class='center-horizontal'>Contrast Scale</h3>\r\n        <h4 class='center-horizontal'>Slice 1-5 (-511 mm)</h4>\r\n        <table class='table table-bordered table-striped'>\r\n          <thead>\r\n            <tr>\r\n              <th>Plug</th>\r\n              <th>CT #</th>\r\n              <th>Nom.</th>\r\n            </tr>\r\n          </thead>\r\n          <tbody>\r\n            <tr>\r\n              <td>1</td>\r\n              <td class='control-group'><input type='number' step='0.01' name='form_entry[form_values][contrast_scale_1_value]' class='form_entry_form_values_contrast_scale_1_value span5' id='form_entry_form_values_contrast_scale_1_value' " . (!$formEntry->formValues ? "" : " value='" . escape_output($formEntry->formValues['contrast_scale_1_value']->value) . "'") . "/> &plusmn; <input type='number' step='0.01' name='form_entry[form_values][contrast_scale_1_plusmin]' class='form_entry_form_values_contrast_scale_1_plusmin span5' id='form_entry_form_values_contrast_scale_1_plusmin' " . (!$formEntry->formValues ? "" : " value='" . escape_output($formEntry->formValues['contrast_scale_1_plusmin']->value) . "'") . "/></td>\r\n              <td>-95&plusmn;15</td>\r\n            </tr>\r\n            <tr>\r\n              <td>2</td>\r\n              <td class='control-group'><input type='number' step='0.01' name='form_entry[form_values][contrast_scale_2_value]' class='form_entry_form_values_contrast_scale_2_value span5' id='form_entry_form_values_contrast_scale_2_value' " . (!$formEntry->formValues ? "" : " value='" . escape_output($formEntry->formValues['contrast_scale_2_value']->value) . "'") . "/> &plusmn; <input type='number' step='0.01' name='form_entry[form_values][contrast_scale_2_plusmin]' class='form_entry_form_values_contrast_scale_2_plusmin span5' id='form_entry_form_values_contrast_scale_2_plusmin' " . (!$formEntry->formValues ? "" : " value='" . escape_output($formEntry->formValues['contrast_scale_2_plusmin']->value) . "'") . "/></td>\r\n              <td>913&plusmn;50</td>\r\n            </tr>\r\n            <tr>\r\n              <td>3</td>\r\n              <td class='control-group'><input type='number' step='0.01' name='form_entry[form_values][contrast_scale_3_value]' class='form_entry_form_values_contrast_scale_3_value span5' id='form_entry_form_values_contrast_scale_3_value' " . (!$formEntry->formValues ? "" : " value='" . escape_output($formEntry->formValues['contrast_scale_3_value']->value) . "'") . "/>  &plusmn;  <input type='number' step='0.01' name='form_entry[form_values][contrast_scale_3_plusmin]' class='form_entry_form_values_contrast_scale_3_plusmin span5' id='form_entry_form_values_contrast_scale_3_plusmin' " . (!$formEntry->formValues ? "" : " value='" . escape_output($formEntry->formValues['contrast_scale_3_plusmin']->value) . "'") . "/></td>\r\n              <td>-988&plusmn;5</td>\r\n            </tr>\r\n            <tr>\r\n              <td>4</td>\r\n              <td class='control-group'><input type='number' step='0.01' name='form_entry[form_values][contrast_scale_4_value]' class='form_entry_form_values_contrast_scale_4_value span5' id='form_entry_form_values_contrast_scale_4_value' " . (!$formEntry->formValues ? "" : " value='" . escape_output($formEntry->formValues['contrast_scale_4_value']->value) . "'") . "/> &plusmn; <input type='number' step='0.01' name='form_entry[form_values][contrast_scale_4_plusmin]' class='form_entry_form_values_contrast_scale_4_plusmin span5' id='form_entry_form_values_contrast_scale_4_plusmin' " . (!$formEntry->formValues ? "" : " value='" . escape_output($formEntry->formValues['contrast_scale_4_plusmin']->value) . "'") . "/></td>\r\n              <td>120&plusmn;15</td>\r\n            </tr>\r\n            <tr>\r\n              <td>5</td>\r\n              <td class='control-group'><input type='number' step='0.01' name='form_entry[form_values][contrast_scale_5_value]' class='form_entry_form_values_contrast_scale_5_value span5' id='form_entry_form_values_contrast_scale_5_value' " . (!$formEntry->formValues ? "" : " value='" . escape_output($formEntry->formValues['contrast_scale_5_value']->value) . "'") . "/> &plusmn; <input type='number' step='0.01' name='form_entry[form_values][contrast_scale_5_plusmin]' class='form_entry_form_values_contrast_scale_5_plusmin span5' id='form_entry_form_values_contrast_scale_5_plusmin' " . (!$formEntry->formValues ? "" : " value='" . escape_output($formEntry->formValues['contrast_scale_5_plusmin']->value) . "'") . "/></td>\r\n              <td>0&plusmn;4</td>\r\n            </tr>\r\n          </tbody>\r\n        </table>\r\n      </div>\r\n      <div class='span4'>\r\n        <h3 class='center-horizontal'>Low Contrast Detectability</h3>\r\n        <h4 class='center-horizontal'>Slice 2-5 (-471mm) (W/L=100/100)</h4>\r\n        <table class='table table-bordered table-striped'>\r\n          <thead>\r\n          </thead>\r\n          <tbody>\r\n            <tr>\r\n              <td>See 6mm row?</td>\r\n              <td class='control-group'><input name='form_entry[form_values][low_contrast_detect_6mm_row]' class='form_entry_form_values_low_contrast_detect_6mm_row span12' id='form_entry_form_values_low_contrast_detect_6mm_row' " . (!$formEntry->formValues ? "" : " value='" . escape_output($formEntry->formValues['low_contrast_detect_6mm_row']->value) . "'") . "/></td>\r\n              <td>5</td>\r\n            </tr>\r\n          </tbody>\r\n        </table>\r\n        <h3 class='center-horizontal'>Spatial Integrity</h3>\r\n        <h4 class='center-horizontal'>Slice 3-5 (-431mm)</h4>\r\n        <table class='table table-bordered table-striped'>\r\n          <thead>\r\n            <tr>\r\n              <th>BB to BB</th>\r\n              <th>Nominal</th>\r\n            </tr>\r\n          </thead>\r\n          <tbody>\r\n            <tr>\r\n              <td class='control-group'><input type='number' step='0.01' name='form_entry[form_values][spatial_integrity_bb_to_bb]' class='form_entry_form_values_spatial_integrity_bb_to_bb span12' id='form_entry_form_values_spatial_integrity_bb_to_bb' " . (!$formEntry->formValues ? "" : " value='" . escape_output($formEntry->formValues['spatial_integrity_bb_to_bb']->value) . "'") . "/></td>\r\n              <td>100&plusmn;1</td>\r\n            </tr>\r\n          </tbody>\r\n        </table>\r\n        <h3 class='center-horizontal'>High Contrast Resolution</h3>\r\n        <h4 class='center-horizontal'>Slice 4-5 (-391mm) (W/L=100/1100)</h4>\r\n        <table class='table table-bordered table-striped'>\r\n          <thead>\r\n          </thead>\r\n          <tbody>\r\n            <tr>\r\n              <td>highest lp/cm block</td>\r\n              <td class='control-group'><input type='number' step='0.01' name='form_entry[form_values][high_contrast_resolution_max_lp_cm_block]' class='form_entry_form_values_high_contrast_resolution_max_lp_cm_block span12' id='form_entry_form_values_high_contrast_resolution_max_lp_cm_block' " . (!