/**
* Show the form for editing the specified resource.
*
* @param int $id
* @return Response
*/
public function edit($id)
{
$topupRequest = TopupRequest::find($id);
$commodities = Commodity::has('receipts')->lists('name', 'id');
$sections = TestCategory::all()->lists('name', 'id');
return View::make('topup.edit')->with('topupRequest', $topupRequest)->with('sections', $sections)->with('commodities', $commodities);
}
/**
* Contains the testing sample data for the TopUpController.
*
* @return void
*/
public function setVariables()
{
// Initial sample storage data
$this->input = array('lab_section' => TestCategory::find(1)->id, 'commodity' => Commodity::find(1)->id, 'order_quantity' => '1000', 'remarks' => 'More quantity required');
// Edition sample data
$this->inputUpdate = array('lab_section' => TestCategory::find(1)->id, 'commodity' => Commodity::find(1)->id, 'order_quantity' => '1000', 'remarks' => 'More quantity required');
}
function getCMSFields()
{
$fields = parent::getCMSFields();
$fields->addFieldsToTab('Root.Text', array(new ReadonlyField('Readonly', 'ReadonlyField'), new TextareaField('Textarea', 'TextareaField - 8 rows', 8), new TextField('Text', 'TextField'), new HtmlEditorField('HTMLField', 'HtmlEditorField'), new EmailField('Email', 'EmailField'), new PasswordField('Password', 'PasswordField'), new AjaxUniqueTextField('AjaxUniqueText', 'AjaxUniqueTextField', 'AjaxUniqueText', 'BasicFieldsTestPage')));
$fields->addFieldsToTab('Root.Numeric', array(new NumericField('Number', 'NumericField'), new CurrencyField('Price', 'CurrencyField'), new PhoneNumberField('PhoneNumber', 'PhoneNumberField'), new CreditCardField('CreditCard', 'CreditCardField')));
$fields->addFieldsToTab('Root.Option', array(new CheckboxField('Checkbox', 'CheckboxField'), new CheckboxSetField('CheckboxSet', 'CheckboxSetField', TestCategory::map()), new DropdownField('DropdownID', 'DropdownField', TestCategory::map()), new GroupedDropdownField('GroupedDropdownID', 'GroupedDropdown', array('Test Categorys' => TestCategory::map())), new ListboxField('ListboxFieldID', 'ListboxField', TestCategory::map(), array(), 3), new OptionsetField('OptionSetID', 'OptionSetField', TestCategory::map())));
// All these date/time fields generally have issues saving directly in the CMS
$fields->addFieldsToTab('Root.DateTime', array($calendarDateField = new DateField('CalendarDate', 'DateField with calendar'), new DateField('Date', 'DateField'), $dmyDateField = new DateField('DMYDate', 'DateField with separate fields'), new TimeField('Time', 'TimeField'), $timeFieldDropdown = new TimeField('TimeDropdown', 'TimeField with dropdown'), new DatetimeField('DateTime', 'DateTime'), $dateTimeShowCalendar = new DatetimeField('DateTimeWithCalendar', 'DateTime with calendar')));
$calendarDateField->setConfig('showcalendar', true);
$dmyDateField->setConfig('dmyfields', true);
$timeFieldDropdown->setConfig('showdropdown', true);
$dateTimeShowCalendar->getDateField()->setConfig('showcalendar', true);
$dateTimeShowCalendar->getTimeField()->setConfig('showdropdown', true);
$fields->addFieldsToTab('Root.File', array(UploadField::create('File', 'FileUploadField'), UploadField::create('Image', 'ImageUploadField'), UploadField::create('HasManyFiles', 'HasManyFilesUploadField'), UploadField::create('ManyManyFiles', 'ManyManyFilesUploadField')));
$tabs = array('Root.Text', 'Root.Numeric', 'Root.Option', 'Root.DateTime', 'Root.File');
foreach ($tabs as $tab) {
$tabObj = $fields->fieldByName($tab);
foreach ($tabObj->FieldList() as $field) {
$disabledField = $field->performDisabledTransformation();
$disabledField->setTitle($disabledField->Title() . ' (disabled)');
$disabledField->setName($disabledField->getName() . '_disabled');
$tabObj->insertAfter($disabledField, $field->getName());
$readonlyField = $field->performReadonlyTransformation();
$readonlyField->setTitle($readonlyField->Title() . ' (readonly)');
$readonlyField->setName($readonlyField->getName() . '_readonly');
$tabObj->insertAfter($readonlyField, $field->getName());
}
}
$fields->addFieldToTab('Root.Text', new TextField('Text_NoLabel', false, 'TextField without label'), 'Text_disabled');
return $fields;
}
public function testSlugGeneration()
{
$category = new TestCategory();
$category->setName('Test category');
$this->assertAttributeEmpty('slug', $category, 'the slug is empty during creation');
$category->generateSlug();
$this->assertAttributeEquals('test-category', 'slug', $category, '::generateSlug() generates the slug from the name');
$this->assertEquals('test-category', $category->getSlug(), '::getSlug() gets the slug');
$category->setName('Renamed category');
$category->generateSlug();
$this->assertAttributeEquals('test-category', 'slug', $category, '::generateSlug() does not replace an existing slug');
$category->setSlug('custom-slug');
$this->assertAttributeEquals('custom-slug', 'slug', $category, '::setSlug() sets the slug');
$category->setSlug('Malformed slug...');
$this->assertAttributeEquals('malformed-slug', 'slug', $category, 'the slug is always formatted');
}
/**
* Tests the update function in the TestCategoryController
* @param void
* @return void
*/
public function testDelete()
{
Input::replace($this->testCategoryData);
$testCategory = new TestCategoryController();
$testCategory->store();
$testCategorystored = TestCategory::orderBy('id', 'desc')->take(1)->get()->toArray();
$testCategory->delete($testCategorystored[0]['id']);
$testCategoriesDeleted = TestCategory::withTrashed()->find($testCategorystored[0]['id']);
$this->assertNotNull($testCategoriesDeleted->deleted_at);
}
function getCMSFields()
{
$fields = parent::getCMSFields();
$fields->addFieldToTab("Root.CheckboxSet", new CheckboxSetField("CheckboxSet", "CheckboxSetField", TestCategory::map()));
$fields->addFieldsToTab('Root.Tree', array(TreeDropdownField::create('HasOnePage', 'HasOnePage', 'SiteTree'), TreeMultiselectField::create('HasManyPages', 'HasManyPages', 'SiteTree'), TreeMultiselectField::create('ManyManyPages', 'ManyManyPages (with search)', 'SiteTree')->setShowSearch(true)));
// $fields->addFieldToTab("Root.Tests.ComplexTableField",
// new CheckboxSetField("CheckboxSet", "CheckboxSetField", TestCategory::map()));
// $fields->addFieldToTab("Root.Tests.CheckboxSet", new CheckboxSetField("CheckboxSet", "CheckboxSetField", TestCategory::map()));
return $fields;
}
/**
* Show the form for editing the specified resource.
*
* @param int $id
* @return Response
*/
public function edit($id)
{
//
$issue = Issue::find($id);
$commodities = Commodity::all()->lists('name', 'id');
$batches = Receipt::all()->lists('batch_no', 'id');
$users = User::where('id', '!=', Auth::user()->id)->lists('name', 'id');
$sections = TestCategory::all()->lists('name', 'id');
//To DO:create function for this
$available = $issue->topupRequest->commodity->available();
return View::make('issue.edit')->with('commodities', $commodities)->with('available', $available)->with('users', $users)->with('sections', $sections)->with('issue', $issue)->with('batches', $batches);
}
function getCMSFields()
{
$fields = parent::getCMSFields();
$description = 'This is <strong>bold</strong> help text';
$fields->addFieldsToTab('Root.Text', array(Object::create('TextField', 'Required', 'Required field'), Object::create('TextField', 'Validated', 'Validated field (checks range between 1 and 3)'), Object::create('ReadonlyField', 'Readonly', 'ReadonlyField'), Object::create('TextareaField', 'Textarea', 'TextareaField - 8 rows')->setRows(8), Object::create('TextField', 'Text', 'TextField'), Object::create('HtmlEditorField', 'HTMLField', 'HtmlEditorField'), Object::create('EmailField', 'Email', 'EmailField'), Object::create('PasswordField', 'Password', 'PasswordField')));
$fields->addFieldsToTab('Root.Numeric', array(Object::create('NumericField', 'Number', 'NumericField'), Object::create('CurrencyField', 'Price', 'CurrencyField'), Object::create('MoneyField', 'Money', 'MoneyField', array('Amount' => 99.98999999999999, 'Currency' => 'EUR')), Object::create('PhoneNumberField', 'PhoneNumber', 'PhoneNumberField'), Object::create('CreditCardField', 'CreditCard', 'CreditCardField')));
$fields->addFieldsToTab('Root.Option', array(Object::create('CheckboxField', 'Checkbox', 'CheckboxField'), Object::create('CheckboxSetField', 'CheckboxSet', 'CheckboxSetField', TestCategory::map()), Object::create('DropdownField', 'DropdownID', 'DropdownField', TestCategory::map())->setHasEmptyDefault(true), Object::create('GroupedDropdownField', 'GroupedDropdownID', 'GroupedDropdown', array('Test Categorys' => TestCategory::map())), Object::create('ListboxField', 'ListboxFieldID', 'ListboxField', TestCategory::map())->setSize(3), Object::create('ListboxField', 'MultipleListboxFieldID', 'ListboxField (multiple)', TestCategory::map())->setMultiple(true)->setSize(3), Object::create('OptionsetField', 'OptionSet', 'OptionSetField', TestCategory::map()), Object::create('ToggleCompositeField', 'ToggleCompositeField', 'ToggleCompositeField', new FieldList(Object::create('TextField', 'ToggleCompositeTextField1'), Object::create('TextField', 'ToggleCompositeTextField2'), Object::create('DropdownField', 'ToggleCompositeDropdownField', 'ToggleCompositeDropdownField', TestCategory::map()), Object::create('TextField', 'ToggleCompositeTextField3')))));
// All these date/time fields generally have issues saving directly in the CMS
$fields->addFieldsToTab('Root.DateTime', array($calendarDateField = Object::create('DateField', 'CalendarDate', 'DateField with calendar'), Object::create('DateField', 'Date', 'DateField'), $dmyDateField = Object::create('DateField', 'DMYDate', 'DateField with separate fields'), Object::create('TimeField', 'Time', 'TimeField'), $timeFieldDropdown = Object::create('TimeField', 'TimeWithDropdown', 'TimeField with dropdown'), Object::create('DatetimeField', 'DateTime', 'DateTime'), $dateTimeShowCalendar = Object::create('DatetimeField', 'DateTimeWithCalendar', 'DateTime with calendar')));
$calendarDateField->setConfig('showcalendar', true);
$dmyDateField->setConfig('dmyfields', true);
$timeFieldDropdown->setConfig('showdropdown', true);
$dateTimeShowCalendar->getDateField()->setConfig('showcalendar', true);
$dateTimeShowCalendar->getTimeField()->setConfig('showdropdown', true);
$fields->addFieldsToTab('Root.File', array($bla = UploadField::create('File', 'FileUploadField')->setDescription($description)->setConfig('allowedMaxFileNumber', 1)->setConfig('canPreviewFolder', false), UploadField::create('AttachedFile', 'UploadField with canUpload=false')->setDescription($description)->setConfig('canUpload', false), UploadField::create('Image', 'UploadField for image')->setDescription($description), UploadField::create('HasManyFiles', 'UploadField for has_many')->setDescription($description), UploadField::create('ManyManyFiles', 'UploadField for many_many')->setDescription($description)));
$data = $this->getDefaultData();
foreach ($fields->dataFields() as $field) {
$name = $field->getName();
if (isset($data[$name])) {
$field->setValue($data[$name]);
}
}
$blacklist = array('DMYDate', 'Required', 'Validated', 'ToggleCompositeField');
$tabs = array('Root.Text', 'Root.Numeric', 'Root.Option', 'Root.DateTime', 'Root.File');
foreach ($tabs as $tab) {
$tabObj = $fields->fieldByName($tab);
foreach ($tabObj->FieldList() as $field) {
$field->setDescription($description);
// ->addExtraClass('cms-description-tooltip');
if (in_array($field->getName(), $blacklist)) {
continue;
}
$disabledField = $field->performDisabledTransformation();
$disabledField->setTitle($disabledField->Title() . ' (disabled)');
$disabledField->setName($disabledField->getName() . '_disabled');
$tabObj->insertAfter($disabledField, $field->getName());
$readonlyField = $field->performReadonlyTransformation();
$readonlyField->setTitle($readonlyField->Title() . ' (readonly)');
$readonlyField->setName($readonlyField->getName() . '_readonly');
$tabObj->insertAfter($readonlyField, $field->getName());
}
}
$noLabelField = new TextField('Text_NoLabel', false, 'TextField without label');
$noLabelField->setDescription($description);
$fields->addFieldToTab('Root.Text', $noLabelField, 'Text_disabled');
$fields->addFieldToTab('Root.Text', FieldGroup::create(TextField::create('MyFieldGroup1'), TextField::create('MyFieldGroup2'), DropdownField::create('MyFieldGroup3', false, TestCategory::map())));
$fields->addFieldToTab('Root.Text', FieldGroup::create('MyLabelledFieldGroup', array(TextField::create('MyLabelledFieldGroup1'), TextField::create('MyLabelledFieldGroup2'), DropdownField::create('MyLabelledFieldGroup3', null, TestCategory::map())))->setTitle('My Labelled Field Group'));
return $fields;
}
function getCMSFields()
{
$fields = parent::getCMSFields();
$allFields = array();
$checkboxFields = array(new CheckboxSetField("CheckboxSet", "CheckboxSetField", TestCategory::map()));
$fields->addFieldsToTab("Root.CheckboxSet", $checkboxFields);
$allFields += $checkboxFields;
$treeFields = array(TreeDropdownField::create('HasOnePageID', 'HasOnePage', 'SiteTree'), TreeDropdownField::create('HasOnePageWithSearchID', 'HasOnePageWithSearch', 'SiteTree')->setShowSearch(true), TreeMultiselectField::create('HasManyPages', 'HasManyPages', 'SiteTree'), TreeMultiselectField::create('ManyManyPages', 'ManyManyPages (with search)', 'SiteTree')->setShowSearch(true));
$fields->addFieldsToTab('Root.Tree', $treeFields);
$allFields += $treeFields;
foreach ($allFields as $field) {
$field->setDescription('This is <strong>bold</strong> help text')->addExtraClass('cms-help');
// ->addExtraClass('cms-help cms-help-tooltip');
}
return $fields;
}
public function run()
{
/* Users table */
$usersData = array(array("username" => "administrator", "password" => Hash::make("password"), "email" => "*****@*****.**", "name" => "kBLIS Administrator", "designation" => "Programmer"), array("username" => "external", "password" => Hash::make("password"), "email" => "*****@*****.**", "name" => "External System User", "designation" => "Administrator", "image" => "/i/users/user-2.jpg"), array("username" => "lmorena", "password" => Hash::make("password"), "email" => "*****@*****.**", "name" => "L. Morena", "designation" => "Lab Technologist", "image" => "/i/users/user-3.png"), array("username" => "abumeyang", "password" => Hash::make("password"), "email" => "*****@*****.**", "name" => "A. Abumeyang", "designation" => "Doctor"));
foreach ($usersData as $user) {
$users[] = User::create($user);
}
$this->command->info('users seeded');
/* Specimen Types table */
$specTypesData = array(array("name" => "Ascitic Tap"), array("name" => "Aspirate"), array("name" => "CSF"), array("name" => "Dried Blood Spot"), array("name" => "High Vaginal Swab"), array("name" => "Nasal Swab"), array("name" => "Plasma"), array("name" => "Plasma EDTA"), array("name" => "Pleural Tap"), array("name" => "Pus Swab"), array("name" => "Rectal Swab"), array("name" => "S***n"), array("name" => "Serum"), array("name" => "Skin"), array("name" => "Sputum"), array("name" => "Stool"), array("name" => "Synovial Fluid"), array("name" => "Throat Swab"), array("name" => "Urethral Smear"), array("name" => "Urine"), array("name" => "Vaginal Smear"), array("name" => "Water"), array("name" => "Whole Blood"));
foreach ($specTypesData as $specimenType) {
$specTypes[] = SpecimenType::create($specimenType);
}
$this->command->info('specimen_types seeded');
/* Test Categories table - These map on to the lab sections */
$test_categories = TestCategory::create(array("name" => "PARASITOLOGY", "description" => ""));
$lab_section_microbiology = TestCategory::create(array("name" => "MICROBIOLOGY", "description" => ""));
$this->command->info('test_categories seeded');
/* Measure Types */
$measureTypes = array(array("id" => "1", "name" => "Numeric Range"), array("id" => "2", "name" => "Alphanumeric Values"), array("id" => "3", "name" => "Autocomplete"), array("id" => "4", "name" => "Free Text"));
foreach ($measureTypes as $measureType) {
MeasureType::create($measureType);
}
$this->command->info('measure_types seeded');
/* Measures table */
$measureBSforMPS = Measure::create(array("measure_type_id" => "2", "name" => "BS for mps", "unit" => ""));
$measure1 = Measure::create(array("measure_type_id" => "2", "name" => "Grams stain", "unit" => ""));
$measure2 = Measure::create(array("measure_type_id" => "2", "name" => "SERUM AMYLASE", "unit" => ""));
$measure3 = Measure::create(array("measure_type_id" => "2", "name" => "calcium", "unit" => ""));
$measure4 = Measure::create(array("measure_type_id" => "2", "name" => "SGOT", "unit" => ""));
$measure5 = Measure::create(array("measure_type_id" => "2", "name" => "Indirect COOMBS test", "unit" => ""));
$measure6 = Measure::create(array("measure_type_id" => "2", "name" => "Direct COOMBS test", "unit" => ""));
$measure7 = Measure::create(array("measure_type_id" => "2", "name" => "Du test", "unit" => ""));
MeasureRange::create(array("measure_id" => $measureBSforMPS->id, "alphanumeric" => "No mps seen", "interpretation" => "Negative"));
MeasureRange::create(array("measure_id" => $measureBSforMPS->id, "alphanumeric" => "+", "interpretation" => "Positive"));
MeasureRange::create(array("measure_id" => $measureBSforMPS->id, "alphanumeric" => "++", "interpretation" => "Positive"));
MeasureRange::create(array("measure_id" => $measureBSforMPS->id, "alphanumeric" => "+++", "interpretation" => "Positive"));
MeasureRange::create(array("measure_id" => $measure1->id, "alphanumeric" => "Negative"));
MeasureRange::create(array("measure_id" => $measure1->id, "alphanumeric" => "Positive"));
MeasureRange::create(array("measure_id" => $measure2->id, "alphanumeric" => "Low"));
MeasureRange::create(array("measure_id" => $measure2->id, "alphanumeric" => "High"));
MeasureRange::create(array("measure_id" => $measure2->id, "alphanumeric" => "Normal"));
MeasureRange::create(array("measure_id" => $measure3->id, "alphanumeric" => "High"));
MeasureRange::create(array("measure_id" => $measure3->id, "alphanumeric" => "Low"));
MeasureRange::create(array("measure_id" => $measure3->id, "alphanumeric" => "Normal"));
MeasureRange::create(array("measure_id" => $measure4->id, "alphanumeric" => "High"));
MeasureRange::create(array("measure_id" => $measure4->id, "alphanumeric" => "Low"));
MeasureRange::create(array("measure_id" => $measure4->id, "alphanumeric" => "Normal"));
MeasureRange::create(array("measure_id" => $measure5->id, "alphanumeric" => "Positive"));
