/** @group Functional */
public function testRunMonkScan()
{
$this->setUpTables();
$this->setUpRepo();
list($output, $retCode) = $this->runMonk($uploadId = 1);
$this->rmRepo();
$this->assertEquals($retCode, 0, 'monk failed: ' . $output);
$this->assertEquals(6, $this->getHeartCount($output));
$bounds = $this->uploadDao->getParentItemBounds($uploadId);
$matches = $this->licenseDao->getAgentFileLicenseMatches($bounds);
$this->assertEquals($expected = 2, count($matches));
/** @var LicenseMatch */
$licenseMatch = $matches[0];
$this->assertEquals($expected = 4, $licenseMatch->getFileId());
/** @var LicenseRef */
$matchedLicense = $licenseMatch->getLicenseRef();
$this->assertEquals($matchedLicense->getShortName(), "GPL-3.0");
/** @var AgentRef */
$agentRef = $licenseMatch->getAgentRef();
$this->assertEquals($agentRef->getAgentName(), "monk");
$highlights = $this->highlightDao->getHighlightDiffs($this->uploadDao->getItemTreeBounds(7));
$expectedHighlight = new Highlight(18, 35825, Highlight::MATCH, 20, 35819);
$expectedHighlight->setLicenseId($matchedLicense->getId());
$this->assertEquals(array($expectedHighlight), $highlights);
$highlights = $this->highlightDao->getHighlightDiffs($this->uploadDao->getItemTreeBounds(11));
$expectedHighlights = array();
$expectedHighlights[] = new Highlight(18, 339, Highlight::MATCH, 20, 350);
$expectedHighlights[] = new Highlight(340, 347, Highlight::CHANGED, 351, 357);
$expectedHighlights[] = new Highlight(348, 35149, Highlight::MATCH, 358, 35819);
foreach ($expectedHighlights as $expectedHighlight) {
$expectedHighlight->setLicenseId($matchedLicense->getId());
}
assertThat($highlights, containsInAnyOrder($expectedHighlights));
}
protected function setUp()
{
$this->htmlElement = M::mock('Fossology\\Lib\\Html\\HtmlElement');
$this->highlight = new Highlight($this->start, $this->end, $this->type, $this->refStart, $this->refEnd, $this->infoText, $this->htmlElement);
$this->highlight->setLicenseId($this->licenseId);
}
private function addDiffsToHighlights($licenseId, $lineMatches, &$highlights)
{
foreach (explode(',', $lineMatches['diff']) as $diff) {
// t[0+4798] M0 s[0+4834]
if (preg_match('/t\\[(?P<start>[0-9]*)\\+?(?P<len>[0-9]*)?\\] M(?P<type>.?) s\\[(?P<rf_start>[0-9]*)\\+?(?P<rf_len>[0-9]*)?\\]/', $diff, $diffMatches)) {
$start = $diffMatches['start'];
$end = $start + $diffMatches['len'];
$rfStart = intval($diffMatches['rf_start']);
$rfEnd = $rfStart + $diffMatches['rf_len'];
switch ($diffMatches['type']) {
case '0':
$type = Highlight::MATCH;
break;
case 'R':
$type = Highlight::CHANGED;
break;
case '-':
$type = Highlight::DELETED;
break;
case '+':
$type = Highlight::ADDED;
break;
default:
throw new \Exception('unrecognized diff type');
}
$highlight = new Highlight($start, $end, $type, $rfStart, $rfEnd);
$highlight->setLicenseId($licenseId);
$highlights[] = $highlight;
} else {
throw new \Exception('failed parsing diff element: ' . $diff);
}
}
}
/**
* @param int $uploadTreeId
* @param int|null $clearingId
* @return Highlight[]
*/
public function getHighlightBulk($uploadTreeId, $clearingId = null)
{
$stmt = __METHOD__;
$sql = "SELECT h.clearing_event_fk, h.start, h.len, ce.rf_fk, rf_text\n FROM clearing_event ce\n INNER JOIN highlight_bulk h ON ce.clearing_event_pk = h.clearing_event_fk\n INNER JOIN license_ref_bulk lrb ON lrb.lrb_pk = h.lrb_fk\n WHERE ce.uploadtree_fk = \$1";
$params = array($uploadTreeId);
if (!empty($clearingId)) {
$stmt .= ".clearingId";
$params[] = $clearingId;
$sql .= " AND h.clearing_event_fk = \$" . count($params);
}
$this->dbManager->prepare($stmt, $sql);
$result = $this->dbManager->execute($stmt, $params);
$highlightEntries = array();
while ($row = $this->dbManager->fetchArray($result)) {
$newHighlight = new Highlight(intval($row['start']), intval($row['start'] + $row['len']), Highlight::BULK, 0, 0);
$newHighlight->setLicenseId($row['rf_fk']);
$highlightEntries[] = $newHighlight;
}
$this->dbManager->freeResult($result);
return $highlightEntries;
}