$formEntry->formValues ? "" : " value='" . escape_output($formEntry->formValues['high_contrast_resolution_max_lp_cm_block']->value) . "'") . "/></td>\r\n              <td>8</td>\r\n            </tr>\r\n          </tbody>\r\n        </table>\r\n      </div>\r\n      <div class='span4'>\r\n        <h3 class='center-horizontal'>Laser Position</h3>\r\n        <h4 class='center-horizontal'>Wilke Phantom</h4>\r\n        <table class='table table-bordered table-striped'>\r\n          <thead>\r\n            <tr>\r\n              <th>Laser</th>\r\n              <th>Measurement</th>\r\n              <th>Nom.</th>\r\n            </tr>\r\n          </thead>\r\n          <tbody>\r\n            <tr>\r\n              <td>Cor</td>\r\n              <td class='control-group'><input type='number' step='0.01' name='form_entry[form_values][laser_position_cor]' class='form_entry_form_values_laser_position_cor span12' id='form_entry_form_values_laser_position_cor' " . (!$formEntry->formValues ? "" : " value='" . escape_output($formEntry->formValues['laser_position_cor']->value) . "'") . "/></td>\r\n              <td>0&plusmn;2</td>\r\n            </tr>\r\n            <tr>\r\n              <td>Sag</td>\r\n              <td class='control-group'><input type='number' step='0.01' name='form_entry[form_values][laser_position_sag]' class='form_entry_form_values_laser_position_sag span12' id='form_entry_form_values_laser_position_sag' " . (!$formEntry->formValues ? "" : " value='" . escape_output($formEntry->formValues['laser_position_sag']->value) . "'") . "/></td>\r\n              <td>0&plusmn;2</td>\r\n            </tr>\r\n            <tr>\r\n              <td>Axial</td>\r\n              <td class='control-group'><input type='number' step='0.01' name='form_entry[form_values][laser_position_axial]' class='form_entry_form_values_laser_position_axial span12' id='form_entry_form_values_laser_position_axial' " . (!$formEntry->formValues ? "" : " value='" . escape_output($formEntry->formValues['laser_position_axial']->value) . "'") . "/></td>\r\n              <td>0&plusmn;2</td>\r\n            </tr>\r\n          </tbody>\r\n        </table>\r\n        <h3 class='center-horizontal'>Laser Localization</h3>\r\n        <h4 class='center-horizontal'>Pinnacle</h4>\r\n        <table class='table table-bordered table-striped'>\r\n          <thead>\r\n          </thead>\r\n          <tbody>\r\n            <tr>\r\n              <td>BB&plusmn;1mm?</td>\r\n              <td class='control-group'><select id='form_entry_form_values_laser_localization' name='form_entry[form_values][laser_localization]'>\r\n                    <option value='NULL'" . ($id != false && $formEntry->formValues['laser_localization']->value == 'NULL' ? " selected='selected'" : "") . "></option>\r\n                    <option value='Y'" . ($id != false && $formEntry->formValues['laser_localization']->value == 'Y' ? " selected='selected'" : "") . ">Y</option>\r\n                    <option value='N'" . ($id != false && $formEntry->formValues['laser_localization']->value == 'N' ? " selected='selected'" : "") . ">N</option>\r\n                  </select></td>\r\n              <td>8</td>\r\n            </tr>\r\n          </tbody>\r\n        </table>\r\n      </div>\r\n    </div>\r\n    <div class='row-fluid'>\r\n      <div class='span4'>\r\n        <h3 class='center-horizontal'>Review Daily QA Logs</h3>\r\n        <h4 class='center-horizontal'>&nbsp;</h4>\r\n        <table class='table table-bordered table-striped'>\r\n          <thead>\r\n          </thead>\r\n          <tbody>\r\n            <tr>\r\n              <td>Performed</td>\r\n              <td class='control-group'><select id='form_entry_form_values_daily_qa_logs_reviewed' name='form_entry[form_values][daily_qa_logs_reviewed]'>\r\n                    <option value='NULL'" . ($id != false && $formEntry->formValues['daily_qa_logs_reviewed']->value == 'NULL' ? " selected='selected'" : "") . "></option>\r\n                    <option value='Y'" . ($id != false && $formEntry->formValues['daily_qa_logs_reviewed']->value == 'Y' ? " selected='selected'" : "") . ">Y</option>\r\n                    <option value='N'" . ($id != false && $formEntry->formValues['daily_qa_logs_reviewed']->value == 'N' ? " selected='selected'" : "") . ">N</option>\r\n                  </select></td>\r\n            </tr>\r\n          </tbody>\r\n        </table>\r\n      </div>\r\n      <div class='span4'>\r\n        <h3 class='center-horizontal'>Table Incrementation</h3>\r\n        <h4 class='center-horizontal'>Ruler</h4>\r\n        <table class='table table-bordered table-striped'>\r\n          <thead>\r\n          </thead>\r\n          <tbody>\r\n            <tr>\r\n              <td>&plusmn;1mm?</td>\r\n              <td class='control-group'><select id='form_entry_form_values_table_incrementation' name='form_entry[form_values][table_incrementation]'>\r\n                    <option value='NULL'" . ($id != false && $formEntry->formValues['table_incrementation']->value == 'NULL' ? " selected='selected'" : "") . "></option>\r\n                    <option value='Y'" . ($id != false && $formEntry->formValues['table_incrementation']->value == 'Y' ? " selected='selected'" : "") . ">Y</option>\r\n                    <option value='N'" . ($id != false && $formEntry->formValues['table_incrementation']->value == 'N' ? " selected='selected'" : "") . ">N</option>\r\n                  </select></td>\r\n            </tr>\r\n          </tbody>\r\n        </table>\r\n      </div>\r\n      <div class='span4'>\r\n        <h3 class='center-horizontal'>Slice Thickness</h3>\r\n        <h4 class='center-horizontal'>Slice 1-5</h4>\r\n        <table class='table table-bordered table-striped'>\r\n          <thead>\r\n          </thead>\r\n          <tbody>\r\n            <tr>\r\n              <td>Slice Thickness (mm)</td>\r\n              <td class='control-group'><input type='number' step='0.01' name='form_entry[form_values][slice_thickness]' class='form_entry_form_values_slice_thickness span12' id='form_entry_form_values_slice_thickness' " . (!$formEntry->formValues ? "" : " value='" . escape_output($formEntry->formValues['slice_thickness']->value) . "'") . "/></td>\r\n              <td>3</td>\r\n            </tr>\r\n          </tbody>\r\n        </table>\r\n      </div>\r\n    </div>\r\n    <div class='row-fluid'>\r\n      <div class='span6'>\r\n        <h3 class='center-horizontal'>Field Uniformity (head)</h3>\r\n        <h4 class='center-horizontal'>Slice 3-5 (-431 mm)</h4>\r\n        <table class='table table-bordered table-striped'>\r\n          <thead>\r\n            <tr>\r\n              <th>ROI</th>\r\n              <th>CT #</th>\r\n              <th>Nominal</th>\r\n            </tr>\r\n          </thead>\r\n          <tbody>\r\n            <tr>\r\n              <td>1</td>\r\n              <td class='control-group'><input type='number' step='0.01' name='form_entry[form_values][field_uniformity_1_value]' class='form_entry_form_values_field_uniformity_1_value span12' id='form_entry_form_values_field_uniformity_1_value' " . (!