MeasureRange::create(array("measure_id" => $measure5->id, "alphanumeric" => "Negative"));
MeasureRange::create(array("measure_id" => $measure6->id, "alphanumeric" => "Positive"));
MeasureRange::create(array("measure_id" => $measure6->id, "alphanumeric" => "Negative"));
MeasureRange::create(array("measure_id" => $measure7->id, "alphanumeric" => "Positive"));
MeasureRange::create(array("measure_id" => $measure7->id, "alphanumeric" => "Negative"));
$measures = array(array("measure_type_id" => "1", "name" => "URIC ACID", "unit" => "mg/dl"), array("measure_type_id" => "4", "name" => "CSF for biochemistry", "unit" => ""), array("measure_type_id" => "4", "name" => "PSA", "unit" => ""), array("measure_type_id" => "1", "name" => "Total", "unit" => "mg/dl"), array("measure_type_id" => "1", "name" => "Alkaline Phosphate", "unit" => "u/l"), array("measure_type_id" => "1", "name" => "Direct", "unit" => "mg/dl"), array("measure_type_id" => "1", "name" => "Total Proteins", "unit" => ""), array("measure_type_id" => "4", "name" => "LFTS", "unit" => "NULL"), array("measure_type_id" => "1", "name" => "Chloride", "unit" => "mmol/l"), array("measure_type_id" => "1", "name" => "Potassium", "unit" => "mmol/l"), array("measure_type_id" => "1", "name" => "Sodium", "unit" => "mmol/l"), array("measure_type_id" => "4", "name" => "Electrolytes", "unit" => ""), array("measure_type_id" => "1", "name" => "Creatinine", "unit" => "mg/dl"), array("measure_type_id" => "1", "name" => "Urea", "unit" => "mg/dl"), array("measure_type_id" => "4", "name" => "RFTS", "unit" => ""), array("measure_type_id" => "4", "name" => "TFT", "unit" => ""));
foreach ($measures as $measure) {
Measure::create($measure);
}
$measureGXM = Measure::create(array("measure_type_id" => "4", "name" => "GXM", "unit" => ""));
$measureBG = Measure::create(array("measure_type_id" => "2", "name" => "Blood Grouping", "unit" => ""));
MeasureRange::create(array("measure_id" => $measureBG->id, "alphanumeric" => "O-"));
MeasureRange::create(array("measure_id" => $measureBG->id, "alphanumeric" => "O+"));
MeasureRange::create(array("measure_id" => $measureBG->id, "alphanumeric" => "A-"));
MeasureRange::create(array("measure_id" => $measureBG->id, "alphanumeric" => "A+"));
MeasureRange::create(array("measure_id" => $measureBG->id, "alphanumeric" => "B-"));
MeasureRange::create(array("measure_id" => $measureBG->id, "alphanumeric" => "B+"));
MeasureRange::create(array("measure_id" => $measureBG->id, "alphanumeric" => "AB-"));
MeasureRange::create(array("measure_id" => $measureBG->id, "alphanumeric" => "AB+"));
$measureHB = Measure::create(array("measure_type_id" => Measure::NUMERIC, "name" => "HB", "unit" => "g/dL"));
$measuresUrinalysisData = array(array("measure_type_id" => "4", "name" => "Urine microscopy", "unit" => ""), array("measure_type_id" => "4", "name" => "Pus cells", "unit" => ""), array("measure_type_id" => "4", "name" => "S. haematobium", "unit" => ""), array("measure_type_id" => "4", "name" => "T. vaginalis", "unit" => ""), array("measure_type_id" => "4", "name" => "Yeast cells", "unit" => ""), array("measure_type_id" => "4", "name" => "Red blood cells", "unit" => ""), array("measure_type_id" => "4", "name" => "Bacteria", "unit" => ""), array("measure_type_id" => "4", "name" => "Spermatozoa", "unit" => ""), array("measure_type_id" => "4", "name" => "Epithelial cells", "unit" => ""), array("measure_type_id" => "4", "name" => "ph", "unit" => ""), array("measure_type_id" => "4", "name" => "Urine chemistry", "unit" => ""), array("measure_type_id" => "4", "name" => "Glucose", "unit" => ""), array("measure_type_id" => "4", "name" => "Ketones", "unit" => ""), array("measure_type_id" => "4", "name" => "Proteins", "unit" => ""), array("measure_type_id" => "4", "name" => "Blood", "unit" => ""), array("measure_type_id" => "4", "name" => "Bilirubin", "unit" => ""), array("measure_type_id" => "4", "name" => "Urobilinogen Phenlpyruvic acid", "unit" => ""), array("measure_type_id" => "4", "name" => "pH", "unit" => ""));
foreach ($measuresUrinalysisData as $measureU) {
$measuresUrinalysis[] = Measure::create($measureU);
}
$measuresWBCData = array(array("measure_type_id" => Measure::NUMERIC, "name" => "WBC", "unit" => "x10³/µL"), array("measure_type_id" => Measure::NUMERIC, "name" => "Lym", "unit" => "L"), array("measure_type_id" => Measure::NUMERIC, "name" => "Mon", "unit" => "*"), array("measure_type_id" => Measure::NUMERIC, "name" => "Neu", "unit" => "*"), array("measure_type_id" => Measure::NUMERIC, "name" => "Eos", "unit" => ""), array("measure_type_id" => Measure::NUMERIC, "name" => "Baso", "unit" => ""));
foreach ($measuresWBCData as $value) {
$measuresWBC[] = Measure::create($value);
}
$measureRangesWBC = array(array("measure_id" => $measuresWBC[0]->id, "age_min" => 0, "age_max" => 100, "gender" => MeasureRange::BOTH, "range_lower" => 4, "range_upper" => 11), array("measure_id" => $measuresWBC[1]->id, "age_min" => 0, "age_max" => 100, "gender" => MeasureRange::BOTH, "range_lower" => 1.5, "range_upper" => 4), array("measure_id" => $measuresWBC[2]->id, "age_min" => 0, "age_max" => 100, "gender" => MeasureRange::BOTH, "range_lower" => 0.1, "range_upper" => 9), array("measure_id" => $measuresWBC[3]->id, "age_min" => 0, "age_max" => 100, "gender" => MeasureRange::BOTH, "range_lower" => 2.5, "range_upper" => 7), array("measure_id" => $measuresWBC[4]->id, "age_min" => 0, "age_max" => 100, "gender" => MeasureRange::BOTH, "range_lower" => 0, "range_upper" => 6), array("measure_id" => $measuresWBC[5]->id, "age_min" => 0, "age_max" => 100, "gender" => MeasureRange::BOTH, "range_lower" => 0, "range_upper" => 2));
foreach ($measureRangesWBC as $value) {
MeasureRange::create($value);
}
$this->command->info('measures seeded');
/* Test Types table */
$testTypeBS = TestType::create(array("name" => "BS for mps", "test_category_id" => $test_categories->id, "orderable_test" => 1));
$testTypeStoolCS = TestType::create(array("name" => "Stool for C/S", "test_category_id" => $lab_section_microbiology->id));
$testTypeGXM = TestType::create(array("name" => "GXM", "test_category_id" => $test_categories->id));
$testTypeHB = TestType::create(array("name" => "HB", "test_category_id" => $test_categories->id, "orderable_test" => 1));
$testTypeUrinalysis = TestType::create(array("name" => "Urinalysis", "test_category_id" => $test_categories->id));
$testTypeWBC = TestType::create(array("name" => "WBC", "test_category_id" => $test_categories->id));
$this->command->info('test_types seeded');
/* TestType Measure table */
TestTypeMeasure::create(array("test_type_id" => $testTypeBS->id, "measure_id" => $measureBSforMPS->id));
TestTypeMeasure::create(array("test_type_id" => $testTypeGXM->id, "measure_id" => $measureGXM->id));
TestTypeMeasure::create(array("test_type_id" => $testTypeGXM->id, "measure_id" => $measureBG->id));
TestTypeMeasure::create(array("test_type_id" => $testTypeHB->id, "measure_id" => $measureHB->id));
foreach ($measuresUrinalysis as $value) {
TestTypeMeasure::create(array("test_type_id" => $testTypeUrinalysis->id, "measure_id" => $value->id));
}
foreach ($measuresWBC as $value) {
TestTypeMeasure::create(array("test_type_id" => $testTypeWBC->id, "measure_id" => $value->id));
}
$this->command->info('testtype_measures seeded');
/* testtype_specimentypes table */
DB::table('testtype_specimentypes')->insert(array("test_type_id" => $testTypeBS->id, "specimen_type_id" => $specTypes[count($specTypes) - 1]->id));
DB::table('testtype_specimentypes')->insert(array("test_type_id" => $testTypeGXM->id, "specimen_type_id" => $specTypes[count($specTypes) - 1]->id));
DB::table('testtype_specimentypes')->insert(array("test_type_id" => $testTypeHB->id, "specimen_type_id" => $specTypes[count($specTypes) - 1]->id));
DB::table('testtype_specimentypes')->insert(array("test_type_id" => $testTypeHB->id, "specimen_type_id" => $specTypes[6]->id));
DB::table('testtype_specimentypes')->insert(array("test_type_id" => $testTypeHB->id, "specimen_type_id" => $specTypes[7]->id));
DB::table('testtype_specimentypes')->insert(array("test_type_id" => $testTypeHB->id, "specimen_type_id" => $specTypes[12]->id));
DB::table('testtype_specimentypes')->insert(array("test_type_id" => $testTypeUrinalysis->id, "specimen_type_id" => $specTypes[19]->id));
DB::table('testtype_specimentypes')->insert(array("test_type_id" => $testTypeUrinalysis->id, "specimen_type_id" => $specTypes[20]->id));
DB::table('testtype_specimentypes')->insert(array("test_type_id" => $testTypeWBC->id, "specimen_type_id" => $specTypes[count($specTypes) - 1]->id));
$this->command->info('testtype_specimentypes seeded');
/* Patients table */
$patients_array = array(array("name" => "Jam Felicia", "email" => "*****@*****.**", "patient_number" => "1002", "dob" => "2000-01-01", "gender" => "1", "created_by" => "2"), array("name" => "Emma Wallace", "email" => "*****@*****.**", "patient_number" => "1003", "dob" => "1990-03-01", "gender" => "1", "created_by" => "2"), array("name" => "Jack Tee", "email" => "*****@*****.**", "patient_number" => "1004", "dob" => "1999-12-18", "gender" => "0", "created_by" => "1"), array("name" => "Hu Jintao", "email" => "*****@*****.**", "patient_number" => "1005", "dob" => "1956-10-28", "gender" => "0", "created_by" => "2"), array("name" => "Lance Opiyo", "email" => "*****@*****.**", "patient_number" => "2150", "dob" => "2012-01-01", "gender" => "0", "created_by" => "1"));
foreach ($patients_array as $pat) {
$patients[] = Patient::create($pat);
}
$this->command->info('patients seeded');
/* Test Phase table */
$test_phases = array(array("id" => "1", "name" => "Pre-Analytical"), array("id" => "2", "name" => "Analytical"), array("id" => "3", "name" => "Post-Analytical"));
foreach ($test_phases as $test_phase) {
TestPhase::create($test_phase);
}
$this->command->info('test_phases seeded');
/* Test Status table */
$test_statuses = array(array("id" => "1", "name" => "not-received", "test_phase_id" => "1"), array("id" => "2", "name" => "pending", "test_phase_id" => "1"), array("id" => "3", "name" => "started", "test_phase_id" => "2"), array("id" => "4", "name" => "completed", "test_phase_id" => "3"), array("id" => "5", "name" => "verified", "test_phase_id" => "3"));
foreach ($test_statuses as $test_status) {
TestStatus::create($test_status);
}
$this->command->info('test_statuses seeded');
/* Specimen Status table */
$specimen_statuses = array(array("id" => "1", "name" => "specimen-not-collected"), array("id" => "2", "name" => "specimen-accepted"), array("id" => "3", "name" => "specimen-rejected"));
foreach ($specimen_statuses as $specimen_status) {
SpecimenStatus::create($specimen_status);
}
$this->command->info('specimen_statuses seeded');
/* Visits table */
for ($i = 0; $i < 7; $i++) {
$visits[] = Visit::create(array("patient_id" => $patients[rand(0, count($patients) - 1)]->id));
}
$this->command->info('visits seeded');
/* Rejection Reasons table */
$rejection_reasons_array = array(array("reason" => "Poorly labelled"), array("reason" => "Over saturation"), array("reason" => "Insufficient Sample"), array("reason" => "Scattered"), array("reason" => "Clotted Blood"), array("reason" => "Two layered spots"), array("reason" => "Serum rings"), array("reason" => "Scratched"), array("reason" => "Haemolysis"), array("reason" => "Spots that cannot elute"), array("reason" => "Leaking"), array("reason" => "Broken Sample Container"), array("reason" => "Mismatched sample and form labelling"), array("reason" => "Missing Labels on container and tracking form"), array("reason" => "Empty Container"), array("reason" => "Samples without tracking forms"), array("reason" => "Poor transport"), array("reason" => "Lipaemic"), array("reason" => "Wrong container/Anticoagulant"), array("reason" => "Request form without samples"), array("reason" => "Missing collection date on specimen / request form."), array("reason" => "Name and signature of requester missing"), array("reason" => "Mismatched information on request form and specimen container."), array("reason" => "Request form contaminated with specimen"), array("reason" => "Duplicate specimen received"), array("reason" => "Delay between specimen collection and arrival in the laboratory"), array("reason" => "Inappropriate specimen packing"), array("reason" => "Inappropriate specimen for the test"), array("reason" => "Inappropriate test for the clinical condition"), array("reason" => "No Label"), array("reason" => "Leaking"), array("reason" => "No Sample in the Container"), array("reason" => "No Request Form"), array("reason" => "Missing Information Required"));
foreach ($rejection_reasons_array as $rejection_reason) {
$rejection_reasons[] = RejectionReason::create($rejection_reason);
}
$this->command->info('rejection_reasons seeded');
/* Specimen table */
$this->command->info('specimens seeded');
$now = new DateTime();
/* Test table */
Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeBS->id, "specimen_id" => $this->createSpecimen(Test::NOT_RECEIVED, Specimen::NOT_COLLECTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id), "test_status_id" => Test::NOT_RECEIVED, "requested_by" => "Dr. Abou Meyang", "created_by" => $users[rand(0, count($users) - 1)]->id));
Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeHB->id, "specimen_id" => $this->createSpecimen(Test::PENDING, Specimen::NOT_COLLECTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id), "test_status_id" => Test::PENDING, "requested_by" => "Dr. Abou Meyang", "created_by" => $users[rand(0, count($users) - 1)]->id));
Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeGXM->id, "specimen_id" => $this->createSpecimen(Test::PENDING, Specimen::NOT_COLLECTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id), "test_status_id" => Test::PENDING, "requested_by" => "Dr. Abou Meyang", "created_by" => $users[rand(0, count($users) - 1)]->id));
Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeBS->id, "specimen_id" => $this->createSpecimen(Test::PENDING, Specimen::ACCEPTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id), "test_status_id" => Test::PENDING, "created_by" => $users[rand(0, count($users) - 1)]->id, "requested_by" => "Dr. Abou Meyang"));
$test_gxm_accepted_completed = Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeGXM->id, "specimen_id" => $this->createSpecimen(Test::COMPLETED, Specimen::ACCEPTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id), "interpretation" => "Perfect match.", "test_status_id" => Test::COMPLETED, "created_by" => $users[rand(0, count($users) - 1)]->id, "tested_by" => $users[rand(0, count($users) - 1)]->id, "requested_by" => "Dr. Abou Meyang", "time_started" => $now->format('Y-m-d H:i:s'), "time_completed" => $now->add(new DateInterval('PT12M8S'))->format('Y-m-d H:i:s')));
$test_hb_accepted_completed = Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeHB->id, "specimen_id" => $this->createSpecimen(Test::COMPLETED, Specimen::ACCEPTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id), "interpretation" => "Do nothing!", "test_status_id" => Test::COMPLETED, "created_by" => $users[rand(0, count($users) - 1)]->id, "tested_by" => $users[rand(0, count($users) - 1)]->id, "requested_by" => "Genghiz Khan", "time_started" => $now->format('Y-m-d H:i:s'), "time_completed" => $now->add(new DateInterval('PT5M23S'))->format('Y-m-d H:i:s')));
$tests_accepted_started = Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeGXM->id, "specimen_id" => $this->createSpecimen(Test::STARTED, Specimen::ACCEPTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id), "test_status_id" => Test::STARTED, "requested_by" => "Dr. Abou Meyang", "created_by" => $users[rand(0, count($users) - 1)]->id, "time_started" => $now->format('Y-m-d H:i:s')));
$tests_accepted_completed = Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeBS->id, "specimen_id" => $this->createSpecimen(Test::COMPLETED, Specimen::ACCEPTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id), "interpretation" => "Positive", "test_status_id" => Test::COMPLETED, "created_by" => $users[rand(0, count($users) - 1)]->id, "tested_by" => $users[rand(0, count($users) - 1)]->id, "requested_by" => "Ariel Smith", "time_started" => $now->format('Y-m-d H:i:s'), "time_completed" => $now->add(new DateInterval('PT7M34S'))->format('Y-m-d H:i:s')));
$tests_accepted_verified = Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeBS->id, "specimen_id" => $this->createSpecimen(Test::VERIFIED, Specimen::ACCEPTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id), "interpretation" => "Very high concentration of parasites.", "test_status_id" => Test::VERIFIED, "created_by" => $users[rand(0, count($users) - 1)]->id, "tested_by" => $users[rand(0, count($users) - 1)]->id, "verified_by" => $users[rand(0, count($users) - 1)]->id, "requested_by" => "Genghiz Khan", "time_started" => $now, "time_completed" => $now->add(new DateInterval('PT5M17S'))->format('Y-m-d H:i:s'), "time_verified" => $now->add(new DateInterval('PT112M33S'))->format('Y-m-d H:i:s')));
$tests_rejected_pending = Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeBS->id, "specimen_id" => $this->createSpecimen(Test::PENDING, Specimen::REJECTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id, $users[rand(0, count($users) - 1)]->id, $rejection_reasons[rand(0, count($rejection_reasons) - 1)]->id), "test_status_id" => Test::PENDING, "requested_by" => "Dr. Abou Meyang", "created_by" => $users[rand(0, count($users) - 1)]->id, "time_started" => $now->format('Y-m-d H:i:s')));
// WBC Started
Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeWBC->id, "specimen_id" => $this->createSpecimen(Test::STARTED, Specimen::ACCEPTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id), "test_status_id" => Test::PENDING, "requested_by" => "Fred Astaire", "created_by" => $users[rand(0, count($users) - 1)]->id));
$tests_rejected_started = Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeBS->id, "specimen_id" => $this->createSpecimen(Test::STARTED, Specimen::REJECTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id, $users[rand(0, count($users) - 1)]->id, $rejection_reasons[rand(0, count($rejection_reasons) - 1)]->id), "test_status_id" => Test::STARTED, "created_by" => $users[rand(0, count($users) - 1)]->id, "requested_by" => "Bony Em", "time_started" => $now->format('Y-m-d H:i:s')));