$formEntry->formValues ? "" : " value='" . escape_output($formEntry->formValues['field_uniformity_1_value']->value) . "'") . "/></td>\r\n              <td>0&plusmn;5</td>\r\n            </tr>\r\n            <tr>\r\n              <td>2</td>\r\n              <td class='control-group'><input type='number' step='0.01' name='form_entry[form_values][field_uniformity_2_value]' class='form_entry_form_values_field_uniformity_2_value span12' id='form_entry_form_values_field_uniformity_2_value' " . (!$formEntry->formValues ? "" : " value='" . escape_output($formEntry->formValues['field_uniformity_2_value']->value) . "'") . "/></td>\r\n              <td>0&plusmn;5</td>\r\n            </tr>\r\n            <tr>\r\n              <td>3</td>\r\n              <td class='control-group'><input type='number' step='0.01' name='form_entry[form_values][field_uniformity_3_value]' class='form_entry_form_values_field_uniformity_3_value span12' id='form_entry_form_values_field_uniformity_3_value' " . (!$formEntry->formValues ? "" : " value='" . escape_output($formEntry->formValues['field_uniformity_3_value']->value) . "'") . "/></td>\r\n              <td>0&plusmn;5</td>\r\n            </tr>\r\n            <tr>\r\n              <td>4</td>\r\n              <td class='control-group'><input type='number' step='0.01' name='form_entry[form_values][field_uniformity_4_value]' class='form_entry_form_values_field_uniformity_4_value span12' id='form_entry_form_values_field_uniformity_4_value' " . (!$formEntry->formValues ? "" : " value='" . escape_output($formEntry->formValues['field_uniformity_4_value']->value) . "'") . "/></td>\r\n              <td>0&plusmn;5</td>\r\n            </tr>\r\n            <tr>\r\n              <td>5</td>\r\n              <td class='control-group'><input type='number' step='0.01' name='form_entry[form_values][field_uniformity_5_value]' class='form_entry_form_values_field_uniformity_5_value span12' id='form_entry_form_values_field_uniformity_5_value' " . (!$formEntry->formValues ? "" : " value='" . escape_output($formEntry->formValues['field_uniformity_5_value']->value) . "'") . "/></td>\r\n              <td>0&plusmn;5</td>\r\n            </tr>\r\n          </tbody>\r\n        </table>\r\n      </div>\r\n      <div class='span6'>\r\n        <h3 class='center-horizontal'>Noise (head)</h3>\r\n        <h4 class='center-horizontal'>Slice 3-5 (-431 mm)</h4>\r\n        <table class='table table-bordered table-striped'>\r\n          <thead>\r\n            <tr>\r\n              <th>ROI</th>\r\n              <th>Standard Deviation</th>\r\n              <th>Nominal</th>\r\n            </tr>\r\n          </thead>\r\n          <tbody>\r\n            <tr>\r\n              <td>1</td>\r\n              <td class='control-group'><input type='number' step='0.01' name='form_entry[form_values][noise_1_stddev]' class='form_entry_form_values_noise_1_stddev span12' id='form_entry_form_values_noise_1_stddev' " . (!$formEntry->formValues ? "" : " value='" . escape_output($formEntry->formValues['noise_1_stddev']->value) . "'") . "/></td>\r\n              <td>11&plusmn;2</td>\r\n            </tr>\r\n            <tr>\r\n              <td>2</td>\r\n              <td class='control-group'><input type='number' step='0.01' name='form_entry[form_values][noise_2_stddev]' class='form_entry_form_values_noise_2_stddev span12' id='form_entry_form_values_noise_2_stddev' " . (!$formEntry->formValues ? "" : " value='" . escape_output($formEntry->formValues['noise_2_stddev']->value) . "'") . "/></td>\r\n              <td>9&plusmn;2</td>\r\n            </tr>\r\n            <tr>\r\n              <td>3</td>\r\n              <td class='control-group'><input type='number' step='0.01' name='form_entry[form_values][noise_3_stddev]' class='form_entry_form_values_noise_3_stddev span12' id='form_entry_form_values_noise_3_stddev' " . (!$formEntry->formValues ? "" : " value='" . escape_output($formEntry->formValues['noise_3_stddev']->value) . "'") . "/></td>\r\n              <td>9&plusmn;2</td>\r\n            </tr>\r\n            <tr>\r\n              <td>4</td>\r\n              <td class='control-group'><input type='number' step='0.01' name='form_entry[form_values][noise_4_stddev]' class='form_entry_form_values_noise_4_stddev span12' id='form_entry_form_values_noise_4_stddev' " . (!$formEntry->formValues ? "" : " value='" . escape_output($formEntry->formValues['noise_4_stddev']->value) . "'") . "/></td>\r\n              <td>9&plusmn;2</td>\r\n            </tr>\r\n            <tr>\r\n              <td>5</td>\r\n              <td class='control-group'><input type='number' step='0.01' name='form_entry[form_values][noise_5_stddev]' class='form_entry_form_values_noise_5_stddev span12' id='form_entry_form_values_noise_5_stddev' " . (!$formEntry->formValues ? "" : " value='" . escape_output($formEntry->formValues['noise_5_stddev']->value) . "'") . "/></td>\r\n              <td>9&plusmn;2</td>\r\n            </tr>\r\n          </tbody>\r\n        </table>\r\n      </div>\r\n    </div>\r\n    <h3>Image</h3>\r\n";
if ($id != false && $formEntry->imagePath != '') {
    echo "<img src='" . joinPaths(ROOT_URL, escape_output($formEntry->imagePath)) . "' /><br />\r\n";
}
echo "    <div id='image_preview' class='row-fluid'></div>\r\n    <p>Supported formats: JPEG, PNG, GIF, WBMP, GD2</p>\r\n    <input name='form_image' class='input-file' type='file' onChange='displayImagePreview(this.files);' />\r\n    <h3>Comments</h3>\r\n    <textarea name='form_entry[comments]' id='form_entry_comments' rows='10' class='span12' placeholder='Comments go here.'>" . ($id === false ? "" : escape_output($formEntry->comments)) . "</textarea><br />\r\n    <div class='form-actions'>\r\n";
if ($id != false && $formEntry->approvedOn != '') {
    echo "      <button type='submit' class='btn btn-primary disabled' disabled='disabled'>Approved</button>\r\n";
} else {
    echo "      <button type='submit' class='btn btn-primary'>" . ($id === false ? "Save" : "Save changes") . "</button>\r\n";
}
echo "      <a class='btn' href='#' onClick='window.location.replace(document.referrer);' >" . ($id === false ? "Go back" : "Discard changes") . "</a>\r\n";
if ($id != false && $user->isPhysicist()) {
    if ($formEntry->approvedOn == '') {
        echo "      <a class='btn btn-success' href='form_entry.php?action=approve&id=" . intval($id) . "'>Approve</a>\r\n";
    } else {
        echo "      <a class='btn btn-warning' href='form_entry.php?action=unapprove&id=" . intval($id) . "'>Unapprove</a>\r\n";
    }
}
Exemplo n.º 15
0
 *                         SP   SP          SP
 *                         Y    Y           Y
 *
 *                     R  E  L  O  A  D  E  D
 *
 * (c) 2012 Fetal-Neonatal Neuroimaging & Developmental Science Center
 *                   Boston Children's Hospital
 *
 *              http://childrenshospital.org/FNNDSC/
 *                        dev@babyMRI.org
 *
 */
// we define a valid entry point
if (!defined('__CHRIS_ENTRY_POINT__')) {
    define('__CHRIS_ENTRY_POINT__', 666);
}
//define('CHRIS_CONFIG_DEBUG',true);
// include the configuration
if (!defined('CHRIS_CONFIG_PARSED')) {
    require_once dirname(dirname(dirname(__FILE__))) . '/config.inc.php';
}
// include the simpletest chris framework
require_once SIMPLETEST_CHRIS;
SimpleTest_Chris::setPreference();
// include the test object class since we derive from that
require_once 'test.object.model.php';
// include the patient class
require_once joinPaths(CHRIS_MODEL_FOLDER, 'patient.model.php');
class TestPatientModel extends TestObjectModel
{
}
Exemplo n.º 16
0
 public static function status($feedid, $status, $op)
 {
     // get $db instance
     $db = DB::getInstance();
     $db->lock('feed', 'WRITE');
     // grab the feed
     $feedResult = Mapper::getStatic('Feed', $feedid);
     if (count($feedResult['Feed']) == 0) {
         $db->unlock();
         die('Invalid feed id.');
     }
     # grab old status
     $old_status = $feedResult['Feed'][0]->status;
     $type = gettype($status);
     echo "Performing '{$op}' with value '{$status}' on current status '{$old_status}'\n";
     if ($op == 'inc') {
         // increasing mode
         echo "Increasing status of feed {$feedid} by {$status}... ";
         # increase status
         $status = $old_status + $status;
     }
     if ($op == 'set') {
         // set mode
         if ($old_status >= $status || $status > 100) {
             $db->unlock();
             die("Ignoring setting the status since the old status {$old_status} >= the new status {$status} or the old status >= 100.\n");
         } else {
             echo "Setting status of feed {$feedid} to {$status}... ";
         }
     }
     echo "status now {$status}.\n";
     # clamp the addition
     if ($status >= 100) {
         $status = 100;
         $startTime = $feedResult['Feed'][0]->time;
         $endTime = microtime(true);
         $duration = $endTime - $startTime;
         $feedResult['Feed'][0]->time = $endTime;
         $feedResult['Feed'][0]->duration = $duration;
     }
     # push to database
     $feedResult['Feed'][0]->status = $status;
     Mapper::update($feedResult['Feed'][0], $feedid);
     $db->unlock();
     # update related shared feeds
     $relatedMapper = new Mapper('Feed');
     $relatedMapper->join('Meta', 'Meta.target_id = Feed.id')->filter('Meta.name = (?)', 'root_id')->filter('Meta.value = (?)', $feedResult['Feed'][0]->id)->filter('Feed.id != (?)', $feedResult['Feed'][0]->id);
     $relatedResult = $relatedMapper->get();
     foreach ($relatedResult['Feed'] as $key => $value) {
         $relatedResult['Feed'][$key]->time = $feedResult['Feed'][0]->time;
         $relatedResult['Feed'][$key]->duration = $feedResult['Feed'][0]->duration;
         $relatedResult['Feed'][$key]->status = $feedResult['Feed'][0]->status;
         Mapper::update($relatedResult['Feed'][$key], $relatedResult['Feed'][$key]->id);
     }
     # send email if status == 100
     if ($status == 100) {
         // user's email
         $userMapper = new Mapper('User');
         $userMapper->filter('user.id = (?)', $feedResult['Feed'][0]->user_id);
         $userResult = $userMapper->get();
         // if nothing in DB yet, return -1
         if (count($userResult['User']) > 0) {
             $subject = "ChRIS2 - " . $feedResult['Feed'][0]->plugin . " plugin finished";
             $message = "Hello " . $userResult['User'][0]->username . "," . PHP_EOL . PHP_EOL;
             $message .= "Your results are available at:" . PHP_EOL . PHP_EOL;
             $dirRoot = joinPaths(CHRIS_USERS, $userResult['User'][0]->username, $feedResult['Feed'][0]->plugin, $feedResult['Feed'][0]->name . '-' . $feedResult['Feed'][0]->id);
             $dataDir = array_diff(scandir($dirRoot), array('..', '.'));
             foreach ($dataDir as $dir) {
                 $mailFilePath = $dirRoot . '/' . $dir . '/_chrisRun_/' . 'chris.mail';
                 if (file_exists($mailFilePath)) {
                     $mailContents = file_get_contents($mailFilePath);
                     $message .= $dirRoot . '/' . $dir . PHP_EOL . $mailContents . PHP_EOL . PHP_EOL;
                 } else {
                     $message .= $dirRoot . '/' . $dir . PHP_EOL . PHP_EOL;
                 }
             }
             $message .= "Thank you for using ChRIS.";
             echo "Sending email to " . $userResult['User'][0]->email . " since the status is '{$status}'%.\n";
             // get user email address
             email(CHRIS_PLUGIN_EMAIL_FROM, $userResult['User'][0]->email, $subject, $message);
         }
     }
 }
Exemplo n.º 17
0
         }
         ?>
           </figure>
         </li>
         <?php 
         $k++;
     }
     // if (isDir)
 }
 // foreach (Folders)
 //List Files after all folders have been listed
 foreach ($files as $nu => $file) {
     //define convenience variables for this file
     $file_path = joinPaths($cur_upload_path, $file);
     $file_relative_path = joinPaths($subdir, $file);
     $file_thumb_path = joinPaths($cur_thumbs_path, $file);
     $file_url = joinURL($cur_upload_url, $file);
     $file_thumb_url = joinURL($cur_thumbs_url, $file);
     if ($file != '.' && $file != '..' && $file[0] != '.' && !is_dir($file_path)) {
         $is_img = false;
         $is_video = false;
         $show_original = false;
         $file_ext = substr(strrchr($file, '.'), 1);
         if (in_array($file_ext, $ext)) {
             if (in_array($file_ext, $ext_img)) {
                 $src = $file_url;
                 $src_thumb = $file_thumb_url;
                 //add to thumbs folder if not already
                 if (!file_exists($file_thumb_path)) {
                     create_img_gd($file_path, $file_thumb_path, $thumbnail_width, $thumbnail_height);
                 }
Exemplo n.º 18
0
 *                     R  E  L  O  A  D  E  D
 *
 * (c) 2012 Fetal-Neonatal Neuroimaging & Developmental Science Center
 *                   Boston Children's Hospital
 *
 *              http://childrenshospital.org/FNNDSC/
 *                        dev@babyMRI.org
 *
 */
// prevent direct calls
if (!defined('__CHRIS_ENTRY_POINT__')) {
    die('Invalid access.');
}
// include the configuration
require_once dirname(dirname(__FILE__)) . '/config.inc.php';
require_once joinPaths(CHRIS_CONTROLLER_FOLDER, 'user.controller.php');
interface SecurityControllerInterface
{
    public static function login_attempt();
    public static function logout_attempt();
    public static function login();
    public static function logout();
}
// here, we always need a session started
session_start();
/**
 * Security controller class
 */
class SecurityC implements SecurityControllerInterface
{
    public static function login_attempt()
Exemplo n.º 19
0
<?php

ini_set('display_errors', '0');