$tests_rejected_completed = Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeBS->id, "specimen_id" => $this->createSpecimen(Test::COMPLETED, Specimen::REJECTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id, $users[rand(0, count($users) - 1)]->id, $rejection_reasons[rand(0, count($rejection_reasons) - 1)]->id), "interpretation" => "Budda Boss", "test_status_id" => Test::COMPLETED, "created_by" => $users[rand(0, count($users) - 1)]->id, "tested_by" => $users[rand(0, count($users) - 1)]->id, "requested_by" => "Ed Buttler", "time_started" => $now->format('Y-m-d H:i:s'), "time_completed" => $now->add(new DateInterval('PT30M4S'))->format('Y-m-d H:i:s')));
Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeUrinalysis->id, "specimen_id" => $this->createSpecimen(Test::PENDING, Specimen::NOT_COLLECTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id), "test_status_id" => Test::PENDING, "requested_by" => "Dr. Abou Meyang", "created_by" => $users[rand(0, count($users) - 1)]->id));
Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeWBC->id, "specimen_id" => $this->createSpecimen(Test::PENDING, Specimen::NOT_COLLECTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id), "test_status_id" => Test::PENDING, "requested_by" => "Dr. Abou Meyang", "created_by" => $users[rand(0, count($users) - 1)]->id));
$test_urinalysis_accepted_completed = Test::create(array("visit_id" => $visits[rand(0, count($visits) - 1)]->id, "test_type_id" => $testTypeUrinalysis->id, "specimen_id" => $this->createSpecimen(Test::COMPLETED, Specimen::ACCEPTED, SpecimenType::all()->last()->id, $users[rand(0, count($users) - 1)]->id), "interpretation" => "Whats this !!!! ###%%% ^ *() /", "test_status_id" => Test::COMPLETED, "created_by" => $users[rand(0, count($users) - 1)]->id, "tested_by" => $users[rand(0, count($users) - 1)]->id, "requested_by" => "Dr. Abou Meyang", "time_started" => $now->format('Y-m-d H:i:s'), "time_completed" => $now->add(new DateInterval('PT12M8S'))->format('Y-m-d H:i:s'), "external_id" => 596699));
$this->command->info('tests seeded');
/* Test Results table */
$testResults = array(array("test_id" => $tests_accepted_verified->id, "measure_id" => $measureBSforMPS->id, "result" => "+++"), array("test_id" => $tests_accepted_completed->id, "measure_id" => $measureBSforMPS->id, "result" => "++"), array("test_id" => $test_gxm_accepted_completed->id, "measure_id" => $measureGXM->id, "result" => "COMPATIBLE WITH 061832914 B/G A POS.EXPIRY19/8/14"), array("test_id" => $test_gxm_accepted_completed->id, "measure_id" => $measureBG->id, "result" => "A+"), array("test_id" => $test_hb_accepted_completed->id, "measure_id" => $measureHB->id, "result" => "13.7"), array("test_id" => $tests_rejected_completed->id, "measure_id" => $measureBSforMPS->id, "result" => "No mps seen"));
foreach ($measuresUrinalysis as $key => $measure) {
$testResults[] = array("test_id" => $test_urinalysis_accepted_completed->id, "measure_id" => $measure->id, "result" => $key . "50");
}
foreach ($testResults as $testResult) {
TestResult::create($testResult);
}
$this->command->info('test results seeded');
/* Permissions table */
$permissions = array(array("name" => "view_names", "display_name" => "Can view patient names"), array("name" => "manage_patients", "display_name" => "Can add patients"), array("name" => "receive_external_test", "display_name" => "Can receive test requests"), array("name" => "request_test", "display_name" => "Can request new test"), array("name" => "accept_test_specimen", "display_name" => "Can accept test specimen"), array("name" => "reject_test_specimen", "display_name" => "Can reject test specimen"), array("name" => "change_test_specimen", "display_name" => "Can change test specimen"), array("name" => "start_test", "display_name" => "Can start tests"), array("name" => "enter_test_results", "display_name" => "Can enter tests results"), array("name" => "edit_test_results", "display_name" => "Can edit test results"), array("name" => "verify_test_results", "display_name" => "Can verify test results"), array("name" => "send_results_to_external_system", "display_name" => "Can send test results to external systems"), array("name" => "refer_specimens", "display_name" => "Can refer specimens"), array("name" => "manage_users", "display_name" => "Can manage users"), array("name" => "manage_test_catalog", "display_name" => "Can manage test catalog"), array("name" => "manage_lab_configurations", "display_name" => "Can manage lab configurations"), array("name" => "view_reports", "display_name" => "Can view reports"), array("name" => "manage_inventory", "display_name" => "Can manage inventory"), array("name" => "request_topup", "display_name" => "Can request top-up"), array("name" => "manage_qc", "display_name" => "Can manage Quality Control"));
foreach ($permissions as $permission) {
Permission::create($permission);
}
$this->command->info('Permissions table seeded');
/* Roles table */
$roles = array(array("name" => "Superadmin"), array("name" => "Technologist"), array("name" => "Receptionist"));
foreach ($roles as $role) {
Role::create($role);
}
$this->command->info('Roles table seeded');
$user1 = User::find(1);
$role1 = Role::find(1);
$permissions = Permission::all();
//Assign all permissions to role administrator
foreach ($permissions as $permission) {
$role1->attachPermission($permission);
}
//Assign role Administrator to user 1 administrator
$user1->attachRole($role1);
/* Instruments table */
$instrumentsData = array("name" => "Celltac F Mek 8222", "description" => "Automatic analyzer with 22 parameters and WBC 5 part diff Hematology Analyzer", "driver_name" => "KBLIS\\Plugins\\CelltacFMachine", "ip" => "192.168.1.12", "hostname" => "HEMASERVER");
$instrument = Instrument::create($instrumentsData);
$instrument->testTypes()->attach(array($testTypeWBC->id));
$this->command->info('Instruments table seeded');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596699,"parentLabNo":0,"requestingClinician":"frankenstein Dr",
"investigation":"Urinalysis","requestDate":"2014-10-14 10:20:35","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596700,"parentLabNo":596699,"requestingClinician":"frankenstein Dr",
"investigation":"Urine microscopy","requestDate":"2014-10-14 10:20:35","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596701,"parentLabNo":596700,"requestingClinician":"frankenstein Dr",
"investigation":"Pus cells","requestDate":"2014-10-14 10:20:35","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596702,"parentLabNo":596700,"requestingClinician":"frankenstein Dr",
"investigation":"S. haematobium","requestDate":"2014-10-14 10:20:35","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596703,"parentLabNo":596700,"requestingClinician":"frankenstein Dr",
"investigation":"T. vaginalis","requestDate":"2014-10-14 10:20:35","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596704,"parentLabNo":596700,"requestingClinician":"frankenstein Dr",
"investigation":"Yeast cells","requestDate":"2014-10-14 10:20:35","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596705,"parentLabNo":596700,"requestingClinician":"frankenstein Dr",
"investigation":"Red blood cells","requestDate":"2014-10-14 10:20:35","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596706,"parentLabNo":596700,"requestingClinician":"frankenstein Dr",
"investigation":"Bacteria","requestDate":"2014-10-14 10:20:36","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596707,"parentLabNo":596700,"requestingClinician":"frankenstein Dr",
"investigation":"Spermatozoa","requestDate":"2014-10-14 10:20:36","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596708,"parentLabNo":596700,"requestingClinician":"frankenstein Dr",
"investigation":"Epithelial cells","requestDate":"2014-10-14 10:20:36","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596709,"parentLabNo":596700,"requestingClinician":"frankenstein Dr",
"investigation":"ph","requestDate":"2014-10-14 10:20:36","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596710,"parentLabNo":596699,"requestingClinician":"frankenstein Dr",
"investigation":"Urine chemistry","requestDate":"2014-10-14 10:20:36","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596711,"parentLabNo":596710,"requestingClinician":"frankenstein Dr",
"investigation":"Glucose","requestDate":"2014-10-14 10:20:36","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596712,"parentLabNo":596710,"requestingClinician":"frankenstein Dr",
"investigation":"Ketones","requestDate":"2014-10-14 10:20:36","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596713,"parentLabNo":596710,"requestingClinician":"frankenstein Dr",
"investigation":"Proteins","requestDate":"2014-10-14 10:20:36","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596714,"parentLabNo":596710,"requestingClinician":"frankenstein Dr",
"investigation":"Blood","requestDate":"2014-10-14 10:20:36","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596715,"parentLabNo":596710,"requestingClinician":"frankenstein Dr",
"investigation":"Bilirubin","requestDate":"2014-10-14 10:20:36","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596716,"parentLabNo":596710,"requestingClinician":"frankenstein Dr",
"investigation":"Urobilinogen Phenlpyruvic acid","requestDate":"2014-10-14 10:20:37","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
$labRequestUrinalysis[] = json_decode('{"cost":null,"receiptNumber":null,"receiptType":null,"labNo":596717,"parentLabNo":596710,"requestingClinician":"frankenstein Dr",
"investigation":"pH","requestDate":"2014-10-14 10:20:37","orderStage":"ip","patientVisitNumber":643660,"patient":{"id":326983,
"fullName":"Macau Macau","dateOfBirth":"1996-10-09 00:00:00","gender":"Female"},"address":{"address":null,"postalCode":null,"phoneNumber":"","city":null}}');
for ($i = 0; $i < count($labRequestUrinalysis); $i++) {
$dumper = new ExternalDump();
$dumper->lab_no = $labRequestUrinalysis[$i]->labNo;
$dumper->parent_lab_no = $labRequestUrinalysis[$i]->parentLabNo;
$dumper->test_id = $i == 0 ? $test_urinalysis_accepted_completed->id : null;
$dumper->requesting_clinician = $labRequestUrinalysis[$i]->requestingClinician;
$dumper->investigation = $labRequestUrinalysis[$i]->investigation;
$dumper->provisional_diagnosis = '';
$dumper->request_date = $labRequestUrinalysis[$i]->requestDate;
$dumper->order_stage = $labRequestUrinalysis[$i]->orderStage;
$dumper->patient_visit_number = $labRequestUrinalysis[$i]->patientVisitNumber;
$dumper->patient_id = $labRequestUrinalysis[$i]->patient->id;
$dumper->full_name = $labRequestUrinalysis[$i]->patient->fullName;
$dumper->dob = $labRequestUrinalysis[$i]->patient->dateOfBirth;
$dumper->gender = $labRequestUrinalysis[$i]->patient->gender;
$dumper->address = $labRequestUrinalysis[$i]->address->address;
$dumper->postal_code = '';
$dumper->phone_number = $labRequestUrinalysis[$i]->address->phoneNumber;
$dumper->city = $labRequestUrinalysis[$i]->address->city;
$dumper->cost = $labRequestUrinalysis[$i]->cost;
$dumper->receipt_number = $labRequestUrinalysis[$i]->receiptNumber;
$dumper->receipt_type = $labRequestUrinalysis[$i]->receiptType;
$dumper->waiver_no = '';
$dumper->system_id = "sanitas";
$dumper->save();
}
$this->command->info('ExternalDump table seeded');
// Begin seed for prevalence rates report
/* Test Categories table - These map on to the lab sections */
$lab_section_hematology = TestCategory::create(array("name" => "HEMATOLOGY", "description" => ""));
$lab_section_serology = TestCategory::create(array("name" => "SEROLOGY", "description" => ""));
$lab_section_trans = TestCategory::create(array("name" => "BLOOD TRANSFUSION", "description" => ""));
$this->command->info('Lab Sections seeded');
/* Test Types for prevalence */
$test_types_salmonella = TestType::create(array("name" => "Salmonella Antigen Test", "test_category_id" => $test_categories->id));
$test_types_direct = TestType::create(array("name" => "Direct COOMBS Test", "test_category_id" => $lab_section_trans->id));
$test_types_du = TestType::create(array("name" => "DU Test", "test_category_id" => $lab_section_trans->id));
$test_types_sickling = TestType::create(array("name" => "Sickling Test", "test_category_id" => $lab_section_hematology->id));
$test_types_borrelia = TestType::create(array("name" => "Borrelia", "test_category_id" => $test_categories->id));
$test_types_vdrl = TestType::create(array("name" => "VDRL", "test_category_id" => $lab_section_serology->id));
$test_types_pregnancy = TestType::create(array("name" => "Pregnancy Test", "test_category_id" => $lab_section_serology->id));
$test_types_brucella = TestType::create(array("name" => "Brucella", "test_category_id" => $lab_section_serology->id));
$test_types_pylori = TestType::create(array("name" => "H. Pylori", "test_category_id" => $lab_section_serology->id));
$this->command->info('Test Types seeded');
/* Test Types and specimen types relationship for prevalence */
DB::insert('INSERT INTO testtype_specimentypes (test_type_id, specimen_type_id) VALUES (?, ?)', array($test_types_salmonella->id, "13"));
DB::insert('INSERT INTO testtype_specimentypes (test_type_id, specimen_type_id) VALUES (?, ?)', array($test_types_direct->id, "23"));
DB::insert('INSERT INTO testtype_specimentypes (test_type_id, specimen_type_id) VALUES (?, ?)', array($test_types_du->id, "23"));
DB::insert('INSERT INTO testtype_specimentypes (test_type_id, specimen_type_id) VALUES (?, ?)', array($test_types_sickling->id, "23"));
DB::insert('INSERT INTO testtype_specimentypes (test_type_id, specimen_type_id) VALUES (?, ?)', array($test_types_borrelia->id, "23"));
DB::insert('INSERT INTO testtype_specimentypes (test_type_id, specimen_type_id) VALUES (?, ?)', array($test_types_vdrl->id, "13"));
DB::insert('INSERT INTO testtype_specimentypes (test_type_id, specimen_type_id) VALUES (?, ?)', array($test_types_pregnancy->id, "20"));
DB::insert('INSERT INTO testtype_specimentypes (test_type_id, specimen_type_id) VALUES (?, ?)', array($test_types_brucella->id, "13"));
DB::insert('INSERT INTO testtype_specimentypes (test_type_id, specimen_type_id) VALUES (?, ?)', array($test_types_pylori->id, "13"));
DB::insert('INSERT INTO testtype_specimentypes (test_type_id, specimen_type_id) VALUES (?, ?)', array($testTypeStoolCS->id, "16"));
$this->command->info('TestTypes/SpecimenTypes seeded');
/*New measures for prevalence*/
$measure_salmonella = Measure::create(array("measure_type_id" => "2", "name" => "Salmonella Antigen Test", "unit" => ""));
$measure_direct = Measure::create(array("measure_type_id" => "2", "name" => "Direct COOMBS Test", "unit" => ""));
$measure_du = Measure::create(array("measure_type_id" => "2", "name" => "Du Test", "unit" => ""));
$measure_sickling = Measure::create(array("measure_type_id" => "2", "name" => "Sickling Test", "unit" => ""));
$measure_borrelia = Measure::create(array("measure_type_id" => "2", "name" => "Borrelia", "unit" => ""));
$measure_vdrl = Measure::create(array("measure_type_id" => "2", "name" => "VDRL", "unit" => ""));
$measure_pregnancy = Measure::create(array("measure_type_id" => "2", "name" => "Pregnancy Test", "unit" => ""));
$measure_brucella = Measure::create(array("measure_type_id" => "2", "name" => "Brucella", "unit" => ""));
$measure_pylori = Measure::create(array("measure_type_id" => "2", "name" => "H. Pylori", "unit" => ""));
MeasureRange::create(array("measure_id" => $measure_salmonella->id, "alphanumeric" => "Positive"));
MeasureRange::create(array("measure_id" => $measure_salmonella->id, "alphanumeric" => "Negative"));
MeasureRange::create(array("measure_id" => $measure_direct->id, "alphanumeric" => "Positive"));
MeasureRange::create(array("measure_id" => $measure_direct->id, "alphanumeric" => "Negative"));
MeasureRange::create(array("measure_id" => $measure_du->id, "alphanumeric" => "Positive"));
MeasureRange::create(array("measure_id" => $measure_du->id, "alphanumeric" => "Negative"));
MeasureRange::create(array("measure_id" => $measure_sickling->id, "alphanumeric" => "Positive"));
MeasureRange::create(array("measure_id" => $measure_sickling->id, "alphanumeric" => "Negative"));
MeasureRange::create(array("measure_id" => $measure_borrelia->id, "alphanumeric" => "Positive"));
MeasureRange::create(array("measure_id" => $measure_borrelia->id, "alphanumeric" => "Negative"));
MeasureRange::create(array("measure_id" => $measure_vdrl->id, "alphanumeric" => "Positive"));
MeasureRange::create(array("measure_id" => $measure_vdrl->id, "alphanumeric" => "Negative"));
MeasureRange::create(array("measure_id" => $measure_pregnancy->id, "alphanumeric" => "Positive"));
MeasureRange::create(array("measure_id" => $measure_pregnancy->id, "alphanumeric" => "Negative"));
MeasureRange::create(array("measure_id" => $measure_brucella->id, "alphanumeric" => "Positive"));
MeasureRange::create(array("measure_id" => $measure_brucella->id, "alphanumeric" => "Negative"));
MeasureRange::create(array("measure_id" => $measure_pylori->id, "alphanumeric" => "Positive"));
MeasureRange::create(array("measure_id" => $measure_pylori->id, "alphanumeric" => "Negative"));
$this->command->info('Measures seeded again');
/* TestType Measure for prevalence */
$testtype_measure = TestTypeMeasure::create(array("test_type_id" => $test_types_salmonella->id, "measure_id" => $measure_salmonella->id));
$testtype_measure = TestTypeMeasure::create(array("test_type_id" => $test_types_direct->id, "measure_id" => $measure_direct->id));
$testtype_measure = TestTypeMeasure::create(array("test_type_id" => $test_types_du->id, "measure_id" => $measure_du->id));
$testtype_measure = TestTypeMeasure::create(array("test_type_id" => $test_types_sickling->id, "measure_id" => $measure_sickling->id));
$testtype_measure = TestTypeMeasure::create(array("test_type_id" => $test_types_borrelia->id, "measure_id" => $measure_borrelia->id));
$testtype_measure = TestTypeMeasure::create(array("test_type_id" => $test_types_vdrl->id, "measure_id" => $measure_vdrl->id));
$testtype_measure = TestTypeMeasure::create(array("test_type_id" => $test_types_pregnancy->id, "measure_id" => $measure_pregnancy->id));
$testtype_measure = TestTypeMeasure::create(array("test_type_id" => $test_types_brucella->id, "measure_id" => $measure_brucella->id));
$testtype_measure = TestTypeMeasure::create(array("test_type_id" => $test_types_pylori->id, "measure_id" => $measure_pylori->id));
$this->command->info('Test Type Measures seeded again');
/* Tests for prevalence rates */