# don't show any errors...
error_reporting(E_ALL | E_STRICT);
# ...but do log them
session_start();
if ($_SESSION["verify"] != "FileManager4TinyMCE") {
    die('forbidden');
}
include 'config.php';
include 'utils.php';
if (empty($_POST['path'])) {
    die('Forbidden Path');
}
$path = joinPaths($root, $upload_dir, $_POST['path']);
$path = str_replace(LC_DS . '..', '', $path);
$name = $_POST['name'];
if (!file_exists($path)) {
    die('File not found');
}
header('Pragma: private');
header('Cache-control: private, must-revalidate');
header("Content-Type: application/octet-stream");
header("Content-Length: " . (string) filesize($path));
header('Content-Disposition: attachment; filename="' . $name . '"');
readfile($path);
exit;
Exemplo n.º 20
0
$arguments .= ' -c "' . $runfile . '"';
$arguments .= ' -u "' . $username . '"';
$arguments .= ' -p "' . $password . '"';
$arguments .= ' -o "' . $feed_path . '"';
if ($force_chris_local) {
    // get user group id
    $groupID = $ssh->exec("id -g");
    $groupID = trim($groupID);
    // open permissions so user can see its plugin running
    $local_command = "/bin/chgrp -R {$groupID} {$feed_path}; /bin/chmod g+rxw -R {$feed_path}";
    $ssh->exec($local_command);
    unset($ssh);
    # run command as locally ChRIS!
    $ssh2 = new Net_SSH2('localhost');
    $key = new Crypt_RSA();
    $sshkey = joinPaths(CHRIS_HOME, '.ssh/id_rsa');
    $key->loadKey(file_get_contents($sshkey));
    if (!$ssh2->login('chris', $key)) {
        exit('Login as ChRIS local user failed...!');
    }
    $local_command = "/bin/bash umask 0002;/bin/bash {$runfile};";
    $nohup_wrap = 'bash -c \'nohup bash -c "' . $local_command . '" > /dev/null 2>&1 &\'';
    $ssh2->exec($nohup_wrap);
    $pid = -1;
} else {
    if ($status == 100) {
        // run locally
        $ssh->exec('bash -c \' /bin/bash ' . $runfile . '\'');
        $pid = -1;
    } else {
        // run on cluster and return pid
Exemplo n.º 21
0
include 'utils.php';
// Upload is restricted for the non-admin users
if (!\XLite\Core\Auth::getInstance()->isAdmin()) {
    die('forbidden');
}
if (!empty($_FILES) && $upload_files) {
    $tempFile = $_FILES['file']['tmp_name'];
    $pathinfo = pathinfo(strtolower($_FILES['file']['name']));
    $fileExt = isset($pathinfo['extension']) ? '.' . $pathinfo['extension'] : '';
    $fileName = $pathinfo['filename'] . $fileExt;
    $targetFile = joinPaths($root, $upload_dir, $_POST['path'], $fileName);
    $targetFileThumb = joinPaths($root, $thumbs_dir, $_POST['path'], $fileName);
    if (file_exists($targetFile) || file_exists($targetFileThumb)) {
        $fileName = $pathinfo['filename'] . '_' . hash('md4', $pathinfo['filename']) . $fileExt;
        $targetFile = joinPaths($root, $upload_dir, $_POST['path'], $fileName);
        $targetFileThumb = joinPaths($root, $thumbs_dir, $_POST['path'], $fileName);
    }
    move_uploaded_file($tempFile, $targetFile);
    $is_img = in_array(substr(strrchr($fileName, '.'), 1), $ext_img) ? true : false;
    if ($is_img) {
        create_img_gd($targetFile, $targetFileThumb, $thumbnail_width, $thumbnail_height);
        $imginfo = getimagesize($targetFile);
        $srcWidth = $imginfo[0];
        $srcHeight = $imginfo[1];
        if ($image_resizing) {
            if ($image_width == 0) {
                if ($image_height == 0) {
                    $image_width = $srcWidth;
                    $image_height = $srcHeight;
                } else {
                    $image_width = $image_height * $srcWidth / $srcHeight;
// A Beautiful Site (http://abeautifulsite.net/)
// 24 March 2008
//
// History:
//
// 1.01 - updated to work with foreign characters in directory/file names (12 April 2008)
// 1.00 - released (24 March 2008)
//
// Output a list of files for jQuery File Tree
//
// we define a valid entry point
define('__CHRIS_ENTRY_POINT__', 666);
// include the configuration
require_once dirname(dirname(__FILE__)) . '/config.inc.php';
require_once joinPaths(CHRIS_CONTROLLER_FOLDER, 'security.controller.php');
require_once joinPaths(CHRIS_CONTROLLER_FOLDER, 'template.class.php');
$shortopts = "d:h";
$longopts = array("directory:", "help");
$options = getopt($shortopts, $longopts);
if (array_key_exists('h', $options) || array_key_exists('help', $options)) {
    echo "this is the help!";
    echo "\n";
    return;
}
//if no command provided, exit
$directory = '';
if (array_key_exists('d', $options)) {
    $directory = $options['d'];
} elseif (array_key_exists('directory', $options)) {
    $directory = $options['directory'];
} else {
Exemplo n.º 23
0
    public function testSettingsWithSettingsFile()
    {
        $homeDirectory = getenv('HOME');
        $settingsFolderPath = "/" . joinPaths($homeDirectory, "settings");
        if (!file_exists($settingsFolderPath)) {
            mkdir($settingsFolderPath, 0755, true);
        }
        $settingsFilePath = "/" . joinPaths($homeDirectory, "settings/dutings.php");
        $settingsFile = fopen($settingsFilePath, "w");
        $txt = '<?php
$DUTINGS_DB_NAME = "' . $this->DUTINGS_DB_NAME . '";
$DUTINGS_DB_USERNAME = "******";
$DUTINGS_DB_HOSTNAME = "' . $this->DUTINGS_DB_HOSTNAME . '";
$DUTINGS_DB_PASSWORD = "******";
$GOOGLE_CLIENT_ID="' . $this->GOOGLE_CLIENT_ID . '";';
        fwrite($settingsFile, $txt);
        fclose($settingsFile);
        putenv('DUTINGS_DB_NAME');
        putenv('DUTINGS_DB_USERNAME');
        putenv('DUTINGS_DB_HOSTNAME');
        putenv('DUTINGS_DB_PASSWORD');
        putenv('GOOGLE_CLIENT_ID');
        $settings = (require PROJECT_ROOT . "/app/settings.php");
        $this->assertNotEquals($settings, null);
    }
function start_html($user, $title = "UC Medicine QA", $subtitle = "", $status = "", $statusClass = "")
{
    echo '<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN"
        "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">' . "\n\n" . '<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
  <head>
  	<meta http-equiv="content-type" content="text/html; charset=utf-8" />
    <meta name="viewport" content="width=device-width, initial-scale=1.0">
  	<title>' . escape_output($title) . ($subtitle != "" ? " - " . escape_output($subtitle) : "") . '</title>
  	<link rel="shortcut icon" href="http://ucmcqa.dyndns.org/favicon.ico" />
  	<link rel="stylesheet" href="' . joinPaths(ROOT_URL, "css/bootstrap.min.css") . '" type="text/css" />
  	<link rel="stylesheet" href="' . joinPaths(ROOT_URL, "css/bootstrap-responsive.min.css") . '" type="text/css" media="all" />
  	<link rel="stylesheet" href="http://ajax.googleapis.com/ajax/libs/jqueryui/1.8/themes/base/jquery-ui.css" type="text/css" />
  	<link rel="stylesheet" href="' . joinPaths(ROOT_URL, "css/jquery.dataTables.css") . '" type="text/css" />
    <link rel="stylesheet" href="' . joinPaths(ROOT_URL, "css/linac-qa.css") . '" type="text/css" />
    <link rel="stylesheet" href="' . joinPaths(ROOT_URL, "css/print.css") . '" type="text/css" media="print" />
    <script type="text/javascript" src="https://ajax.googleapis.com/ajax/libs/jquery/1.7.2/jquery.min.js"></script>
    <script type="text/javascript" src="https://ajax.googleapis.com/ajax/libs/jqueryui/1.8.18/jquery-ui.min.js"></script>
    <script type="text/javascript" src="' . joinPaths(ROOT_URL, "js/jquery-ui-timepicker-addon.js") . '"></script>
  	<script type="text/javascript" language="javascript" src="' . joinPaths(ROOT_URL, "js/jquery.dropdownPlain.js") . '"></script>
    <script type="text/javascript" language="javascript" src="' . joinPaths(ROOT_URL, "js/jquery.dataTables.min.js") . '"></script>
    <script type="text/javascript" language="javascript" src="' . joinPaths(ROOT_URL, "js/jquery.autosave.js") . '"></script>
    <script type="text/javascript" src="' . joinPaths(ROOT_URL, "js/d3.v2.min.js") . '"></script>
    <script type="text/javascript" src="' . joinPaths(ROOT_URL, "js/d3-helpers.js") . '"></script>
    <script type="text/javascript" src="' . joinPaths(ROOT_URL, "js/highcharts.js") . '"></script>
    <script type="text/javascript" src="' . joinPaths(ROOT_URL, "js/exporting.js") . '"></script>
  	<script type="text/javascript" language="javascript" src="' . joinPaths(ROOT_URL, "js/calcFunctions.js") . '"></script>
  	<script type="text/javascript" language="javascript" src="' . joinPaths(ROOT_URL, "js/renderHighCharts.js") . '"></script>
  	<script type="text/javascript" language="javascript" src="' . joinPaths(ROOT_URL, "js/bootstrap.min.js") . '"></script>
  	<script type="text/javascript" language="javascript" src="' . joinPaths(ROOT_URL, "js/bootstrap-dropdown.js") . '"></script>
  	<script type="text/javascript" language="javascript" src="' . joinPaths(ROOT_URL, "js/loadInterface.js") . '"></script>
  </head>
  <body>
    <div class="navbar navbar-inverse navbar-fixed-top">
      <div class="navbar-inner">
        <div class="container-fluid">
          <a class="btn btn-navbar" data-toggle="collapse" data-target=".nav-collapse">
            <span class="icon-bar"></span>
            <span class="icon-bar"></span>
            <span class="icon-bar"></span>
          </a>
          <a href="./index.php" class="brand">UC Medicine QA</a>
          <div class="nav-collapse">
            <ul class="nav">' . "\n";
    // display daily, monthly, yearly forms.
    if ($user->loggedIn()) {
        $formTypes = $user->dbConn->stdQuery("SELECT `id`, `name` FROM `form_types` ORDER BY `id` ASC");
        while ($formType = $formTypes->fetch_assoc()) {
            $formType = new FormType($user->dbConn, intval($formType['id']));
            echo '                <li class="dropdown">
                  <a href="#" class="dropdown-toggle" data-toggle="dropdown">
                    ' . escape_output($formType->name) . '
                    <b class="caret"></b>
                  </a>
                  <ul class="dropdown-menu">' . "\n";
            foreach ($formType->forms as $form) {
                echo '                    <li><a href="form_entry.php?action=new&form_id=' . intval($form['id']) . '">' . escape_output($form['name']) . '</a></li>' . "\n";
            }
            echo '                  </ul>
                </li>
                <li class="divider-vertical"></li>' . "\n";
        }
        // display analysis toolbar.
        echo '                <li class="dropdown">
                  <a href="#" class="dropdown-toggle" data-toggle="dropdown">
                    Analysis
                    <b class="caret"></b>
                  </a>
                  <ul class="dropdown-menu">' . "\n";
        $forms = $user->dbConn->stdQuery("SELECT `id`, `name` FROM `forms` ORDER BY `name` ASC");
        while ($form = $forms->fetch_assoc()) {
            echo '                        <li class="dropdown-submenu">
                          <a tabindex="-1" href="#">' . escape_output($form['name']) . '</a>
                          <ul class="dropdown-menu">
                            <li><a href="form_entry.php?action=index&form_id=' . intval($form['id']) . '">Entries</a></li>
                            <li><a href="graph.php?action=show&form_id=' . intval($form['id']) . '">Plot</a></li>
                          </ul>' . "\n";
        }
        echo '                  </ul>' . "\n";
    }
    // display administrator tools.
    if ($user->isAdmin()) {
        echo '                <li class="dropdown">
                  <a href="#" class="dropdown-toggle" data-toggle="dropdown">
                    Admin
                    <b class="caret"></b>
                  </a>
                  <ul class="dropdown-menu">
                    <li><a href="facility.php">Facilities</a></li>
                    <li><a href="form.php">Forms</a></li>
                    <li><a href="machine_type.php">Machine Types</a></li>
                    <li><a href="machine.php">Machines</a></li>
                    <li><a href="user.php">Users</a></li>
                    <li><a href="backup.php">Backup</a></li>
                  </ul>
                </li>
                <li class="divider-vertical"></li>' . "\n";
    }
    echo '            </ul>
            <ul class="nav pull-right">
              <li class="divider-vertical"></li>
              <li class="dropdown">' . "\n";
    // display user settings / log out link, or sign in form.
    if ($user->loggedIn()) {
        echo '                <a href="#" class="dropdown-toggle" data-toggle="dropdown"><i class="icon-user icon-white"></i>' . escape_output($user->name) . '<b class="caret"></b></a>
                <ul class="dropdown-menu">
                  <li><a href="/user.php?action=show&id=' . intval($user->id) . '">Profile</a></li>
                  <li><a href="/user.php?action=edit&id=' . intval($user->id) . '">User Settings</a></li>
                  <li class="divider"></li>
                  <li><a href="/logout.php">Sign out</a></li>
                </ul>' . "\n";
    } else {
        echo '                <a href="#" class="dropdown-toggle" data-toggle="dropdown">Sign in<b class="caret"></b></a>
                <ul class="dropdown-menu">' . "\n";
        display_login_form();
        echo '                </ul>' . "\n";
    }
    echo '              </li>
            </ul>
          </div>
        </div>
      </div>
    </div>
    <div class="container-fluid">' . "\n";
    // display alerts if applicable.
    if ($status != "") {
        echo '    <div class="alert alert-' . escape_output($statusClass) . '">
      <button class="close" data-dismiss="alert" href="#">×</button>
      ' . escape_output($status) . '
    </div>' . "\n";
    }
}
 public function create_or_update($form_entry)
 {
     // creates or updates the current form entry with the information in $form_entry
     // returns a redirect_to array.