$tests_completed_one = Test::create(array("visit_id" => "1", "test_type_id" => $test_types_salmonella->id, "specimen_id" => "4", "interpretation" => "Budda Boss", "test_status_id" => Test::COMPLETED, "created_by" => "2", "tested_by" => "3", "requested_by" => "Ariel Smith", "time_created" => "2014-07-23 15:16:15", "time_started" => "2014-07-23 16:07:15", "time_completed" => "2014-07-23 16:17:19"));
$tests_completed_two = Test::create(array("visit_id" => "2", "test_type_id" => $test_types_direct->id, "specimen_id" => "3", "interpretation" => "Budda Boss", "test_status_id" => Test::COMPLETED, "created_by" => "2", "tested_by" => "3", "requested_by" => "Ariel Smith", "time_created" => "2014-07-26 10:16:15", "time_started" => "2014-07-26 13:27:15", "time_completed" => "2014-07-26 13:57:01"));
$tests_completed_three = Test::create(array("visit_id" => "3", "test_type_id" => $test_types_du->id, "specimen_id" => "2", "interpretation" => "Budda Boss", "test_status_id" => Test::COMPLETED, "created_by" => "2", "tested_by" => "3", "requested_by" => "Ariel Smith", "time_created" => "2014-08-13 09:16:15", "time_started" => "2014-08-13 10:07:15", "time_completed" => "2014-08-13 10:18:11"));
$tests_completed_four = Test::create(array("visit_id" => "4", "test_type_id" => $test_types_sickling->id, "specimen_id" => "1", "interpretation" => "Budda Boss", "test_status_id" => Test::COMPLETED, "created_by" => "2", "tested_by" => "3", "requested_by" => "Ariel Smith", "time_created" => "2014-08-16 09:06:53", "time_started" => "2014-08-16 09:09:15", "time_completed" => "2014-08-16 09:23:37"));
$tests_completed_five = Test::create(array("visit_id" => "5", "test_type_id" => $test_types_borrelia->id, "specimen_id" => "1", "interpretation" => "Budda Boss", "test_status_id" => Test::COMPLETED, "created_by" => "2", "tested_by" => "3", "requested_by" => "Ariel Smith", "time_created" => "2014-08-23 10:16:15", "time_started" => "2014-08-23 11:54:39", "time_completed" => "2014-08-23 12:07:18"));
$tests_completed_six = Test::create(array("visit_id" => "6", "test_type_id" => $test_types_vdrl->id, "specimen_id" => "2", "interpretation" => "Budda Boss", "test_status_id" => Test::COMPLETED, "created_by" => "2", "tested_by" => "3", "requested_by" => "Ariel Smith", "time_created" => "2014-09-07 07:23:15", "time_started" => "2014-09-07 08:07:20", "time_completed" => "2014-09-07 08:41:13"));
$tests_completed_seven = Test::create(array("visit_id" => "7", "test_type_id" => $test_types_pregnancy->id, "specimen_id" => "3", "interpretation" => "Budda Boss", "test_status_id" => Test::COMPLETED, "created_by" => "2", "tested_by" => "3", "requested_by" => "Ariel Smith", "time_created" => "2014-10-03 11:52:15", "time_started" => "2014-10-03 12:31:04", "time_completed" => "2014-10-03 12:45:18"));
$tests_completed_eight = Test::create(array("visit_id" => "1", "test_type_id" => $test_types_brucella->id, "specimen_id" => "4", "interpretation" => "Budda Boss", "test_status_id" => Test::COMPLETED, "created_by" => "2", "tested_by" => "3", "requested_by" => "Ariel Smith", "time_created" => "2014-10-15 17:01:15", "time_started" => "2014-10-15 17:05:24", "time_completed" => "2014-10-15 18:07:15"));
$tests_completed_nine = Test::create(array("visit_id" => "2", "test_type_id" => $test_types_pylori->id, "specimen_id" => "4", "interpretation" => "Budda Boss", "test_status_id" => Test::COMPLETED, "created_by" => "2", "tested_by" => "3", "requested_by" => "Ariel Smith", "time_created" => "2014-10-23 16:06:15", "time_started" => "2014-10-23 16:07:15", "time_completed" => "2014-10-23 16:39:02"));
$tests_completed_ten = Test::create(array("visit_id" => "4", "test_type_id" => $test_types_salmonella->id, "specimen_id" => "3", "interpretation" => "Budda Boss", "test_status_id" => Test::COMPLETED, "created_by" => "2", "tested_by" => "3", "requested_by" => "Ariel Smith", "time_created" => "2014-10-21 19:16:15", "time_started" => "2014-10-21 19:17:15", "time_completed" => "2014-10-21 19:52:40"));
$tests_verified_one = Test::create(array("visit_id" => "3", "test_type_id" => $test_types_direct->id, "specimen_id" => "2", "interpretation" => "Budda Boss", "test_status_id" => Test::VERIFIED, "created_by" => "3", "tested_by" => "2", "verified_by" => "3", "requested_by" => "Genghiz Khan", "time_created" => "2014-07-21 19:16:15", "time_started" => "2014-07-21 19:17:15", "time_completed" => "2014-07-21 19:52:40", "time_verified" => "2014-07-21 19:53:48"));
$tests_verified_two = Test::create(array("visit_id" => "2", "test_type_id" => $test_types_du->id, "specimen_id" => "1", "interpretation" => "Budda Boss", "test_status_id" => Test::VERIFIED, "created_by" => "3", "tested_by" => "2", "verified_by" => "3", "requested_by" => "Genghiz Khan", "time_created" => "2014-08-21 19:16:15", "time_started" => "2014-08-21 19:17:15", "time_completed" => "2014-08-21 19:52:40", "time_verified" => "2014-08-21 19:53:48"));
$tests_verified_three = Test::create(array("visit_id" => "3", "test_type_id" => $test_types_sickling->id, "specimen_id" => "4", "interpretation" => "Budda Boss", "test_status_id" => Test::VERIFIED, "created_by" => "3", "tested_by" => "2", "verified_by" => "3", "requested_by" => "Genghiz Khan", "time_created" => "2014-08-26 19:16:15", "time_started" => "2014-08-26 19:17:15", "time_completed" => "2014-08-26 19:52:40", "time_verified" => "2014-08-26 19:53:48"));
$tests_verified_four = Test::create(array("visit_id" => "4", "test_type_id" => $test_types_borrelia->id, "specimen_id" => "2", "interpretation" => "Budda Boss", "test_status_id" => Test::VERIFIED, "created_by" => "3", "tested_by" => "2", "verified_by" => "3", "requested_by" => "Genghiz Khan", "time_created" => "2014-09-21 19:16:15", "time_started" => "2014-09-21 19:17:15", "time_completed" => "2014-09-21 19:52:40", "time_verified" => "2014-09-21 19:53:48"));
$tests_verified_five = Test::create(array("visit_id" => "1", "test_type_id" => $test_types_vdrl->id, "specimen_id" => "3", "interpretation" => "Budda Boss", "test_status_id" => Test::VERIFIED, "created_by" => "3", "tested_by" => "2", "verified_by" => "3", "requested_by" => "Genghiz Khan", "time_created" => "2014-09-22 19:16:15", "time_started" => "2014-09-22 19:17:15", "time_completed" => "2014-09-22 19:52:40", "time_verified" => "2014-09-22 19:53:48"));
$tests_verified_six = Test::create(array("visit_id" => "1", "test_type_id" => $test_types_pregnancy->id, "specimen_id" => "4", "interpretation" => "Budda Boss", "test_status_id" => Test::VERIFIED, "created_by" => "3", "tested_by" => "2", "verified_by" => "3", "requested_by" => "Genghiz Khan", "time_created" => "2014-09-23 19:16:15", "time_started" => "2014-09-23 19:17:15", "time_completed" => "2014-09-23 19:52:40", "time_verified" => "2014-09-23 19:53:48"));
$tests_verified_seven = Test::create(array("visit_id" => "1", "test_type_id" => $test_types_brucella->id, "specimen_id" => "2", "interpretation" => "Budda Boss", "test_status_id" => Test::VERIFIED, "created_by" => "3", "tested_by" => "2", "verified_by" => "3", "requested_by" => "Genghiz Khan", "time_created" => "2014-09-27 19:16:15", "time_started" => "2014-09-27 19:17:15", "time_completed" => "2014-09-27 19:52:40", "time_verified" => "2014-09-27 19:53:48"));
$tests_verified_eight = Test::create(array("visit_id" => "3", "test_type_id" => $test_types_pylori->id, "specimen_id" => "4", "interpretation" => "Budda Boss", "test_status_id" => Test::VERIFIED, "created_by" => "3", "tested_by" => "2", "verified_by" => "3", "requested_by" => "Genghiz Khan", "time_created" => "2014-10-22 19:16:15", "time_started" => "2014-10-22 19:17:15", "time_completed" => "2014-10-22 19:52:40", "time_verified" => "2014-10-22 19:53:48"));
$tests_verified_nine = Test::create(array("visit_id" => "4", "test_type_id" => $test_types_pregnancy->id, "specimen_id" => "3", "interpretation" => "Budda Boss", "test_status_id" => Test::VERIFIED, "created_by" => "3", "tested_by" => "2", "verified_by" => "3", "requested_by" => "Genghiz Khan", "time_created" => "2014-10-17 19:16:15", "time_started" => "2014-10-17 19:17:15", "time_completed" => "2014-10-17 19:52:40", "time_verified" => "2014-10-17 19:53:48"));
$tests_verified_ten = Test::create(array("visit_id" => "2", "test_type_id" => $test_types_pregnancy->id, "specimen_id" => "1", "interpretation" => "Budda Boss", "test_status_id" => Test::VERIFIED, "created_by" => "3", "tested_by" => "2", "verified_by" => "3", "requested_by" => "Genghiz Khan", "time_created" => "2014-10-02 19:16:15", "time_started" => "2014-10-02 19:17:15", "time_completed" => "2014-10-02 19:52:40", "time_verified" => "2014-10-02 19:53:48"));
$this->command->info('Tests seeded again');
// Test results for prevalence
$results = array(array("test_id" => $tests_completed_one->id, "measure_id" => $measure_salmonella->id, "result" => "Positive"), array("test_id" => $tests_completed_two->id, "measure_id" => $measure_direct->id, "result" => "Positive"), array("test_id" => $tests_completed_three->id, "measure_id" => $measure_du->id, "result" => "Positive"), array("test_id" => $tests_completed_four->id, "measure_id" => $measure_sickling->id, "result" => "Positive"), array("test_id" => $tests_completed_five->id, "measure_id" => $measure_borrelia->id, "result" => "Positive"), array("test_id" => $tests_completed_six->id, "measure_id" => $measure_vdrl->id, "result" => "Positive"), array("test_id" => $tests_completed_seven->id, "measure_id" => $measure_pregnancy->id, "result" => "Positive"), array("test_id" => $tests_completed_eight->id, "measure_id" => $measure_brucella->id, "result" => "Positive"), array("test_id" => $tests_completed_nine->id, "measure_id" => $measure_pylori->id, "result" => "Positive"), array("test_id" => $tests_completed_ten->id, "measure_id" => $measure_salmonella->id, "result" => "Positive"), array("test_id" => $tests_verified_one->id, "measure_id" => $measure_direct->id, "result" => "Negative"), array("test_id" => $tests_verified_two->id, "measure_id" => $measure_du->id, "result" => "Positive"), array("test_id" => $tests_verified_three->id, "measure_id" => $measure_sickling->id, "result" => "Positive"), array("test_id" => $tests_verified_four->id, "measure_id" => $measure_borrelia->id, "result" => "Negative"), array("test_id" => $tests_verified_five->id, "measure_id" => $measure_vdrl->id, "result" => "Negative"), array("test_id" => $tests_verified_six->id, "measure_id" => $measure_pregnancy->id, "result" => "Negative"), array("test_id" => $tests_verified_seven->id, "measure_id" => $measure_brucella->id, "result" => "Positive"), array("test_id" => $tests_verified_eight->id, "measure_id" => $measure_pylori->id, "result" => "Positive"), array("test_id" => $tests_verified_nine->id, "measure_id" => $measure_pregnancy->id, "result" => "Negative"), array("test_id" => $tests_verified_ten->id, "measure_id" => $measure_pregnancy->id, "result" => "Positive"));
foreach ($results as $result) {
TestResult::create($result);
}
$this->command->info('Test results seeded again');
// End prevalence rates seed
//Seed for facilities
$facilitiesSeed = array(array('name' => "WALTER REED"), array('name' => "AGA KHAN UNIVERSITY HOSPITAL"), array('name' => "TEL AVIV GENERAL HOSPITAL"), array('name' => "GK PRISON DISPENSARY"), array('name' => "KEMRI ALUPE"), array('name' => "AMPATH"));
foreach ($facilitiesSeed as $facility) {
Facility::create($facility);
}
$this->command->info('Facilities table seeded');
//Seed for suppliers
$supplier = Supplier::create(array("name" => "UNICEF", "phone_no" => "0775112233", "email" => "*****@*****.**", "physical_address" => "un-hqtr"));
$this->command->info('Suppliers table seeded');
//Seed for metrics
$metric = Metric::create(array("name" => "mg", "description" => "milligram"));
$this->command->info('Metrics table seeded');
//Seed for commodities
$commodity = Commodity::create(array("name" => "Ampicillin", "description" => "Capsule 250mg", "metric_id" => $metric->id, "unit_price" => "500", "item_code" => "no clue", "storage_req" => "no clue", "min_level" => "100000", "max_level" => "400000"));
$this->command->info('Commodities table seeded');
//Seed for receipts
$receipt = Receipt::create(array("commodity_id" => $commodity->id, "supplier_id" => $supplier->id, "quantity" => "130000", "batch_no" => "002720", "expiry_date" => "2018-10-14", "user_id" => "1"));
$this->command->info('Receipts table seeded');
//Seed for Top Up Request
$topUpRequest = TopupRequest::create(array("commodity_id" => $commodity->id, "test_category_id" => 1, "order_quantity" => "1500", "user_id" => 1, "remarks" => "-"));
$this->command->info('Top Up Requests table seeded');
//Seed for Issues
Issue::create(array("receipt_id" => $receipt->id, "topup_request_id" => $topUpRequest->id, "quantity_issued" => "1700", "issued_to" => 1, "user_id" => 1, "remarks" => "-"));
$this->command->info('Issues table seeded');
//Seed for diseases
$malaria = Disease::create(array('name' => "Malaria"));
$typhoid = Disease::create(array('name' => "Typhoid"));
$dysentry = Disease::create(array('name' => "Shigella Dysentry"));
$this->command->info("Dieases table seeded");
$reportDiseases = array(array("test_type_id" => $testTypeBS->id, "disease_id" => $malaria->id), array("test_type_id" => $test_types_salmonella->id, "disease_id" => $typhoid->id), array("test_type_id" => $testTypeStoolCS->id, "disease_id" => $dysentry->id));
foreach ($reportDiseases as $reportDisease) {
ReportDisease::create($reportDisease);
}
$this->command->info("Report Disease table seeded");
//Seeding for QC
$lots = array(array('number' => '0001', 'description' => 'First lot', 'expiry' => date('Y-m-d H:i:s', strtotime("+6 months")), 'instrument_id' => 1), array('number' => '0002', 'description' => 'Second lot', 'expiry' => date('Y-m-d H:i:s', strtotime("+7 months")), 'instrument_id' => 1));
foreach ($lots as $lot) {
$lot = Lot::create($lot);
}
$this->command->info("Lot table seeded");
//Control seeding
$controls = array(array('name' => 'Humatrol P', 'description' => 'HUMATROL P control serum has been designed to provide a suitable basis for the quality control (imprecision, inaccuracy) in the clinical chemical laboratory.', 'lot_id' => 1), array('name' => 'Full Blood Count', 'description' => 'Né pas touchér', 'lot_id' => 1));
foreach ($controls as $control) {
Control::create($control);
}
$this->command->info("Control table seeded");
//Control measures
$controlMeasures = array(array('name' => 'ca', 'unit' => 'mmol', 'control_id' => 1, 'control_measure_type_id' => 1), array('name' => 'pi', 'unit' => 'mmol', 'control_id' => 1, 'control_measure_type_id' => 1), array('name' => 'mg', 'unit' => 'mmol', 'control_id' => 1, 'control_measure_type_id' => 1), array('name' => 'na', 'unit' => 'mmol', 'control_id' => 1, 'control_measure_type_id' => 1), array('name' => 'K', 'unit' => 'mmol', 'control_id' => 1, 'control_measure_type_id' => 1), array('name' => 'WBC', 'unit' => 'x 103/uL', 'control_id' => 2, 'control_measure_type_id' => 1), array('name' => 'RBC', 'unit' => 'x 106/uL', 'control_id' => 2, 'control_measure_type_id' => 1), array('name' => 'HGB', 'unit' => 'g/dl', 'control_id' => 2, 'control_measure_type_id' => 1), array('name' => 'HCT', 'unit' => '%', 'control_id' => 2, 'control_measure_type_id' => 1), array('name' => 'MCV', 'unit' => 'fl', 'control_id' => 2, 'control_measure_type_id' => 1), array('name' => 'MCH', 'unit' => 'pg', 'control_id' => 2, 'control_measure_type_id' => 1), array('name' => 'MCHC', 'unit' => 'g/dl', 'control_id' => 2, 'control_measure_type_id' => 1), array('name' => 'PLT', 'unit' => 'x 103/uL', 'control_id' => 2, 'control_measure_type_id' => 1));
foreach ($controlMeasures as $controlMeasure) {
ControlMeasure::create($controlMeasure);
}
$this->command->info("Control Measure table seeded");
//Control measure ranges
$controlMeasureRanges = array(array('upper_range' => '2.63', 'lower_range' => '7.19', 'control_measure_id' => 1), array('upper_range' => '11.65', 'lower_range' => '15.43', 'control_measure_id' => 2), array('upper_range' => '12.13', 'lower_range' => '19.11', 'control_measure_id' => 3), array('upper_range' => '15.73', 'lower_range' => '25.01', 'control_measure_id' => 4), array('upper_range' => '17.63', 'lower_range' => '20.12', 'control_measure_id' => 5), array('upper_range' => '6.5', 'lower_range' => '7.5', 'control_measure_id' => 6), array('upper_range' => '4.36', 'lower_range' => '5.78', 'control_measure_id' => 7), array('upper_range' => '13.8', 'lower_range' => '17.3', 'control_measure_id' => 8), array('upper_range' => '81.0', 'lower_range' => '95.0', 'control_measure_id' => 9), array('upper_range' => '1.99', 'lower_range' => '2.63', 'control_measure_id' => 10), array('upper_range' => '27.6', 'lower_range' => '33.0', 'control_measure_id' => 11), array('upper_range' => '32.8', 'lower_range' => '36.4', 'control_measure_id' => 12), array('upper_range' => '141', 'lower_range' => ' 320.0', 'control_measure_id' => 13));
foreach ($controlMeasureRanges as $controlMeasureRange) {
ControlMeasureRange::create($controlMeasureRange);
}
$this->command->info("Control Measure ranges table seeded");
//Control Tests
$controlTests = array(array('entered_by' => 3, 'control_id' => 1, 'created_at' => date('Y-m-d', strtotime('-10 days'))), array('entered_by' => 3, 'control_id' => 1, 'created_at' => date('Y-m-d', strtotime('-9 days'))), array('entered_by' => 3, 'control_id' => 1, 'created_at' => date('Y-m-d', strtotime('-8 days'))), array('entered_by' => 3, 'control_id' => 1, 'created_at' => date('Y-m-d', strtotime('-7 days'))), array('entered_by' => 3, 'control_id' => 1, 'created_at' => date('Y-m-d', strtotime('-6 days'))), array('entered_by' => 3, 'control_id' => 1, 'created_at' => date('Y-m-d', strtotime('-5 days'))), array('entered_by' => 3, 'control_id' => 1, 'created_at' => date('Y-m-d', strtotime('-4 days'))), array('entered_by' => 1, 'control_id' => 2, 'created_at' => date('Y-m-d', strtotime('-3 days'))), array('entered_by' => 1, 'control_id' => 2, 'created_at' => date('Y-m-d', strtotime('-2 days'))));
foreach ($controlTests as $controltest) {
ControlTest::create($controltest);
}
$this->command->info("Control test table seeded");
//Control results