     if ($this->id != 0) {
         //update this form entry.
         foreach ($form_entry['form_values'] as $name => $value) {
             if ($value == 'NULL') {
                 continue;
             }
             $findField = $this->dbConn->queryFirstValue("SELECT `id` FROM `form_fields` WHERE `form_id` = " . intval($form_entry['form_id']) . " && `name` = " . $this->dbConn->quoteSmart($name));
             if (!$findField) {
                 $insertField = $this->dbConn->stdQuery("INSERT INTO `form_fields` (`form_id`, `name`) VALUES (" . intval($form_entry['form_id']) . ", " . $this->dbConn->quoteSmart($name) . ")");
                 $findField = $this->dbConn->insert_id;
             }
             $insertOrUpdateValue = $this->dbConn->stdQuery("INSERT INTO `form_values` (`value`, `form_field_id`, `form_entry_id`) VALUES (" . $this->dbConn->quoteSmart($value) . ", " . intval($findField) . ", " . intval($this->id) . ") ON DUPLICATE KEY UPDATE `value` = " . $this->dbConn->quoteSmart($value));
         }
         // process uploaded image.
         $file_array = $_FILES['form_image'];
         $imagePath = "";
         if (!empty($file_array['tmp_name']) && is_uploaded_file($file_array['tmp_name'])) {
             if ($file_array['error'] != UPLOAD_ERR_OK) {
                 return array('location' => 'form_entry.php?action=edit&id=' . intval($this->id), 'status' => "There was an error uploading your image file.", 'class' => 'error');
             }
             $file_contents = file_get_contents($file_array['tmp_name']);
             if (!$file_contents) {
                 return array('location' => 'form_entry.php?action=edit&id=' . intval($this->id), 'status' => "Could not read contents of uploaded image file.", 'class' => 'error');
             }
             $newIm = @imagecreatefromstring($file_contents);
             if (!$newIm) {
                 return array('location' => 'form_entry.php?action=edit&id=' . intval($this->id), 'status' => "The image file you uploaded is invalid.", 'class' => 'error');
             }
             $imageSize = getimagesize($file_array['tmp_name']);
             if ($imageSize[0] > 5000 || $imageSize[1] > 5000) {
                 return array('location' => 'form_entry.php?action=edit&id=' . intval($this->id), 'status' => "The maximum allowed size for images is 5000x5000 pixels.", 'class' => 'error');
             }
             // move file to destination and save path in db.
             if (!is_dir(joinPaths($_SERVER[''], "uploads", "forms", intval($form_entry['form_id'])))) {
                 mkdir(joinPaths($_SERVER[''], "uploads", "forms", intval($form_entry['form_id'])));
             }
             $imagePathInfo = pathinfo($file_array['tmp_name']);
             $imagePath = joinPaths("uploads", "forms", intval($form_entry['form_id']), $form_entry['id'] . image_type_to_extension($imageSize[2]));
             if (!move_uploaded_file($file_array['tmp_name'], $imagePath)) {
                 return array('location' => 'form_entry.php?action=edit&id=' . intval($this->id), 'status' => "There was an error moving your uploaded file.", 'class' => 'error');
             }
         } else {
             $imagePath = $this->imagePath;
         }
         $updateFormEntry = $this->dbConn->stdQuery("UPDATE `form_entries` SET `user_id` = " . intval($form_entry['user_id']) . ", `machine_id` = " . intval($form_entry['machine_id']) . ", `comments` = " . $this->dbConn->quoteSmart($form_entry['comments']) . ", `image_path` = " . $this->dbConn->quoteSmart($imagePath) . ", `created_at` = '" . date('Y-m-d H:i:s', strtotime($form_entry['created_at'])) . "', `qa_month` = " . intval($form_entry['qa_month']) . ", `qa_year` = " . intval($form_entry['qa_year']) . ", `updated_at` = '" . date('Y-m-d H:i:s') . "' WHERE `id` = " . intval($form_entry['id']) . " LIMIT 1");
         return array('location' => 'form_entry.php?action=index&form_id=' . $form_entry['form_id'], 'status' => "Successfully updated form entry.", 'class' => 'success');
     } else {
         // inserting a form entry.
         // ensure that this form exists.
         $checkForm = $this->dbConn->queryCount("SELECT COUNT(*) FROM `forms` WHERE `id` = " . intval($form_entry['form_id']));
         if (!$checkForm || $checkForm != 1) {
             return array('location' => 'form_entry.php?action=new' . (isset($form_entry['form_id']) ? "&form_id=" . intval($form_entry['form_id']) : ""), 'status' => "The specified form does not exist.", 'class' => 'error');
         }
         $insertEntry = $this->dbConn->stdQuery("INSERT INTO `form_entries` (`form_id`, `machine_id`, `user_id`, `comments`, `image_path`, `created_at`, `qa_month`, `qa_year`, `updated_at`) VALUES (" . intval($form_entry['form_id']) . ", " . intval($form_entry['machine_id']) . ", " . intval($form_entry['user_id']) . ", " . $this->dbConn->quoteSmart($form_entry['comments']) . ", '', '" . date('Y-m-d H:i:s', strtotime($form_entry['created_at'])) . "', " . intval($form_entry['qa_month']) . ", " . intval($form_entry['qa_year']) . ", '" . date('Y-m-d H:i:s') . "')");
         $form_entry['id'] = intval($this->dbConn->insert_id);
         $valueQueryArray = [];
         foreach ($form_entry['form_values'] as $name => $value) {
             $findField = $this->dbConn->queryFirstValue("SELECT `id` FROM `form_fields` WHERE `form_id` = " . intval($form_entry['form_id']) . " && `name` = " . $this->dbConn->quoteSmart($name));
             if (!$findField) {
                 $insertField = $this->dbConn->stdQuery("INSERT INTO `form_fields` (`form_id`, `name`) VALUES (" . intval($form_entry['form_id']) . ", " . $this->dbConn->quoteSmart($name) . ")");
                 $findField = $this->dbConn->insert_id;
             }
             if ($value != '') {
                 $valueQueryArray[] = "(" . $this->dbConn->quoteSmart($value) . ", " . intval($findField) . ", " . intval($form_entry['id']) . ")";
             }
         }
         $insertFormValues = $this->dbConn->stdQuery("INSERT INTO `form_values` (`value`, `form_field_id`, `form_entry_id`) VALUES " . implode(",", $valueQueryArray));
         if (!$insertFormValues) {
             return array('location' => 'form_entry.php?action=new' . (isset($form_entry['form_id']) ? "&form_id=" . intval($form_entry['form_id']) : ""), 'status' => "Error while inserting form entry. Please try again.", 'class' => 'error');
         }
         // process uploaded image (if there is one)
         $file_array = $_FILES['form_image'];
         if (!empty($file_array['tmp_name']) && is_uploaded_file($file_array['tmp_name'])) {
             if ($file_array['error'] != UPLOAD_ERR_OK) {
                 return array('location' => 'form_entry.php?action=new' . (isset($form_entry['form_id']) ? "&form_id=" . intval($form_entry['form_id']) : ""), 'status' => "There was an error uploading your image file.", 'class' => 'error');
             }
             $file_contents = file_get_contents($file_array['tmp_name']);
             if (!$file_contents) {
                 return array('location' => 'form_entry.php?action=new' . (isset($form_entry['form_id']) ? "&form_id=" . intval($form_entry['form_id']) : ""), 'status' => "Could not read contents of uploaded image file.", 'class' => 'error');
             }
             $newIm = @imagecreatefromstring($file_contents);
             if (!$newIm) {
                 return array('location' => 'form_entry.php?action=new' . (isset($form_entry['form_id']) ? "&form_id=" . intval($form_entry['form_id']) : ""), 'status' => "The image file you uploaded is invalid.", 'class' => 'error');
             }
             $imageSize = getimagesize($file_array['tmp_name']);
             if ($imageSize[0] > 5000 || $imageSize[1] > 5000) {
                 return array('location' => 'form_entry.php?action=new' . (isset($form_entry['form_id']) ? "&form_id=" . intval($form_entry['form_id']) : ""), 'status' => "The maximum allowed size for images is 5000x5000 pixels.", 'class' => 'error');
             }
             // move file to destination and save path in db.