$controlResults = array(array('results' => '2.78', 'control_measure_id' => 1, 'control_test_id' => 1, 'created_at' => date('Y-m-d', strtotime('-10 days'))), array('results' => '13.56', 'control_measure_id' => 2, 'control_test_id' => 1, 'created_at' => date('Y-m-d', strtotime('-10 days'))), array('results' => '14.77', 'control_measure_id' => 3, 'control_test_id' => 1, 'created_at' => date('Y-m-d', strtotime('-10 days'))), array('results' => '25.92', 'control_measure_id' => 4, 'control_test_id' => 1, 'created_at' => date('Y-m-d', strtotime('-10 days'))), array('results' => '18.87', 'control_measure_id' => 5, 'control_test_id' => 1, 'created_at' => date('Y-m-d', strtotime('-10 days'))), array('results' => '6.78', 'control_measure_id' => 1, 'control_test_id' => 2, 'created_at' => date('Y-m-d', strtotime('-9 days'))), array('results' => '15.56', 'control_measure_id' => 2, 'control_test_id' => 2, 'created_at' => date('Y-m-d', strtotime('-9 days'))), array('results' => '18.77', 'control_measure_id' => 3, 'control_test_id' => 2, 'created_at' => date('Y-m-d', strtotime('-9 days'))), array('results' => '30.92', 'control_measure_id' => 4, 'control_test_id' => 2, 'created_at' => date('Y-m-d', strtotime('-9 days'))), array('results' => '17.87', 'control_measure_id' => 5, 'control_test_id' => 2, 'created_at' => date('Y-m-d', strtotime('-9 days'))), array('results' => '8.78', 'control_measure_id' => 1, 'control_test_id' => 3, 'created_at' => date('Y-m-d', strtotime('-8 days'))), array('results' => '17.56', 'control_measure_id' => 2, 'control_test_id' => 3, 'created_at' => date('Y-m-d', strtotime('-8 days'))), array('results' => '21.77', 'control_measure_id' => 3, 'control_test_id' => 3, 'created_at' => date('Y-m-d', strtotime('-8 days'))), array('results' => '27.92', 'control_measure_id' => 4, 'control_test_id' => 3, 'created_at' => date('Y-m-d', strtotime('-8 days'))), array('results' => '22.87', 'control_measure_id' => 5, 'control_test_id' => 3, 'created_at' => date('Y-m-d', strtotime('-8 days'))), array('results' => '6.78', 'control_measure_id' => 1, 'control_test_id' => 4, 'created_at' => date('Y-m-d', strtotime('-7 days'))), array('results' => '18.56', 'control_measure_id' => 2, 'control_test_id' => 4, 'created_at' => date('Y-m-d', strtotime('-7 days'))), array('results' => '19.77', 'control_measure_id' => 3, 'control_test_id' => 4, 'created_at' => date('Y-m-d', strtotime('-7 days'))), array('results' => '12.92', 'control_measure_id' => 4, 'control_test_id' => 4, 'created_at' => date('Y-m-d', strtotime('-7 days'))), array('results' => '22.87', 'control_measure_id' => 5, 'control_test_id' => 4, 'created_at' => date('Y-m-d', strtotime('-7 days'))), array('results' => '3.78', 'control_measure_id' => 1, 'control_test_id' => 5, 'created_at' => date('Y-m-d', strtotime('-6 days'))), array('results' => '16.56', 'control_measure_id' => 2, 'control_test_id' => 5, 'created_at' => date('Y-m-d', strtotime('-6 days'))), array('results' => '17.77', 'control_measure_id' => 3, 'control_test_id' => 5, 'created_at' => date('Y-m-d', strtotime('-6 days'))), array('results' => '28.92', 'control_measure_id' => 4, 'control_test_id' => 5, 'created_at' => date('Y-m-d', strtotime('-6 days'))), array('results' => '19.87', 'control_measure_id' => 5, 'control_test_id' => 5, 'created_at' => date('Y-m-d', strtotime('-6 days'))), array('results' => '5.78', 'control_measure_id' => 1, 'control_test_id' => 6, 'created_at' => date('Y-m-d', strtotime('-5 days'))), array('results' => '15.56', 'control_measure_id' => 2, 'control_test_id' => 6, 'created_at' => date('Y-m-d', strtotime('-5 days'))), array('results' => '11.77', 'control_measure_id' => 3, 'control_test_id' => 6, 'created_at' => date('Y-m-d', strtotime('-5 days'))), array('results' => '29.92', 'control_measure_id' => 4, 'control_test_id' => 6, 'created_at' => date('Y-m-d', strtotime('-5 days'))), array('results' => '14.87', 'control_measure_id' => 5, 'control_test_id' => 6, 'created_at' => date('Y-m-d', strtotime('-5 days'))), array('results' => '9.78', 'control_measure_id' => 1, 'control_test_id' => 7, 'created_at' => date('Y-m-d', strtotime('-4 days'))), array('results' => '11.56', 'control_measure_id' => 2, 'control_test_id' => 7, 'created_at' => date('Y-m-d', strtotime('-4 days'))), array('results' => '19.77', 'control_measure_id' => 3, 'control_test_id' => 7, 'created_at' => date('Y-m-d', strtotime('-4 days'))), array('results' => '32.92', 'control_measure_id' => 4, 'control_test_id' => 7, 'created_at' => date('Y-m-d', strtotime('-4 days'))), array('results' => '29.87', 'control_measure_id' => 5, 'control_test_id' => 7, 'created_at' => date('Y-m-d', strtotime('-4 days'))), array('results' => '5.45', 'control_measure_id' => 6, 'control_test_id' => 8, 'created_at' => date('Y-m-d', strtotime('-3 days'))), array('results' => '5.01', 'control_measure_id' => 7, 'control_test_id' => 8, 'created_at' => date('Y-m-d', strtotime('-3 days'))), array('results' => '12.3', 'control_measure_id' => 8, 'control_test_id' => 8, 'created_at' => date('Y-m-d', strtotime('-3 days'))), array('results' => '89.7', 'control_measure_id' => 9, 'control_test_id' => 8, 'created_at' => date('Y-m-d', strtotime('-3 days'))), array('results' => '2.15', 'control_measure_id' => 10, 'control_test_id' => 8, 'created_at' => date('Y-m-d', strtotime('-3 days'))), array('results' => '34.0', 'control_measure_id' => 11, 'control_test_id' => 8, 'created_at' => date('Y-m-d', strtotime('-3 days'))), array('results' => '37.2', 'control_measure_id' => 12, 'control_test_id' => 8, 'created_at' => date('Y-m-d', strtotime('-3 days'))), array('results' => '141.5', 'control_measure_id' => 13, 'control_test_id' => 8, 'created_at' => date('Y-m-d', strtotime('-3 days'))), array('results' => '7.45', 'control_measure_id' => 6, 'control_test_id' => 9, 'created_at' => date('Y-m-d', strtotime('-2 days'))), array('results' => '9.01', 'control_measure_id' => 7, 'control_test_id' => 9, 'created_at' => date('Y-m-d', strtotime('-2 days'))), array('results' => '9.3', 'control_measure_id' => 8, 'control_test_id' => 9, 'created_at' => date('Y-m-d', strtotime('-2 days'))), array('results' => '94.7', 'control_measure_id' => 9, 'control_test_id' => 9, 'created_at' => date('Y-m-d', strtotime('-2 days'))), array('results' => '12.15', 'control_measure_id' => 10, 'control_test_id' => 9, 'created_at' => date('Y-m-d', strtotime('-2 days'))), array('results' => '37.0', 'control_measure_id' => 11, 'control_test_id' => 9, 'created_at' => date('Y-m-d', strtotime('-2 days'))), array('results' => '30.2', 'control_measure_id' => 12, 'control_test_id' => 9, 'created_at' => date('Y-m-d', strtotime('-2 days'))), array('results' => '121.5', 'control_measure_id' => 13, 'control_test_id' => 9, 'created_at' => date('Y-m-d', strtotime('-2 days'))));
foreach ($controlResults as $controlResult) {
ControlMeasureResult::create($controlResult);
}
$this->command->info("Control results table seeded");
}
/**
* turnaroundTime() function returns the turnaround time blade with necessary contents
*
* @return Response
*/
public function turnaroundTime()
{
$today = date('Y-m-d');
$from = Input::get('start');
$to = Input::get('end');
if (!$to) {
$to = $today;
}
$testCategory = Input::get('section_id');
$testType = Input::get('test_type');
$labSections = TestCategory::lists('name', 'id');
$interval = Input::get('period');
$error = null;
if ($testCategory) {
$testTypes = TestCategory::find($testCategory)->testTypes->lists('name', 'id');
} else {
$testTypes = array("" => "");
}
if ($from || $to) {
if (strtotime($from) > strtotime($to) || strtotime($from) > strtotime($today) || strtotime($to) > strtotime($today)) {
$error = trans('messages.check-date-range');
} else {
$toPlusOne = date_add(new DateTime($to), date_interval_create_from_date_string('1 day'));
Session::flash('fine', '');
}
}
$resultset = self::getTatStats($from, $to, $testCategory, $testType, $interval);
return View::make('reports.tat.index')->with('labSections', $labSections)->with('testTypes', $testTypes)->with('resultset', $resultset)->with('testCategory', $testCategory)->with('testType', $testType)->with('interval', $interval)->with('error', $error)->withInput(Input::all());
}
//Total score
if ($origin != 'learnpath' || $origin == 'learnpath' && isset($_GET['fb_type'])) {
if ($show_results || $show_only_total_score) {
$total_score_text .= '<div class="question_row">';
$my_total_score_temp = $totalScore;
if ($objExercise->selectPropagateNeg() == 0 && $my_total_score_temp < 0) {
$my_total_score_temp = 0;
}
$total_score_text .= ExerciseLib::get_question_ribbon($objExercise, $my_total_score_temp, $totalWeighting, true);
$total_score_text .= '</div>';
}
}
if (!empty($category_list) && ($show_results || $show_only_total_score)) {
// Adding total
$category_list['total'] = array('score' => $my_total_score_temp, 'total' => $totalWeighting);
echo TestCategory::get_stats_table_by_attempt($objExercise->id, $category_list);
}
echo $total_score_text;
echo $exercise_content;
echo $total_score_text;
if ($isFeedbackAllowed) {
if (is_array($arrid) && is_array($arrmarks)) {
$strids = implode(",", $arrid);
$marksid = implode(",", $arrmarks);
}
}
if ($isFeedbackAllowed) {
if (in_array($origin, array('tracking_course', 'user_course', 'correct_exercise_in_lp'))) {
echo '<form name="myform" id="myform" action="' . api_get_path(WEB_CODE_PATH) . 'exercice/exercise_report.php?' . api_get_cidreq() . '&exerciseId=' . $exercise_id . '&filter=2&comments=update&exeid=' . $id . '&origin=' . $origin . '&details=true&course=' . Security::remove_XSS($_GET['cidReq']) . $fromlink . '" method="post">';
echo '<input type = "hidden" name="lp_item_id" value="' . $learnpath_id . '">';
echo '<input type = "hidden" name="lp_item_view_id" value="' . $lp_item_view_id . '">';
/**
* Recycle tests categories
*/
public function recycle_test_category()
{
if (isset($this->course->resources[RESOURCE_TEST_CATEGORY])) {
foreach ($this->course->resources[RESOURCE_TEST_CATEGORY] as $tab_test_cat) {
$obj_cat = new TestCategory($tab_test_cat->source_id);
$obj_cat->removeCategory();
}
}
}
/**
* Show the form for editing the specified resource.
*
* @param int $id
* @return Response
*/
public function edit($id)
{
//Get the testtype
$testtype = TestType::find($id);
$measures = Measure::all();
$measuretype = MeasureType::all()->sortBy('id');
$specimentypes = SpecimenType::orderBy('name')->get();
$testcategory = TestCategory::all();
$organisms = Organism::orderBy('name')->get();
//Open the Edit View and pass to it the $testtype
return View::make('testtype.edit')->with('testtype', $testtype)->with('testcategory', $testcategory)->with('measures', $measures)->with('measuretype', $measuretype)->with('specimentypes', $specimentypes)->with('organisms', $organisms);
}
/**
* Return the name of the category for the question in a course
* @author hubert.borderiou 13-10-2011
*/
function get_question_categorie_for_question($in_courseid, $in_questionid)
{
$cat = TestCategory::getCategoryNameForQuestion($in_questionid, $in_courseid);
return $cat;
}
}
}
// Number of questions
$random_label = null;
if ($row['random'] > 0 || $row['random'] == -1) {
// if random == -1 means use random questions with all questions
$random_number_of_question = $row['random'];
if ($random_number_of_question == -1) {
$random_number_of_question = $rowi;
}
if ($row['random_by_category'] > 0) {
$nbQuestionsTotal = TestCategory::getNumberOfQuestionRandomByCategory($my_exercise_id, $random_number_of_question);
$number_of_questions = $nbQuestionsTotal . " ";
$number_of_questions .= $nbQuestionsTotal > 1 ? get_lang("QuestionsLowerCase") : get_lang("QuestionLowerCase");
$number_of_questions .= " - ";
$number_of_questions .= min(TestCategory::getNumberMaxQuestionByCat($my_exercise_id), $random_number_of_question) . ' ' . get_lang('QuestionByCategory');
} else {
$random_label = ' (' . get_lang('Random') . ') ';
$number_of_questions = $random_number_of_question . ' ' . $random_label;
//Bug if we set a random value bigger than the real number of questions
if ($random_number_of_question > $rowi) {
$number_of_questions = $rowi . ' ' . $random_label;
}
}
} else {
$number_of_questions = $rowi;
}
//Attempts
//$attempts = ExerciseLib::get_count_exam_results($row['id']).' '.get_lang('Attempts');
//$item .= Display::tag('td',$attempts);
$item .= Display::tag('td', $number_of_questions);
/**
* MOH 706
*
*/
public function moh706()
{
// Variables definition
$date = date('Y-m-d');
$from = Input::get('start');
if (!$from) {
$from = date('Y-m-01');
}
$end = Input::get('end');
if (!$end) {
$end = $date;
}
$toPlusOne = date_add(new DateTime($end), date_interval_create_from_date_string('1 day'));
$to = date_add(new DateTime($end), date_interval_create_from_date_string('1 day'))->format('Y-m-d');
$ageRanges = array('0-5', '5-14', '14-120');
$sex = array(Patient::MALE, Patient::FEMALE);
$ranges = array('Low', 'Normal', 'High');
$specimen_types = array('Urine', 'Pus', 'HVS', 'Throat', 'Stool', 'Blood', 'CSF', 'Water', 'Food', 'Other fluids');
$isolates = array('Naisseria', 'Klebsiella', 'Staphylococci', 'Streptoccoci' . 'Proteus', 'Shigella', 'Salmonella', 'V. cholera', 'E. coli', 'C. neoformans', 'Cardinella vaginalis', 'Haemophilus', 'Bordotella pertusis', 'Pseudomonas', 'Coliforms', 'Faecal coliforms', 'Enterococcus faecalis', 'Total viable counts-22C', 'Total viable counts-37C', 'Clostridium', 'Others');
// Get specimen_types for microbiology
$labSecId = TestCategory::getTestCatIdByName('microbiology');
$specTypeIds = DB::select(DB::raw("select distinct(specimen_types.id) as spec_id from testtype_specimentypes" . " join test_types on test_types.id=testtype_specimentypes.test_type_id" . " join specimen_types on testtype_specimentypes.specimen_type_id=specimen_types.id" . " where test_types.test_category_id=?"), array($labSecId));
// Referred out specimen
$referredSpecimens = DB::select(DB::raw("SELECT specimen_type_id, specimen_types.name as spec, count(specimens.id) as tot," . " facility_id, facilities.name as facility FROM iblis.specimens" . " join referrals on specimens.referral_id=referrals.id" . " join specimen_types on specimen_type_id=specimen_types.id" . " join facilities on referrals.facility_id=facilities.id" . " where referral_id is not null and status=1" . " and time_accepted between ? and ?" . " group by facility_id;"), array($from, $toPlusOne));
$table = '<!-- URINALYSIS -->
<div class="col-sm-12">
<strong>URINE ANALYSIS</strong>
<table class="table table-condensed report-table-border">
<thead>
<tr>
<th rowspan="2">Urine Chemistry</th>
<th colspan="2">No. Exam</th>
<th colspan="4"> Number positive</th>
</tr>
<tr>
<th>M</th>
<th>F</th>
<th>Total</th>
<th><5yrs</th>
<th>5-14yrs</th>
<th>>14yrs</th>
</tr>
</thead>';
$urinaId = TestType::getTestTypeIdByTestName('Urinalysis');
$urinalysis = TestType::find($urinaId);
$urineChem = TestType::getTestTypeIdByTestName('Urine Chemistry');
$urineChemistry = TestType::find($urineChem);
$measures = TestTypeMeasure::where('test_type_id', $urinaId)->orderBy('measure_id', 'DESC')->get();
$table .= '<tbody>
<tr>
<td>Totals</td>';
foreach ($sex as $gender) {
$table .= '<td>' . ($this->getGroupedTestCounts($urinalysis, [$gender], null, $from, $toPlusOne) + $this->getGroupedTestCounts($urineChemistry, [$gender], null, $from, $toPlusOne)) . '</td>';
}
$table .= '<td>' . ($this->getGroupedTestCounts($urinalysis, null, null, $from, $toPlusOne) + $this->getGroupedTestCounts($urineChemistry, null, null, $from, $toPlusOne)) . '</td>';
foreach ($ageRanges as $ageRange) {
$table .= '<td>' . ($this->getGroupedTestCounts($urinalysis, [Patient::MALE, Patient::FEMALE], $ageRange, $from, $toPlusOne) + $this->getGroupedTestCounts($urineChemistry, [Patient::MALE, Patient::FEMALE], $ageRange, $from, $toPlusOne)) . '</td>';
}
$table .= '</tr>';
foreach ($measures as $measure) {
$tMeasure = Measure::find($measure->measure_id);
if (in_array($tMeasure->name, ['ph', 'Epithelial cells', 'Pus cells', 'S. haematobium', 'T. vaginalis', 'Yeast cells', 'Red blood cells', 'Bacteria', 'Spermatozoa'])) {
continue;
}
$table .= '<tr>
<td>' . $tMeasure->name . '</td>';
foreach ($sex as $gender) {
$table .= '<td>' . $this->getTotalTestResults($tMeasure, [$gender], null, $from, $toPlusOne, null, null) . '</td>';
}
$table .= '<td>' . $this->getTotalTestResults($tMeasure, $sex, null, $from, $toPlusOne, null, 1) . '</td>';
foreach ($ageRanges as $ageRange) {
$table .= '<td>' . $this->getTotalTestResults($tMeasure, null, $ageRange, $from, $toPlusOne, null, 1) . '</td>';
}
$table .= '</tr>';
}
$table .= '<tr>
<td>Others</td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
</tbody>
</table>
<table class="table table-condensed report-table-border">
<thead>
<tr>
<th rowspan="2">Urine Microscopy</th>
<th colspan="2">No. Exam</th>
<th colspan="4"> Number positive</th>
</tr>
<tr>
<th>M</th>
<th>F</th>
<th>Total</th>
<th><5yrs</th>
<th>5-14yrs</th>
<th>>14yrs</th>
</tr>
</thead>
<tbody>
<tr>
<td>Totals</td>';
$urineMic = TestType::getTestTypeIdByTestName('Urine Microscopy');
$urineMicroscopy = TestType::find($urineMic);
$measures = TestTypeMeasure::where('test_type_id', $urinaId)->orderBy('measure_id', 'DESC')->get();
foreach ($sex as $gender) {
$table .= '<td>' . ($this->getGroupedTestCounts($urinalysis, [$gender], null, $from, $toPlusOne) + $this->getGroupedTestCounts($urineMicroscopy, [$gender], null, $from, $toPlusOne)) . '</td>';
}
$table .= '<td>' . ($this->getGroupedTestCounts($urinalysis, null, null, $from, $toPlusOne) + $this->getGroupedTestCounts($urineMicroscopy, null, null, $from, $toPlusOne)) . '</td>';
foreach ($ageRanges as $ageRange) {
$table .= '<td>' . ($this->getGroupedTestCounts($urinalysis, [Patient::MALE, Patient::FEMALE], $ageRange, $from, $toPlusOne) + $this->getGroupedTestCounts($urineMicroscopy, [Patient::MALE, Patient::FEMALE], $ageRange, $from, $toPlusOne)) . '</td>';
}
$table .= '</tr>';
foreach ($measures as $measure) {
$tMeasure = Measure::find($measure->measure_id);
if (in_array($tMeasure->name, ['Leucocytes', 'Nitrites', 'Glucose', 'pH', 'Bilirubin', 'Ketones', 'Proteins', 'Blood', 'Urobilinogen Phenlpyruvic acid'])) {
continue;
}
$table .= '<tr>
<td>' . $tMeasure->name . '</td>';
foreach ($sex as $gender) {
$table .= '<td>' . $this->getTotalTestResults($tMeasure, [$gender], null, $from, $toPlusOne, null, null) . '</td>';
}
$table .= '<td>' . $this->getTotalTestResults($tMeasure, $sex, null, $from, $toPlusOne, null, 1) . '</td>';
foreach ($ageRanges as $ageRange) {
$table .= '<td>' . $this->getTotalTestResults($tMeasure, null, $ageRange, $from, $toPlusOne, null, 1) . '</td>';
}
$table .= '</tr>';
}
$table .= '<tr>
<td>Others</td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
</tbody>
</table>
<table class="table table-condensed report-table-border">