             if (!is_dir(joinPaths($_SERVER[''], "uploads", "forms", $form_entry['form_id']))) {
                 mkdir(joinPaths($_SERVER[''], "uploads", "forms", $form_entry['form_id']));
             }
             $imagePathInfo = pathinfo($file_array['tmp_name']);
             $imagePath = joinPaths("uploads", "forms", $form_entry['form_id'], $form_entry['id'] . '.' . $imagePathInfo['extension']);
             if (!move_uploaded_file($file_array['tmp_name'], $imagePath)) {
                 return array('location' => 'form_entry.php?action=new' . (isset($form_entry['form_id']) ? "&form_id=" . intval($form_entry['form_id']) : ""), 'status' => "There was an error moving your uploaded file.", 'class' => 'error');
             }
             $updateImagePath = $this->dbConn->stdQuery("UPDATE `form_entries` SET `image_path` = " . $this->dbConn->quoteSmart($imagePath) . " WHERE `id` = " . intval($form_entry['id']) . " LIMIT 1");
         }
         return array('location' => 'form_entry.php?action=index&form_id=' . intval($form_entry['form_id']), 'status' => "Successfully inserted form entry.", 'class' => 'success');
     }
 }
Exemplo n.º 26
0
 *                        dev@babyMRI.org
 *
 *
 * Quick example:
 *
 *      ./query.php --studydate=20130416 --modality=MR
 *
 *
 */
if (!defined('__CHRIS_ENTRY_POINT__')) {
    define('__CHRIS_ENTRY_POINT__', 666);
}
// include the configuration
require_once dirname(dirname(dirname(dirname(__FILE__)))) . '/config.inc.php';
// include pacs helper
require_once joinPaths(CHRIS_CONTROLLER_FOLDER, 'pacs.helper.php');
// check if we are invoked by commandline
$commandline_mode = php_sapi_name() == 'cli';
if ($commandline_mode) {
    // parse the options if we are in commandline mode
    // define the options
    $shortopts = "s::p::a::c::i::n::d::m::t::y::e::x::h";
    $longopts = array("serverip::", "serverport::", "useraetitle::", "useraec::", "patientid::", "patientname::", "studydate::", "modality::", "studydescription::", "seriesdescription::", "station::", "sex::", "help");
    $options = getopt($shortopts, $longopts);
    if (array_key_exists('h', $options) || array_key_exists('help', $options)) {
        echo "this is the help!";
        echo "\n";
        return;
    }
    //if no command provided, exit
    $serverip = '134.174.12.21';
Exemplo n.º 27
0
 *                         SP   SP          SP
 *                         Y    Y           Y
 *
 *                     R  E  L  O  A  D  E  D
 *
 * (c) 2012 Fetal-Neonatal Neuroimaging & Developmental Science Center
 *                   Boston Children's Hospital
 *
 *              http://childrenshospital.org/FNNDSC/
 *                        dev@babyMRI.org
 *
 */
// we define a valid entry point
if (!defined('__CHRIS_ENTRY_POINT__')) {
    define('__CHRIS_ENTRY_POINT__', 666);
}
//define('CHRIS_CONFIG_DEBUG',true);
// include the configuration
if (!defined('CHRIS_CONFIG_PARSED')) {
    require_once dirname(dirname(dirname(__FILE__))) . '/config.inc.php';
}
// include the simpletest chris framework
require_once SIMPLETEST_CHRIS;
SimpleTest_Chris::setPreference();
// include the test object class since we derive from that
require_once 'test.object.model.php';
// include the user_data class
require_once joinPaths(CHRIS_MODEL_FOLDER, 'user_data.model.php');
class TestUser_DataModel extends TestObjectModel
{
}
Exemplo n.º 28
0
function tempdir(&$ssh, $dir = false, $prefix = '_chrisRun_')
{
    // $dirname  = uniqid($prefix, false);
    $dirname = $prefix;
    $tempdir = joinPaths($dir, $dirname);
    $message = $ssh->exec('bash -c \'umask 0002 ; mkdir -p ' . $tempdir . '\'');
    # empty return message on mkdir means success
    if ($message == '') {
        return $tempdir;
    }
    echo '_chrisRun_ could not be created in dir $dir -- possible permission issue: ' . $message . PHP_EOL;
}
Exemplo n.º 29
0
 *
 * (c) 2012 Fetal-Neonatal Neuroimaging & Developmental Science Center
 *                   Boston Children's Hospital
 *
 *              http://childrenshospital.org/FNNDSC/
 *                        dev@babyMRI.org
 *
 */
// prevent direct calls
if (!defined('__CHRIS_ENTRY_POINT__')) {
    die('Invalid access.');
}
// include the configuration
require_once dirname(dirname(__FILE__)) . '/config.inc.php';
require_once joinPaths(CHRIS_CONTROLLER_FOLDER, 'mapper.class.php');
require_once joinPaths(CHRIS_MODEL_FOLDER, 'token.model.php');
require_once 'Net/SSH2.php';
// interface
interface TokenControllerInterface
{
    // Create a new token and return it.
    public static function create();
    // Validate a token.
    public static function validate($token);
}
/**
 * Feed controller class
 */
class TokenC implements TokenControllerInterface
{
    /**
Exemplo n.º 30
0
 */
// we define a valid entry point
if (!defined('__CHRIS_ENTRY_POINT__')) {
    define('__CHRIS_ENTRY_POINT__', 666);
}
// include the configuration file
if (!defined('CHRIS_CONFIG_PARSED')) {
    require_once dirname(dirname(__FILE__)) . '/config.inc.php';
}
// create log file
$logFile = joinPaths(CHRIS_LOG, date('YmdHis') . '-pacs_pull_listen.log');
while (!file_exists($logFile)) {
    if (touch($logFile)) {
        break;
    }
    $logFile = joinPaths(CHRIS_LOG, date('YmdHis') . '-pacs_pull_listen.log');
}
$fullReport = '';
// CREATE UNIQUE DIRECTORY
$tmpdirname = CHRIS_TMP . '/' . date('Ymdhis');
while (!is_dir($tmpdirname)) {
    if (mkdir($tmpdirname)) {
        break;
    }
    $tmpdirname .= date('s');
}
//write log
$startReportPretty = "=========================================" . PHP_EOL;
$report = date('Y-m-d h:i:s') . ' ---> Create unique tmp directory...' . PHP_EOL;
$report .= $tmpdirname . PHP_EOL;
$fullReport .= $report;