<thead>
<tr>
<th rowspan="2">Blood Chemistry</th>
<th colspan="2">No. Exam</th>
<th colspan="4"> Number positive</th>
</tr>
<tr>
<th>M</th>
<th>F</th>
<th>Total</th>
<th>Low</th>
<th>Normal</th>
<th>High</th>
</tr>
</thead>
<tbody>';
$bloodChem = TestType::getTestTypeIdByTestName('Blood Sugar');
$bloodChemistry = TestType::find($bloodChem);
$measures = TestTypeMeasure::where('test_type_id', $bloodChem)->orderBy('measure_id', 'DESC')->get();
$table .= '<tr>
<td>Totals</td>';
foreach ($sex as $gender) {
$table .= '<td>' . $this->getGroupedTestCounts($bloodChemistry, [$gender], null, $from, $toPlusOne) . '</td>';
}
$table .= '<td>' . $this->getGroupedTestCounts($bloodChemistry, null, null, $from, $toPlusOne) . '</td>';
foreach ($ageRanges as $ageRange) {
$table .= '<td>' . $this->getGroupedTestCounts($bloodChemistry, [Patient::MALE, Patient::FEMALE], $ageRange, $from, $toPlusOne) . '</td>';
}
foreach ($measures as $measure) {
$tMeasure = Measure::find($measure->measure_id);
$table .= '<tr>
<td>' . $tMeasure->name . '</td>';
foreach ($sex as $gender) {
$table .= '<td>' . $this->getTotalTestResults($tMeasure, [$gender], null, $from, $toPlusOne, null, null) . '</td>';
}
$table .= '<td>' . $this->getTotalTestResults($tMeasure, $sex, null, $from, $toPlusOne, ['Low', 'Normal', 'High'], null) . '</td>';
foreach ($ranges as $range) {
$table .= '<td>' . $this->getTotalTestResults($tMeasure, null, null, $from, $toPlusOne, [$range], 1) . '</td>';
}
$table .= '</tr>';
}
$table .= '<tr>
<td>OGTT</td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
</tbody>
</table>
<table class="table table-condensed report-table-border">
<thead>
<tr>
<th rowspan="2">Renal function tests</th>
<th colspan="2">No. Exam</th>
<th colspan="4"> Number positive</th>
</tr>
<tr>
<th>M</th>
<th>F</th>
<th>Total</th>
<th>Low</th>
<th>Normal</th>
<th>High</th>
</tr>
</thead>
<tbody>';
$rfts = TestType::getTestTypeIdByTestName('RFTS');
$rft = TestType::find($rfts);
$measures = TestTypeMeasure::where('test_type_id', $rfts)->orderBy('measure_id', 'DESC')->get();
$table .= '<tr>
<td>Totals</td>';
foreach ($sex as $gender) {
$table .= '<td>' . $this->getGroupedTestCounts($rft, [$gender], null, $from, $toPlusOne) . '</td>';
}
$table .= '<td>' . $this->getGroupedTestCounts($rft, null, null, $from, $toPlusOne) . '</td>';
foreach ($ageRanges as $ageRange) {
$table .= '<td>' . $this->getGroupedTestCounts($rft, [Patient::MALE, Patient::FEMALE], $ageRange, $from, $toPlusOne) . '</td>';
}
$table .= '</tr>';
foreach ($measures as $measure) {
$name = Measure::find($measure->measure_id)->name;
if ($name == 'Electrolytes') {
continue;
}
$tMeasure = Measure::find($measure->measure_id);
$table .= '<tr>
<td>' . $tMeasure->name . '</td>';
foreach ($sex as $gender) {
$table .= '<td>' . $this->getTotalTestResults($tMeasure, [$gender], null, $from, $toPlusOne, null, null) . '</td>';
}
$table .= '<td>' . $this->getTotalTestResults($tMeasure, $sex, null, $from, $toPlusOne, null, 1) . '</td>';
foreach ($ranges as $range) {
$table .= '<td>' . $this->getTotalTestResults($tMeasure, null, null, $from, $toPlusOne, [$range], 1) . '</td>';
}
$table .= '</tr>';
}
$table .= '</tbody>
</table>
<table class="table table-condensed report-table-border">
<thead>
<tr>
<th rowspan="2">Liver Function Tests</th>
<th colspan="2">No. Exam</th>
<th colspan="4"> Number positive</th>
</tr>
<tr>
<th>M</th>
<th>F</th>
<th>Total</th>
<th>Low</th>
<th>Normal</th>
<th>High</th>
</tr>
</thead>
<tbody>';
$lfts = TestType::getTestTypeIdByTestName('LFTS');
$lft = TestType::find($lfts);
$measures = TestTypeMeasure::where('test_type_id', $lfts)->orderBy('measure_id', 'DESC')->get();
$table .= '<tr>
<td>Totals</td>';
foreach ($sex as $gender) {
$table .= '<td>' . $this->getGroupedTestCounts($lft, [$gender], null, $from, $toPlusOne) . '</td>';
}
$table .= '<td>' . $this->getGroupedTestCounts($lft, null, null, $from, $toPlusOne) . '</td>';
foreach ($ageRanges as $ageRange) {
$table .= '<td>' . $this->getGroupedTestCounts($lft, [Patient::MALE, Patient::FEMALE], $ageRange, $from, $toPlusOne) . '</td>';
}
$table .= '</tr>';
foreach ($measures as $measure) {
$name = Measure::find($measure->measure_id)->name;
if ($name == 'SGOT') {
$name = 'ASAT (SGOT)';
}
if ($name == 'ALAT') {
$name = 'ASAT (SGPT)';
}
if ($name == 'Total Proteins') {
$name = 'Serum Protein';
}
$tMeasure = Measure::find($measure->measure_id);
$table .= '<tr>
<td>' . $tMeasure->name . '</td>';
foreach ($sex as $gender) {
$table .= '<td>' . $this->getTotalTestResults($tMeasure, [$gender], null, $from, $toPlusOne, null, null) . '</td>';
}
$table .= '<td>' . $this->getTotalTestResults($tMeasure, $sex, null, $from, $toPlusOne, null, 1) . '</td>';
foreach ($ranges as $range) {
$table .= '<td>' . $this->getTotalTestResults($tMeasure, null, null, $from, $toPlusOne, [$range], 1) . '</td>';
}
$table .= '</tr>';
}
$table .= '<tr>
<td>Gamma GT</td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
</tbody>
</table>
<table class="table table-condensed report-table-border">
<thead>
<tr>
<th rowspan="2">Lipid Profile</th>
<th colspan="2">No. Exam</th>
<th colspan="4"> Number positive</th>
</tr>
<tr>
<th>M</th>
<th>F</th>
<th>Total</th>
<th>Low</th>
<th>Normal</th>
<th>High</th>
</tr>
</thead>
<tbody>
<tr>
<td>Totals</td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr><tr>
<td>Amylase</td>';
$tMeasure = Measure::find(Measure::getMeasureIdByName('Serum Amylase'));
foreach ($sex as $gender) {
$table .= '<td>' . $this->getTotalTestResults($tMeasure, [$gender], null, $from, $toPlusOne, null, null) . '</td>';
}
$table .= '<td>' . $this->getTotalTestResults($tMeasure, $sex, null, $from, $toPlusOne, null, 1) . '</td>';
foreach ($ranges as $range) {
$table .= '<td>' . $this->getTotalTestResults($tMeasure, null, $ageRange, $from, $toPlusOne, [$range], 1) . '</td>';
}
$table .= '</tr><tr>
<td>Total cholestrol</td>';
$tMeasure = Measure::find(Measure::getMeasureIdByName('cholestrol'));
foreach ($sex as $gender) {
$table .= '<td>' . $this->getTotalTestResults($tMeasure, [$gender], null, $from, $toPlusOne, null, null) . '</td>';
}
$table .= '<td>' . $this->getTotalTestResults($tMeasure, $sex, null, $from, $toPlusOne, null, 1) . '</td>';
foreach ($ranges as $range) {
$table .= '<td>' . $this->getTotalTestResults($tMeasure, null, null, $from, $toPlusOne, [$range], 1) . '</td>';
}
$table .= '</tr><tr>
<td>Tryglycerides</td>';
$tMeasure = Measure::find(Measure::getMeasureIdByName('Tryglycerides'));
foreach ($sex as $gender) {
$table .= '<td>' . $this->getTotalTestResults($tMeasure, [$gender], null, $from, $toPlusOne, null, null) . '</td>';
}
$table .= '<td>' . $this->getTotalTestResults($tMeasure, $sex, null, $from, $toPlusOne, null, 1) . '</td>';
foreach ($ranges as $range) {
$table .= '<td>' . $this->getTotalTestResults($tMeasure, null, null, $from, $toPlusOne, [$range], 1) . '</td>';
}
$table .= '</tr><tr>
<td>HDL</td>';
$tMeasure = Measure::find(Measure::getMeasureIdByName('HDL'));
foreach ($sex as $gender) {
$table .= '<td>' . $this->getTotalTestResults($tMeasure, [$gender], null, $from, $toPlusOne, null, null) . '</td>';
}
$table .= '<td>' . $this->getTotalTestResults($tMeasure, $sex, null, $from, $toPlusOne, null, 1) . '</td>';
foreach ($ranges as $range) {
$table .= '<td>' . $this->getTotalTestResults($tMeasure, null, null, $from, $toPlusOne, [$range], 1) . '</td>';
}
$table .= '</tr><tr>
<td>LDL</td>';
$tMeasure = Measure::find(Measure::getMeasureIdByName('LDL'));
foreach ($sex as $gender) {
$table .= '<td>' . $this->getTotalTestResults($tMeasure, [$gender], null, $from, $toPlusOne, null, null) . '</td>';
}
$table .= '<td>' . $this->getTotalTestResults($tMeasure, $sex, null, $from, $toPlusOne, null, 1) . '</td>';
foreach ($ranges as $range) {
$table .= '<td>' . $this->getTotalTestResults($tMeasure, null, null, $from, $toPlusOne, [$range], 1) . '</td>';
}
$table .= '</tr>
</tbody>
</table>
<table class="table table-condensed report-table-border">
<thead>
<tr>
<th rowspan="2">CSF Chemistry</th>
<th colspan="2">No. Exam</th>
<th colspan="4"> Number positive</th>
</tr>
<tr>
<th>M</th>
<th>F</th>
<th>Total</th>
<th>Low</th>
<th>Normal</th>
<th>High</th>
</tr>
</thead>
<tbody>';
$csf = TestType::getTestTypeIdByTestName('CSF for biochemistry');
$bioCsf = TestType::find($csf);
$table .= '<tr>
<td>Totals</td>';
foreach ($sex as $gender) {
$table .= '<td>' . $this->getGroupedTestCounts($bioCsf, [$gender], null, $from, $toPlusOne) . '</td>';
}
$table .= '<td>' . $this->getGroupedTestCounts($bioCsf, null, null, $from, $toPlusOne) . '</td>';
foreach ($ageRanges as $ageRange) {
$table .= '<td>' . $this->getGroupedTestCounts($bioCsf, [Patient::MALE, Patient::FEMALE], $ageRange, $from, $toPlusOne) . '</td>';
}
$table .= '</tr>';
$measures = TestTypeMeasure::where('test_type_id', $csf)->orderBy('measure_id', 'DESC')->get();
foreach ($measures as $measure) {
$name = Measure::find($measure->measure_id)->name;
$table .= '<tr>
<td>' . $name . '</td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>';
}
$table .= '</tbody>
</table>
<table class="table table-condensed report-table-border">
<thead>
<tr>
<th rowspan="2">Body Fluids</th>
<th colspan="2">No. Exam</th>
<th colspan="4"> Number positive</th>
</tr>
<tr>
<th>M</th>
<th>F</th>
<th>Total</th>
<th>Low</th>
<th>Normal</th>
<th>High</th>
</tr>
</thead>
<tbody>
<tr>
<td>Totals</td>
<td>0</td>
<td>0</td>
<td>0</td>
<td>0</td>
<td>0</td>
<td>0</td>
</tr>
<tr>
<td>Proteins</td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
<tr>
<td>Glucose</td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
<tr>
<td>Acid phosphatase</td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
<tr>
<td>Bence jones protein</td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
</tbody>
</table>
<table class="table table-condensed report-table-border">
<thead>
<tr>
<th rowspan="2">Thyroid Function Tests</th>
<th colspan="2">No. Exam</th>
<th colspan="4"> Number positive</th>
</tr>
<tr>
<th>M</th>
<th>F</th>
<th>Total</th>
<th>Low</th>
<th>Normal</th>
<th>High</th>
</tr>
</thead>
<tbody>';
$tfts = TestType::getTestTypeIdByTestName('TFT');
$tft = TestType::find($tfts);
$table .= '<tr>
<td>Totals</td>';
foreach ($sex as $gender) {
$table .= '<td>' . $this->getGroupedTestCounts($tft, [$gender], null, $from, $toPlusOne) . '</td>';
}
$table .= '<td>' . $this->getGroupedTestCounts($tft, null, null, $from, $toPlusOne) . '</td>';
foreach ($ageRanges as $ageRange) {
$table .= '<td>' . $this->getGroupedTestCounts($tft, [Patient::MALE, Patient::FEMALE], $ageRange, $from, $toPlusOne) . '</td>';
}
$table .= '</tr>';
$measures = TestTypeMeasure::where('test_type_id', $tfts)->orderBy('measure_id', 'ASC')->get();
foreach ($measures as $measure) {
$tMeasure = Measure::find($measure->measure_id);
$table .= '<tr>
<td>' . $tMeasure->name . '</td>';
foreach ($sex as $gender) {
$table .= '<td>' . $this->getTotalTestResults($tMeasure, [$gender], null, $from, $toPlusOne, null, null) . '</td>';
}
$table .= '<td>' . $this->getTotalTestResults($tMeasure, $sex, null, $from, $toPlusOne, null, 1) . '</td>';
foreach ($ranges as $range) {
$table .= '<td>' . $this->getTotalTestResults($tMeasure, null, null, $from, $toPlusOne, [$range]) . '</td>';
}
$table .= '</tr>';
}
$table .= '<tr>
<td>Others</td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
</tbody>
</table>
</div>
<!-- URINALYSIS -->
<!-- PARASITOLOGY -->
<div class="col-sm-12">
<strong>PARASITOLOGY</strong>
<table class="table table-condensed report-table-border">
<thead>
<tr>
<th colspan="5">Blood Smears</th>
</tr>
<tr>
<th rowspan="2">Malaria</th>
<th colspan="4">Positive</th>
</tr>
<tr>
<th>Total Done</th>
<th><5yrs</th>
<th>5-14yrs</th>
<th>>14yrs</th>
</tr>
</thead>';
$bs = TestType::getTestTypeIdByTestName('Bs for mps');
$bs4mps = TestType::find($bs);
$table .= '<tbody>
<tr>
<td></td>
<td>' . $this->getGroupedTestCounts($bs4mps, null, null, $from, $toPlusOne) . '</td>';
foreach ($ageRanges as $ageRange) {
$table .= '<td>' . $this->getGroupedTestCounts($bs4mps, null, $ageRange, $from, $toPlusOne) . '</td>';
}
$table .= '</tr>
<tr style="text-align:right;">
<td>Falciparum</td>
<td style="background-color: #CCCCCC;"></td>
<td></td>
<td></td>
<td></td>
</tr>
<tr style="text-align:right;">
<td>Ovale</td>
<td style="background-color: #CCCCCC;"></td>
<td></td>
<td></td>
<td></td>
</tr>
<tr style="text-align:right;">
<td>Malariae</td>
<td style="background-color: #CCCCCC;"></td>
<td></td>
<td></td>
<td></td>
</tr>
<tr style="text-align:right;">
<td>Vivax</td>
<td style="background-color: #CCCCCC;"></td>
<td></td>
<td></td>
<td></td>
</tr>
<tr>
<td><strong>Borrelia</strong></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
<tr>
<td><strong>Microfilariae</strong></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
<tr>
<td><strong>Trypanosomes</strong></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
<tr>
<td colspan="5"><strong>Genital Smears</strong></td>
</tr>
<tr>
<td>Total</td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
<tr>
<td>T. vaginalis</td>
<td style="background-color: #CCCCCC;"></td>
<td></td>
<td></td>
<td></td>
</tr>
<tr>
<td>S. haematobium</td>
<td style="background-color: #CCCCCC;"></td>
<td></td>
<td></td>
<td></td>
</tr>
<tr>
<td>Yeast cells</td>
<td style="background-color: #CCCCCC;"></td>
<td></td>
<td></td>
<td></td>
</tr>
<tr>
<td>Others</td>
<td style="background-color: #CCCCCC;"></td>
<td></td>
<td></td>
<td></td>
</tr>
<tr>
<td colspan="5"><strong>Spleen/bone marrow</strong></td>
</tr>
<tr>
<td>Total</td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
<tr>
<td>L. donovani</td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
<tr>';
$stool = TestType::getTestTypeIdByTestName('Stool for O/C');
$stoolForOc = TestType::find($stool);
$measures = TestTypeMeasure::where('test_type_id', $stool)->orderBy('measure_id', 'DESC')->get();
$table .= '<td colspan="5"><strong>Stool</strong></td>
</tr>
<tr>
<td>Total</td>
<td>' . $this->getGroupedTestCounts($stoolForOc, null, null, $from, $toPlusOne) . '</td>';
foreach ($ageRanges as $ageRange) {
$table .= '<td>' . $this->getGroupedTestCounts($stoolForOc, null, $ageRange, $from, $toPlusOne) . '</td>';
}
$table .= '</tr>';
foreach ($measures as $measure) {
$tMeasure = Measure::find($measure->measure_id);
foreach ($tMeasure->measureRanges as $range) {
if ($range->alphanumeric == 'O#C not seen') {
continue;
}
$table .= '<tr>
<td>' . $range->alphanumeric . '</td>';
$table .= '<td style="background-color: #CCCCCC;"></td>';
foreach ($ageRanges as $ageRange) {
$table .= '<td>' . $this->getTotalTestResults($tMeasure, null, $ageRange, $from, $toPlusOne, [$range->alphanumeric]) . '</td>';
}
$table .= '</tr>';
}
}
$table .= '<tr>
<td colspan="5"><strong>Lavages</strong></td>
</tr>
<tr>
<td>Total</td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
</tbody>
</table>
</div>
<!-- PARASITOLOGY -->
<!-- BACTERIOLOGY -->
<div class="col-sm-12">
<strong>BACTERIOLOGY</strong>
<div class="row">
<div class="col-sm-4">
<table class="table table-condensed report-table-border" style="padding-right:5px;">
<tbody style="text-align:right;">
<tr>
<td>Total examinations done</td>
<td></td>
</tr>';
foreach ($specTypeIds as $key) {
if (in_array(SpecimenType::find($key->spec_id)->name, ['Aspirate', 'Pleural Tap', 'Synovial Fluid', 'Sputum', 'Ascitic Tap', 'S***n', 'Skin'])) {
continue;
}
$totalCount = DB::select(DB::raw("select count(specimen_id) as per_spec_count from tests" . " join specimens on tests.specimen_id=specimens.id" . " join test_types on tests.test_type_id=test_types.id" . " where specimens.specimen_type_id=?" . " and test_types.test_category_id=?" . " and test_status_id in(?,?)" . " and tests.time_created BETWEEN ? and ?;"), [$key->spec_id, $labSecId, Test::COMPLETED, Test::VERIFIED, $from, $toPlusOne]);
$table .= '<tr>
<td>' . SpecimenType::find($key->spec_id)->name . '</td>
<td>' . $totalCount[0]->per_spec_count . '</td>
</tr>';
}
$table .= '</tr>
<td>Rectal swab</td>
<td>0</td>
</tr>
</tr>
<td>Water</td>
<td>0</td>
</tr>
</tr>
<td>Food</td>
<td>0</td>
</tr>
</tr>
<td>Other (specify)....</td>
<td></td>
</tr>
</tbody>
</table>
</div>
<div class="col-sm-8">
<table class="table table-condensed report-table-border">
<tbody>
<tr>
<td colspan="3">Drugs</td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
<tr>
<td colspan="3">Sensitivity (Total done)</td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
<tr>
<td colspan="3">Resistance per drug</td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
<tr>
<td rowspan="3">KOH Preparations</td>
<td>Fungi</td>
<td></td>
<td></td>
<td></td>
<td></td>
<td colspan="2">Others (specify)</td>
</tr>
<tr>
<td>Others</td>
<td></td>
<td></td>
<td></td>
<td></td>
<td>...</td>
<td></td>
</tr>
<tr>
<td>Total</td>
<td></td>
<td></td>
<td></td>
<td></td>
<td>...</td>
<td></td>
</tr>
</tbody>
</table>
<p>SPUTUM</p>
<table class="table table-condensed report-table-border">
<tbody>
<tr>
<td></td>
<td>Total</td>
<td>Positive</td>
</tr>
<tr>
<td>TB new suspects</td>
<td></td>
<td></td>
</tr>
<tr>
<td>Followup</td>
<td></td>
<td></td>
</tr>
<tr>
<td>TB smears</td>
<td></td>
<td></td>
</tr>
<tr>
<td>MDR</td>
<td></td>
<td></td>
</tr>
</tbody>
</table>
</div>
</div>
<table class="table table-condensed report-table-border">
<tbody>
<tr><td></td>';
foreach ($specimen_types as $spec) {
$table .= '<td>' . $spec . '</td>';
}
$table .= '</tr>';
foreach ($isolates as $isolate) {
$table .= '<tr>
<td>' . $isolate . '</td>';
foreach ($specimen_types as $spec) {
$table .= '<td>' . TestResult::microCounts($isolate, $spec, $from, $toPlusOne)[0]->total . '</td>';
}
$table .= '</tr>';
}
$table .= '<tr>
<td colspan="11">Specify species of each isolate</td>
</tr>
</tbody>
</table>
<div class="row">
<div class="col-sm-12">
<strong>HEMATOLOGY REPORT</strong>
<table class="table table-condensed report-table-border">
<thead>
<tr>
<th colspan="2">Type of examination</th>
<th>No. of Tests</th>
<th>Controls</th>
</tr>
</thead>
<tbody>
<tr>
<td colspan="2">Full blood count</td>
<td>' . $this->getGroupedTestCounts(TestType::find(TestType::getTestTypeIdByTestName('Full haemogram')), null, null, $from, $toPlusOne) . '</td>
<td></td>
</tr>
<tr>
<td colspan="2">Manual WBC counts</td>
<td></td>
<td></td>
</tr>
<tr>
<td colspan="2">Peripheral blood films</td>
<td></td>
<td></td>
</tr>
<tr>
<td colspan="2">Erythrocyte Sedimentation rate</td>
<td>' . $this->getGroupedTestCounts(TestType::find(TestType::getTestTypeIdByTestName('ESR')), null, null, $from, $toPlusOne) . '</td>
<td></td>
</tr>
<tr>
<td colspan="2">Sickling test</td>
<td>' . $this->getGroupedTestCounts(TestType::find(TestType::getTestTypeIdByTestName('Sickling test')), null, null, $from, $toPlusOne) . '</td>
<td></td>
</tr>
<tr>
<td colspan="2">HB electrophoresis</td>
<td></td>
<td></td>
</tr>
<tr>
<td colspan="2">G6PD screening</td>
<td></td>
<td></td>
</tr>
<tr>
<td colspan="2">Bleeding time</td>
<td>' . $this->getGroupedTestCounts(TestType::find(TestType::getTestTypeIdByTestName('Bleeding time test')), null, null, $from, $toPlusOne) . '</td>
<td></td>
</tr>
<tr>
<td colspan="2">Clotting time</td>
<td>' . $this->getGroupedTestCounts(TestType::find(TestType::getTestTypeIdByTestName('Clotting time test')), null, null, $from, $toPlusOne) . '</td>
<td></td>
</tr>
<tr>
<td colspan="2">Prothrombin test</td>
<td></td>
<td></td>
</tr>
<tr>
<td colspan="2">Partial prothrombin time</td>
<td></td>
<td></td>
</tr>
<tr>
<td colspan="2">Bone Marrow Aspirates</td>
<td></td>
<td style="background-color: #CCCCCC;"></td>
</tr>
<tr>
<td colspan="2">Reticulocyte counts</td>
<td></td>
<td style="background-color: #CCCCCC;"></td>
</tr>
<tr>
<td colspan="2">Others</td>
<td></td>
<td style="background-color: #CCCCCC;"></td>
</tr>
<tr>
<td rowspan="2">Haemoglobin</td>
<td>No. Tests</td>
<td><5</td>
<td>5<Hb<10</td>
</tr>
<tr>
<td>' . $this->getGroupedTestCounts(TestType::find(TestType::getTestTypeIdByTestName('HB')), null, null, $from, $toPlusOne) . '</td>
<td></td>
<td></td>
</tr>
<tr>
<td rowspan="2">CD4/CD8</td>
<td>No. Tests</td>
<td><200</td>
<td>200-350</td>
</tr>
<tr>
<td></td>
<td></td>
<td></td>
</tr>
<tr>
<td rowspan="2">CD4%</td>
<td>No. Tests</td>
<td><25%</td>
<td>>25%</td>
</tr>
<tr>
<td></td>
<td></td>
<td></td>
</tr>
<tr>
<td rowspan="2">Peripheral Blood Films</td>
<td>Parasites</td>
<td colspan="2">No. smears with inclusions</td>
</tr>
<tr>
<td></td>
<td></td>
<td colspan="2"></td>
</tr>
</tbody>
</table>
</div>
<div class="col-sm-12">
<strong>BLOOD GROUPING AND CROSSMATCH REPORT</strong>
<div class="row">
<div class="col-sm-6">
<table class="table table-condensed report-table-border">
<tbody>
<tr>
<td>Total groupings done</td>
<td>' . $this->getGroupedTestCounts(TestType::find(TestType::getTestTypeIdByTestName('GXM')), null, null, $from, $toPlusOne) . '</td>
</tr>
<tr>
<td>Blood units grouped</td>
<td>' . $this->getGroupedTestCounts(TestType::find(TestType::getTestTypeIdByTestName('Blood Grouping')), null, null, $from, $toPlusOne) . '</td>
</tr>
<tr>
<td>Total transfusion reactions</td>
<td></td>
</tr>
<tr>
<td>Blood cross matches</td>
<td>' . $this->getGroupedTestCounts(TestType::find(TestType::getTestTypeIdByTestName('Cross Match')), null, null, $from, $toPlusOne) . '</td>
</tr>
</tbody>
</table>
</div>
<div class="col-sm-6">
<strong>Blood safety</strong>
<table class="table table-condensed report-table-border">
<tbody>
<tr>
<td>Measure</td>
<td>Number</td>
</tr>
<tr>
<td>A. Blood units collected from regional blood transfusion centres</td>
<td></td>
</tr>
<tr>
<td>Blood units collected from other centres and screened at health facility</td>
<td></td>
</tr>
<tr>
<td>Blood units screened at health facility that are HIV positive</td>
<td></td>
</tr>
<tr>
<td>Blood units screened at health facility that are Hepatitis positive</td>
<td></td>
</tr>
<tr>
<td>Blood units positive for other infections</td>
<td></td>
</tr>
<tr>
<td>Blood units transfered</td>
<td></td>
</tr>
<tr>
<td rowspan="2">General remarks .............................</td>
<td rowspan="2"></td>
</tr>
</tbody>
</table>
</div>
</div>
</div>
</div>
</div>
<!-- BACTERIOLOGY -->
<!-- HISTOLOGY AND CYTOLOGY -->
<div class="col-sm-12">
<strong>HISTOLOGY AND CYTOLOGY REPORT</strong>
<table class="table table-condensed report-table-border">
<thead>
<tr>
<th rowspan="2"></th>
<th rowspan="2">Total</th>
<th rowspan="2">Normal</th>
<th rowspan="2">Infective</th>
<th colspan="2">Non-infective</th>
<th colspan="3">Positive findings</th>
</tr>
<tr>
<th>Benign</th>
<th>Malignant</th>
<th><5 yrs</th>
<th>5-14 yrs</th>
<th>>14 yrs</th>
</tr>
</thead>
<tbody>
<tr>
<td colspan="9">SMEARS</td>
</tr>
<tr>
<td>Pap Smear</td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
<tr>
<td>Tissue Impressions</td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
<tr>
<td colspan="9">TISSUE ASPIRATES (FNA)</td>
</tr>
<tr>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
<tr>
<td colspan="9">FLUID CYTOLOGY</td>
</tr>
<tr>
<td>Ascitic fluid</td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
<tr>
<td>CSF</td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
<tr>
<td>Pleural fluid</td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
<tr>
<td>Others</td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
<tr>
<td colspan="9">TISSUE HISTOLOGY</td>
</tr>
<tr>
<td>Cervix</td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
<tr>
<td>Prostrate</td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
<tr>
<td>Breast</td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
<tr>
<td>Ovarian cyst</td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
<tr>
<td>Fibroids</td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
<tr>
<td>Lymph nodes</td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
<tr>
<td>Others</td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
</tbody>
</table>
<strong>SEROLOGY REPORT</strong>
<table class="table table-condensed report-table-border">
<thead>
<tr>
<th rowspan="2">Serological test</th>
<th colspan="2">Total</th>
<th colspan="2"><5 yrs</th>
<th colspan="2">5-14 yrs</th>
<th colspan="2">>14 yrs</th>
</tr>
<tr>
<th>Tested</th>
<th>No. +ve</th>
<th>Tested</th>
<th>No. +ve</th>
<th>Tested</th>
<th>No. +ve</th>
<th>Tested</th>
<th>No. +ve</th>
</tr>
</thead>
<tbody>
<tr>
<td>Rapid Plasma Region</td>';
if (count(TestType::getPrevalenceCounts($from, $to, TestType::getTestTypeIdByTestName('VDRL'))) == 0) {
$table .= '<td>0</td>
<td>0</td>';
} else {
foreach (TestType::getPrevalenceCounts($from, $to, TestType::getTestTypeIdByTestName('VDRL')) as $count) {
if (count($count) == 0) {
$count->total = 0;
$count->positive = 0;
}
$table .= '<td>' . $count->total . '</td>
<td>' . $count->positive . '</td>';
}
}
foreach ($ageRanges as $ageRange) {
if (count(TestType::getPrevalenceCounts($from, $to, TestType::getTestTypeIdByTestName('VDRL'), $ageRange)) == 0) {
$table .= '<td>0</td>
<td>0</td>';
} else {
foreach (TestType::getPrevalenceCounts($from, $to, TestType::getTestTypeIdByTestName('VDRL'), $ageRange) as $count) {
$table .= '<td>' . $count->total . '</td>
<td>' . $count->positive . '</td>';
}
}
}
$table .= '</tr>
<tr>
<td>TPHA</td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
<tr>
<td>ASO Test</td>';
if (count(TestType::getPrevalenceCounts($from, $to, TestType::getTestTypeIdByTestName('Asot'))) == 0) {
$table .= '<td>0</td>
<td>0</td>';
} else {
foreach (TestType::getPrevalenceCounts($from, $to, TestType::getTestTypeIdByTestName('Asot')) as $count) {
if (count($count) == 0) {
$count->total = 0;
$count->positive = 0;
}
$table .= '<td>' . $count->total . '</td>
<td>' . $count->positive . '</td>';
}
}
foreach ($ageRanges as $ageRange) {
$data = TestType::getPrevalenceCounts($from, $to, TestType::getTestTypeIdByTestName('Asot'), $ageRange);
if (count($data) == 0) {
$table .= '<td>0</td>
<td>0</td>';
} else {
foreach ($data as $count) {
$table .= '<td>' . $count->total . '</td>
<td>' . $count->positive . '</td>';
}
}
}
$table .= '</tr>
<tr>
<td>HIV Test</td>';
if (count(TestType::getPrevalenceCounts($from, $to, TestType::getTestTypeIdByTestName('Rapid HIV test'))) == 0) {
$table .= '<td>0</td>
<td>0</td>';
} else {
foreach (TestType::getPrevalenceCounts($from, $to, TestType::getTestTypeIdByTestName('Rapid HIV test')) as $count) {
if (count($count) == 0) {
$count->total = 0;
$count->positive = 0;
}
$table .= '<td>' . $count->total . '</td>
<td>' . $count->positive . '</td>';
}
}
foreach ($ageRanges as $ageRange) {
$data = TestType::getPrevalenceCounts($from, $to, TestType::getTestTypeIdByTestName('Rapid HIV test'), $ageRange);
if (count($data) == 0) {
$table .= '<td>0</td>
<td>0</td>';
} else {
foreach ($data as $count) {
$table .= '<td>' . $count->total . '</td>
<td>' . $count->positive . '</td>';
}
}
}
$table .= '</tr>
<tr>
<td>Widal Test</td>';
if (count(TestType::getPrevalenceCounts($from, $to, TestType::getTestTypeIdByTestName('Widal'))) == 0) {
$table .= '<td>0</td>
<td>0</td>';
} else {
foreach (TestType::getPrevalenceCounts($from, $to, TestType::getTestTypeIdByTestName('Widal')) as $count) {
if (count($count) == 0) {
$count->total = 0;
$count->positive = 0;
}
$table .= '<td>' . $count->total . '</td>
<td>' . $count->positive . '</td>';
}
}
foreach ($ageRanges as $ageRange) {
$data = TestType::getPrevalenceCounts($from, $to, TestType::getTestTypeIdByTestName('Widal'), $ageRange);
if (count($data) == 0) {
$table .= '<td>0</td>
<td>0</td>';
} else {
foreach ($data as $count) {
$table .= '<td>' . $count->total . '</td>
<td>' . $count->positive . '</td>';
}
}
}
$table .= '</tr>
<tr>
<td>Brucella Test</td>';
if (count(TestType::getPrevalenceCounts($from, $to, TestType::getTestTypeIdByTestName('Brucella'))) == 0) {
$table .= '<td>0</td>
<td>0</td>';
} else {
foreach (TestType::getPrevalenceCounts($from, $to, TestType::getTestTypeIdByTestName('Brucella')) as $count) {
if (count($count) == 0) {
$count->total = 0;
$count->positive = 0;
}
$table .= '<td>' . $count->total . '</td>
<td>' . $count->positive . '</td>';
}
}
foreach ($ageRanges as $ageRange) {
$data = TestType::getPrevalenceCounts($from, $to, TestType::getTestTypeIdByTestName('Brucella'), $ageRange);
if (count($data) == 0) {
$table .= '<td>0</td>
<td>0</td>';
} else {
foreach ($data as $count) {
$table .= '<td>' . $count->total . '</td>
<td>' . $count->positive . '</td>';
}
}
}
$table .= '</tr>
<tr>
<td>Rheumatoid Factor Tests</td>';
if (count(TestType::getPrevalenceCounts($from, $to, TestType::getTestTypeIdByTestName('RF'))) == 0) {
$table .= '<td>0</td>
<td>0</td>';
} else {
foreach (TestType::getPrevalenceCounts($from, $to, TestType::getTestTypeIdByTestName('RF')) as $count) {
if (count($count) == 0) {
$count->total = 0;
$count->positive = 0;
}
$table .= '<td>' . $count->total . '</td>
<td>' . $count->positive . '</td>';
}
}
foreach ($ageRanges as $ageRange) {
$data = TestType::getPrevalenceCounts($from, $to, TestType::getTestTypeIdByTestName('RF'), $ageRange);
if (count($data) == 0) {
$table .= '<td>0</td>
<td>0</td>';
} else {
foreach ($data as $count) {
$table .= '<td>' . $count->total . '</td>
<td>' . $count->positive . '</td>';
}
}
}
$table .= '</tr>
<tr>
<td>Cryptococcal Antigen</td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
<tr>
<td>Helicobacter pylori test</td>';
if (count(TestType::getPrevalenceCounts($from, $to, TestType::getTestTypeIdByTestName('H pylori'))) == 0) {
$table .= '<td>0</td>
<td>0</td>';
} else {
foreach (TestType::getPrevalenceCounts($from, $to, TestType::getTestTypeIdByTestName('H pylori')) as $count) {
if (count($count) == 0) {
$count->total = 0;
$count->positive = 0;
}
$table .= '<td>' . $count->total . '</td>
<td>' . $count->positive . '</td>';
}
}
foreach ($ageRanges as $ageRange) {
$data = TestType::getPrevalenceCounts($from, $to, TestType::getTestTypeIdByTestName('H pylori'), $ageRange);
if (count($data) == 0) {
$table .= '<td>0</td>
<td>0</td>';
} else {
foreach ($data as $count) {
$table .= '<td>' . $count->total . '</td>
<td>' . $count->positive . '</td>';
}
}
}
$table .= '</tr>
<tr>
<td>Hepatitis A test</td>
<td>0</td>
<td>0</td>
<td>0</td>
<td>0</td>
<td>0</td>
<td>0</td>
<td>0</td>
<td>0</td>';
$table .= '</tr>
<tr>
<td>Hepatitis B test</td>';
if (count(TestType::getPrevalenceCounts($from, $to, TestType::getTestTypeIdByTestName('Hepatitis B'))) == 0) {
$table .= '<td>0</td>
<td>0</td>';
} else {
foreach (TestType::getPrevalenceCounts($from, $to, TestType::getTestTypeIdByTestName('Hepatitis B')) as $count) {
if (count($count) == 0) {
$count->total = 0;
$count->positive = 0;
}
$table .= '<td>' . $count->total . '</td>
<td>' . $count->positive . '</td>';
}
}
foreach ($ageRanges as $ageRange) {
$data = TestType::getPrevalenceCounts($from, $to, TestType::getTestTypeIdByTestName('Hepatitis B'), $ageRange);
if (count($data) == 0) {
$table .= '<td>0</td>
<td>0</td>';
} else {
foreach ($data as $count) {
$table .= '<td>' . $count->total . '</td>
<td>' . $count->positive . '</td>';
}
}
}
$table .= '</tr>
<tr>
<td>Hepatitis C test</td>';
if (count(TestType::getPrevalenceCounts($from, $to, TestType::getTestTypeIdByTestName('Hepatitis C'))) == 0) {
$table .= '<td>0</td>
<td>0</td>';
} else {
foreach (TestType::getPrevalenceCounts($from, $to, TestType::getTestTypeIdByTestName('Hepatitis C')) as $count) {
if (count($count) == 0) {
$count->total = 0;
$count->positive = 0;
}
$table .= '<td>' . $count->total . '</td>
<td>' . $count->positive . '</td>';
}
}
foreach ($ageRanges as $ageRange) {
$data = TestType::getPrevalenceCounts($from, $to, TestType::getTestTypeIdByTestName('Hepatitis C'), $ageRange);
if (count($data) == 0) {
$table .= '<td>0</td>
<td>0</td>';
} else {
foreach ($data as $count) {
$table .= '<td>' . $count->total . '</td>
<td>' . $count->positive . '</td>';
}
}
}
$table .= '</tr>
<tr>
<td>Viral Load</td>';
if (count(TestType::getPrevalenceCounts($from, $to, TestType::getTestTypeIdByTestName('Viral load'))) == 0) {
$table .= '<td>0</td>
<td style="background-color: #CCCCCC;"></td>';
} else {
foreach (TestType::getPrevalenceCounts($from, $to, TestType::getTestTypeIdByTestName('Viral load')) as $count) {
if (count($count) == 0) {
$count->total = 0;
$count->positive = 0;
}
$table .= '<td>' . $count->total . '</td>
<td style="background-color: #CCCCCC;"></td>';
}
}
foreach ($ageRanges as $ageRange) {
$data = TestType::getPrevalenceCounts($from, $to, TestType::getTestTypeIdByTestName('Viral load'), $ageRange);
if (count($data) == 0) {
$table .= '<td>0</td>
<td style="background-color: #CCCCCC;"></td>';
} else {
foreach ($data as $count) {
$table .= '<td>' . $count->total . '</td>
<td style="background-color: #CCCCCC;"></td>';
}
}
}
$table .= '</tr>
<tr>
<td>Formal Gel Test</td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
<tr>
<td>Other Tests</td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
<td></td>
</tr>
</tbody>
</table>
<br />
<table class="table table-condensed report-table-border">
<thead>
<tr>
<th>Dried Blood Spots</th>
<th>Tested</th>
<th># +ve</th>
<th>Discrepant</th>
</tr>
</thead>
<tbody>
<tr>
<td>Early Infant Diagnosis of HIV</td>';
if (count(TestType::getPrevalenceCounts($from, $to, TestType::getTestTypeIdByTestName('eid of hiv'))) == 0) {
$table .= '<td>0</td>
<td>0</td>';
} else {
foreach (TestType::getPrevalenceCounts($from, $to, TestType::getTestTypeIdByTestName('eid of hiv')) as $count) {
if (count($count) == 0) {
$count->total = 0;
$count->positive = 0;
}
$table .= '<td>' . $count->total . '</td>
<td>' . $count->positive . '</td>';
}
}
$table .= '<td></td>
</tr>
<tr>
<td>Quality Assurance</td>
<td></td>
<td></td>
<td></td>
</tr>
<tr>
<td>Discordant couples</td>
<td></td>
<td></td>
<td></td>
</tr>
<tr>
<td>Others</td>
<td></td>
<td></td>
<td></td>
</tr>
</tbody>
</table>
<p><strong>Specimen referral to higher levels</strong></p>
<table class="table table-condensed report-table-border">
<thead>
<tr>
<th>Specimen</th>
<th>No</th>
<th>Sent to</th>
<th>No. of Reports/results received</th>
</tr>
</thead>
<tbody>';
if ($referredSpecimens) {
foreach ($referredSpecimens as $referredSpecimen) {
$table .= '<tr>
<td>' . $referredSpecimen->spec . '</td>
<td>' . $referredSpecimen->tot . '</td>
<td>' . $referredSpecimen->facility . '</td>
<td></td>
</tr>';
}
} else {
$table .= '<tr>
<td colspan="4">' . trans('messages.no-records-found') . '</td>
</tr>';
}
$table .= '</tbody>
</table>
</div>
<!-- HISTOLOGY AND CYTOLOGY -->';
if (Input::has('excel')) {
$date = date("Ymdhi");
$fileName = "MOH706_" . $date . ".xls";
$headers = array("Content-type" => "text/html", "Content-Disposition" => "attachment;Filename=" . $fileName);
$content = $table;
return Response::make($content, 200, $headers);
} else {
//return View::make('reports.moh.706');
return View::make('reports.moh.index')->with('table', $table)->with('from', $from)->with('end', $end);
}
}
/**
* Shows question title an description
*
* @param string $feedback_type
* @param int $counter
* @param float $score
*/
function return_header($feedback_type = null, $counter = null, $score = null)
{
$counter_label = '';
if (!empty($counter)) {
$counter_label = intval($counter);
}
$score_label = get_lang('Wrong');
$class = 'error';
if ($score['pass'] == true) {
$score_label = get_lang('Correct');
$class = 'success';
}
if ($this->type == FREE_ANSWER || $this->type == ORAL_EXPRESSION) {
$score['revised'] = isset($score['revised']) ? $score['revised'] : false;
if ($score['revised'] == true) {
$score_label = get_lang('Revised');
$class = '';
} else {
$score_label = get_lang('NotRevised');
$class = 'error';
}
}
$question_title = $this->question;
// display question category, if any
$header = TestCategory::returnCategoryAndTitle($this->id);
$show_media = null;
if ($show_media) {
$header .= $this->show_media_content();
}
$header .= Display::page_subheader2($counter_label . ". " . $question_title);
$header .= Display::div("<div class=\"rib rib-{$class}\"><h3>{$score_label}</h3></div> <h4>{$score['result']}</h4>", array('class' => 'ribbon'));
$header .= Display::div($this->description, array('id' => 'question_description'));
return $header;
}
/**
* @param int $courseId
* @param int $sessionId
* @return string
*/
public function displayCategories($courseId, $sessionId = 0)
{
$categories = $this->getCategories($courseId, $sessionId);
$html = '';
foreach ($categories as $category) {
$tmpobj = new TestCategory($category['id']);
$nb_question = $tmpobj->getCategoryQuestionsNumber();
$rowname = self::protectJSDialogQuote($category['title']);
$nb_question_label = $nb_question == 1 ? $nb_question . ' ' . get_lang('Question') : $nb_question . ' ' . get_lang('Questions');
//$html .= '<div class="sectiontitle" id="id_cat' . $category['id'] . '">';
$content = "<span style='float:right'>" . $nb_question_label . "</span>";
$content .= '<div class="sectioncomment">';
$content .= $category['description'];
$content .= '</div>';
$links = '<a href="' . api_get_self() . '?action=editcategory&category_id=' . $category['id'] . '">' . Display::return_icon('edit.png', get_lang('Edit'), array(), ICON_SIZE_SMALL) . '</a>';
$links .= ' <a href="' . api_get_self() . '?action=deletecategory&category_id=' . $category['id'] . '" ';
$links .= 'onclick="return confirmDelete(\'' . self::protectJSDialogQuote(get_lang('DeleteCategoryAreYouSure') . '[' . $rowname) . '] ?\', \'id_cat' . $category['id'] . '\');">';
$links .= Display::return_icon('delete.png', get_lang('Delete'), array(), ICON_SIZE_SMALL) . '</a>';
$html .= Display::panel($content, $category['title'] . $links);
}
return $html;
}
/**
* Build the test category
* @param int $session_id Internal session ID
* @param int $courseId Internal course ID
* @param bool $with_base_content Whether to include content from the course without session or not
* @param array $id_list If you want to restrict the structure to only the given IDs
* @todo add course session
*/
public function build_test_category($session_id = 0, $courseId = 0, $with_base_content = false, $id_list = array())
{
// get all test category in course
$tab_test_categories_id = TestCategory::getCategoryListInfo("id", $courseId);
foreach ($tab_test_categories_id as $test_category_id) {
$test_category = new TestCategory($test_category_id);
$copy_course_test_category = new CourseCopyTestcategory($test_category_id, $test_category->name, $test_category->description);
$this->course->add_resource($copy_course_test_category);
}
}
/**
* form to add a category
* @todo move to TestCategory.class.php
* @param string $action
*/
function add_category_form($action)
{
$action = Security::remove_XSS($action);
// initiate the object
$form = new FormValidator('note', 'post', api_get_self() . '?action=' . $action);
// Setting the form elements
$form->addElement('header', get_lang('AddACategory'));
$form->addElement('text', 'category_name', get_lang('CategoryName'), array('size' => '95'));
$form->addHtmlEditor('category_description', get_lang('CategoryDescription'), false, false, array('ToolbarSet' => 'test_category', 'Height' => '200'));
$form->addButtonCreate(get_lang('AddTestCategory'), 'SubmitNote');
// setting the rules
$form->addRule('category_name', get_lang('ThisFieldIsRequired'), 'required');
// The validation or display
if ($form->validate()) {
$check = Security::check_token('post');
if ($check) {
$values = $form->exportValues();
$v_name = Security::remove_XSS($values['category_name'], COURSEMANAGER);
$v_description = Security::remove_XSS($values['category_description'], COURSEMANAGER);
$objcat = new TestCategory(0, $v_name, $v_description);
if ($objcat->addCategoryInBDD()) {
Display::display_confirmation_message(get_lang('AddCategoryDone'));
} else {
Display::display_confirmation_message(get_lang('AddCategoryNameAlreadyExists'));
}
}
Security::clear_token();
} else {
display_goback();
$token = Security::get_token();
$form->addElement('hidden', 'sec_token');
$form->setConstants(array('sec_token' => $token));
$form->display();
}
}
/**
* Display the exercise results
* @param Exercise $objExercise
* @param int $exe_id
* @param bool $save_user_result save users results (true) or just show the results (false)
*/
public static function display_question_list_by_attempt($objExercise, $exe_id, $save_user_result = false)
{
global $origin;
// Getting attempt info
$exercise_stat_info = $objExercise->get_stat_track_exercise_info_by_exe_id($exe_id);
// Getting question list
$question_list = array();
if (!empty($exercise_stat_info['data_tracking'])) {
$question_list = explode(',', $exercise_stat_info['data_tracking']);
} else {
// Try getting the question list only if save result is off
if ($save_user_result == false) {
$question_list = $objExercise->get_validated_question_list();
}
}
$counter = 1;
$total_score = $total_weight = 0;
$exercise_content = null;
// Hide results
$show_results = false;
$show_only_score = false;
if ($objExercise->results_disabled == RESULT_DISABLE_SHOW_SCORE_AND_EXPECTED_ANSWERS) {
$show_results = true;
}
if (in_array($objExercise->results_disabled, array(RESULT_DISABLE_SHOW_SCORE_ONLY, RESULT_DISABLE_SHOW_FINAL_SCORE_ONLY_WITH_CATEGORIES))) {
$show_only_score = true;
}
// Not display expected answer, but score, and feedback
$show_all_but_expected_answer = false;
if ($objExercise->results_disabled == RESULT_DISABLE_SHOW_SCORE_ONLY && $objExercise->feedback_type == EXERCISE_FEEDBACK_TYPE_END) {
$show_all_but_expected_answer = true;
$show_results = true;
$show_only_score = false;
}
if ($show_results || $show_only_score) {
$user_info = api_get_user_info($exercise_stat_info['exe_user_id']);
//Shows exercise header
echo $objExercise->show_exercise_result_header($user_info, api_convert_and_format_date($exercise_stat_info['start_date'], DATE_TIME_FORMAT_LONG), $exercise_stat_info['duration'], $exercise_stat_info['user_ip']);
}
// Display text when test is finished #4074 and for LP #4227
$end_of_message = $objExercise->selectTextWhenFinished();
if (!empty($end_of_message)) {
Display::display_normal_message($end_of_message, false);
echo "<div class='clear'> </div>";
}
$question_list_answers = array();
$media_list = array();
$category_list = array();
// Loop over all question to show results for each of them, one by one
if (!empty($question_list)) {
foreach ($question_list as $questionId) {
// creates a temporary Question object
$objQuestionTmp = Question::read($questionId);
// This variable came from exercise_submit_modal.php
ob_start();
// We're inside *one* question. Go through each possible answer for this question
$result = $objExercise->manage_answer($exercise_stat_info['exe_id'], $questionId, null, 'exercise_result', array(), $save_user_result, true, $show_results, $objExercise->selectPropagateNeg(), array());
if (empty($result)) {
continue;
}
// In case of global score, make sure the calculated total score is integer
/*if (!is_int($result['score'])) {
$result['score'] = round($result['score']);
}*/
$total_score += $result['score'];
$total_weight += $result['weight'];
$question_list_answers[] = array('question' => $result['open_question'], 'answer' => $result['open_answer'], 'answer_type' => $result['answer_type']);
$my_total_score = $result['score'];
$my_total_weight = $result['weight'];
// Category report
$category_was_added_for_this_test = false;
if (isset($objQuestionTmp->category) && !empty($objQuestionTmp->category)) {
if (!isset($category_list[$objQuestionTmp->category]['score'])) {
$category_list[$objQuestionTmp->category]['score'] = 0;
}
if (!isset($category_list[$objQuestionTmp->category]['total'])) {
$category_list[$objQuestionTmp->category]['total'] = 0;
}
$category_list[$objQuestionTmp->category]['score'] += $my_total_score;
$category_list[$objQuestionTmp->category]['total'] += $my_total_weight;
$category_was_added_for_this_test = true;
}
if (isset($objQuestionTmp->category_list) && !empty($objQuestionTmp->category_list)) {
foreach ($objQuestionTmp->category_list as $category_id) {
$category_list[$category_id]['score'] += $my_total_score;
$category_list[$category_id]['total'] += $my_total_weight;
$category_was_added_for_this_test = true;
}
}
// No category for this question!
if ($category_was_added_for_this_test == false) {
if (!isset($category_list['none']['score'])) {
$category_list['none']['score'] = 0;
}
if (!isset($category_list['none']['total'])) {
$category_list['none']['total'] = 0;
}
$category_list['none']['score'] += $my_total_score;
$category_list['none']['total'] += $my_total_weight;
}
if ($objExercise->selectPropagateNeg() == 0 && $my_total_score < 0) {
$my_total_score = 0;
}
$comnt = null;
if ($show_results) {
$comnt = Event::get_comments($exe_id, $questionId);
if (!empty($comnt)) {
echo '<b>' . get_lang('Feedback') . '</b>';
echo '<div id="question_feedback">' . $comnt . '</div>';
}
}
if ($show_results) {
$score = array('result' => get_lang('Score') . " : " . self::show_score($my_total_score, $my_total_weight, false, true), 'pass' => $my_total_score >= $my_total_weight ? true : false, 'score' => $my_total_score, 'weight' => $my_total_weight, 'comments' => $comnt);
} else {
$score = array();
}
$contents = ob_get_clean();
$question_content = '';
if ($show_results) {
$question_content = '<div class="question_row_answer">';
$show_media = false;
/*if ($objQuestionTmp->parent_id != 0 && !in_array($objQuestionTmp->parent_id, $media_list)) {
$show_media = true;
$media_list[] = $objQuestionTmp->parent_id;
}*/
//Shows question title an description
$question_content .= $objQuestionTmp->return_header(null, $counter, $score);
}
$counter++;
$question_content .= $contents;
if ($show_results) {
$question_content .= '</div>';
}
$exercise_content .= $question_content;
}
// end foreach() block that loops over all questions
}
$total_score_text = null;
if ($origin != 'learnpath') {
if ($show_results || $show_only_score) {
$total_score_text .= '<div class="question_row_score">';
$total_score_text .= self::get_question_ribbon($objExercise, $total_score, $total_weight, true);
$total_score_text .= '</div>';
}
}
if (!empty($category_list) && ($show_results || $show_only_score)) {
//Adding total
$category_list['total'] = array('score' => $total_score, 'total' => $total_weight);
echo TestCategory::get_stats_table_by_attempt($objExercise->id, $category_list);
}
if ($show_all_but_expected_answer) {
$exercise_content .= "<div class='normal-message'>" . get_lang("ExerciseWithFeedbackWithoutCorrectionComment") . "</div>";
}
// Remove audio auto play from questions on results page - refs BT#7939
$exercise_content = preg_replace(['/autoplay[\\=\\".+\\"]+/', '/autostart[\\=\\".+\\"]+/'], '', $exercise_content);
echo $total_score_text;
echo $exercise_content;
if (!$show_only_score) {
echo $total_score_text;
}
if ($save_user_result) {
// Tracking of results
$learnpath_id = $exercise_stat_info['orig_lp_id'];
$learnpath_item_id = $exercise_stat_info['orig_lp_item_id'];
$learnpath_item_view_id = $exercise_stat_info['orig_lp_item_view_id'];
if (api_is_allowed_to_session_edit()) {
Event::update_event_exercice($exercise_stat_info['exe_id'], $objExercise->selectId(), $total_score, $total_weight, api_get_session_id(), $learnpath_id, $learnpath_item_id, $learnpath_item_view_id, $exercise_stat_info['exe_duration'], $question_list, '', array());
}
// Send notification ..
if (!api_is_allowed_to_edit(null, true) && !api_is_excluded_user_type()) {
if (api_get_course_setting('email_alert_manager_on_new_quiz') == 1) {
$objExercise->send_mail_notification_for_exam($question_list_answers, $origin, $exe_id);
}
$objExercise->send_notification_for_open_questions($question_list_answers, $origin, $exe_id);
$objExercise->send_notification_for_oral_questions($question_list_answers, $origin, $exe_id);
}
}
}
/**
* Remove the specified resource from storage (soft delete).
*
* @param int $id
* @return Response
*/
public function delete($id)
{
//Soft delete the test category
$testcategory = TestCategory::find($id);
$testCategoryInUse = TestType::where('test_category_id', '=', $id)->first();
if (empty($testCategoryInUse)) {
// The test category is not in use
$testcategory->delete();
} else {
// The test category is in use
$url = Session::get('SOURCE_URL');
return Redirect::to($url)->with('message', trans('messages.failure-test-category-in-use'));
}
// redirect
$url = Session::get('SOURCE_URL');
return Redirect::to($url)->with('message', trans('messages.success-deleting-test-category'));
}
/**
* Calculate the max_score of the quiz, depending of question inside, and quiz advanced option
*/
public function get_max_score()
{
$out_max_score = 0;
$tab_question_list = $this->selectQuestionList(true);
// list of question's id !!! the array key start at 1 !!!
// test is randomQuestions - see field random of test
if ($this->random > 0 && $this->randomByCat == 0) {
$nb_random_questions = $this->random;
$tab_questions_score = array();
for ($i = 1; $i <= count($tab_question_list); $i++) {
$tmpobj_question = Question::read($tab_question_list[$i]);
$tab_questions_score[] = $tmpobj_question->weighting;
}
rsort($tab_questions_score);
// add the first $nb_random_questions value of score array to get max_score
for ($i = 0; $i < min($nb_random_questions, count($tab_questions_score)); $i++) {
$out_max_score += $tab_questions_score[$i];
}
} else {
if ($this->random > 0 && $this->randomByCat > 0) {
$nb_random_questions = $this->random;
$tab_categories_scores = array();
for ($i = 1; $i <= count($tab_question_list); $i++) {
$question_category_id = TestCategory::getCategoryForQuestion($tab_question_list[$i]);
if (!is_array($tab_categories_scores[$question_category_id])) {
$tab_categories_scores[$question_category_id] = array();
}
$tmpobj_question = Question::read($tab_question_list[$i]);
$tab_categories_scores[$question_category_id][] = $tmpobj_question->weighting;
}
// here we've got an array with first key, the category_id, second key, score of question for this cat
while (list($key, $tab_scores) = each($tab_categories_scores)) {
rsort($tab_scores);
for ($i = 0; $i < min($nb_random_questions, count($tab_scores)); $i++) {
$out_max_score += $tab_scores[$i];
}
}
} else {
for ($i = 1; $i <= count($tab_question_list); $i++) {
$tmpobj_question = Question::read($tab_question_list[$i]);
$out_max_score += $tmpobj_question->weighting;
}
}
}
return $out_max_score;
}
/**
* Handles a given Excel spreadsheets as in the template provided
*/
function lp_upload_quiz_action_handling()
{
global $debug;
$_course = api_get_course_info();
$courseId = $_course['real_id'];
if (!isset($_POST['submit_upload_quiz'])) {
return;
}
// Get the extension of the document.
$path_info = pathinfo($_FILES['user_upload_quiz']['name']);
// Check if the document is an Excel document
if ($path_info['extension'] != 'xls') {
return;
}
// Read the Excel document
$data = new Spreadsheet_Excel_Reader();
// Set output Encoding.
$data->setOutputEncoding(api_get_system_encoding());
// Reading the xls document.
$data->read($_FILES['user_upload_quiz']['tmp_name']);
$correctScore = isset($_POST['correct_score']) ? $_POST['correct_score'] : null;
$incorrectScore = isset($_POST['incorrect_score']) ? $_POST['incorrect_score'] : null;
$useCustomScore = isset($_POST['user_custom_score']) ? true : false;
$propagateNegative = 0;
if ($useCustomScore && !empty($incorrectScore)) {
if ($incorrectScore < 0) {
$propagateNegative = 1;
}
}
// Variables
$quiz_index = 0;
$question_title_index = array();
$question_name_index_init = array();
$question_name_index_end = array();
$score_index = array();
$feedback_true_index = array();
$feedback_false_index = array();
$number_questions = 0;
$question_description_index = array();
$noNegativeScoreIndex = array();
$questionTypeList = array();
$questionTypeIndex = array();
$categoryList = array();
// Reading all the first column items sequentially to create breakpoints
for ($i = 1; $i <= $data->sheets[0]['numRows']; $i++) {
if ($data->sheets[0]['cells'][$i][1] == 'Quiz' && $i == 1) {
$quiz_index = $i;
// Quiz title position, only occurs once
} elseif ($data->sheets[0]['cells'][$i][1] == 'Question') {
$question_title_index[] = $i;
// Question title position line
$question_name_index_init[] = $i + 1;
// Questions name 1st position line
$number_questions++;
} elseif ($data->sheets[0]['cells'][$i][1] == 'Score') {
$question_name_index_end[] = $i - 1;
// Question name position
$score_index[] = $i;
// Question score position
} elseif ($data->sheets[0]['cells'][$i][1] == 'FeedbackTrue') {
$feedback_true_index[] = $i;
// FeedbackTrue position (line)
} elseif ($data->sheets[0]['cells'][$i][1] == 'FeedbackFalse') {
$feedback_false_index[] = $i;
// FeedbackFalse position (line)
} elseif ($data->sheets[0]['cells'][$i][1] == 'EnrichQuestion') {
$question_description_index[] = $i;
} elseif ($data->sheets[0]['cells'][$i][1] == 'NoNegativeScore') {
$noNegativeScoreIndex[] = $i;
} elseif ($data->sheets[0]['cells'][$i][1] == 'QuestionType') {
$questionTypeIndex[] = $i;
}
}
// Variables
$quiz = array();
$question = array();
$new_answer = array();
$score_list = array();
$feedback_true_list = array();
$feedback_false_list = array();
$question_description = array();
$noNegativeScoreList = array();
// Getting questions.
$k = $z = $q = $l = $m = $n = 0;
for ($i = 1; $i <= $data->sheets[0]['numRows']; $i++) {
if (is_array($data->sheets[0]['cells'][$i])) {
$column_data = $data->sheets[0]['cells'][$i];
// Fill all column with data to have a full array
for ($x = 1; $x <= $data->sheets[0]['numCols']; $x++) {
if (empty($column_data[$x])) {
$data->sheets[0]['cells'][$i][$x] = '';
}
}
// Array filled with data
$column_data = $data->sheets[0]['cells'][$i];
} else {
$column_data = '';
}
// Fill quiz data
if ($quiz_index == $i) {
// The title always in the first position
$quiz = $column_data;
} elseif (in_array($i, $question_title_index)) {
//a complete line where 1st column is 'Question'
$question[$k] = $column_data;
for ($counter = 0; $counter < 12; $counter++) {
$myData = isset($data->sheets[0]['cells'][$i + $counter]) ? $data->sheets[0]['cells'][$i + $counter] : null;
if (isset($myData[1]) && $myData[1] == 'QuestionType') {
$questionTypeList[$k] = $myData[3];
}
if (isset($myData[1]) && $myData[1] == 'Category') {
$categoryList[$k] = $myData[2];
}
}
if (!isset($questionTypeList[$k])) {
$questionTypeList[$k] = null;
}
$k++;
} elseif (in_array($i, $score_index)) {
//a complete line where 1st column is 'Score'
$score_list[$z] = $column_data;
$z++;
} elseif (in_array($i, $feedback_true_index)) {
//a complete line where 1st column is 'FeedbackTrue'
$feedback_true_list[$q] = $column_data;
$q++;
} elseif (in_array($i, $feedback_false_index)) {
//a complete line where 1st column is 'FeedbackFalse' for wrong answers
$feedback_false_list[$l] = $column_data;
$l++;
} elseif (in_array($i, $question_description_index)) {
//a complete line where 1st column is 'EnrichQuestion'
$question_description[$m] = $column_data;
$m++;
} elseif (in_array($i, $noNegativeScoreIndex)) {
//a complete line where 1st column is 'NoNegativeScore'
$noNegativeScoreList[$z - 1] = $column_data;
}
}
// Get answers
for ($i = 0; $i < count($question_name_index_init); $i++) {
for ($j = $question_name_index_init[$i]; $j <= $question_name_index_end[$i]; $j++) {
if (is_array($data->sheets[0]['cells'][$j])) {
$column_data = $data->sheets[0]['cells'][$j];
// Fill all column with data
for ($x = 1; $x <= $data->sheets[0]['numCols']; $x++) {
if (empty($column_data[$x])) {
$data->sheets[0]['cells'][$j][$x] = '';
}
}
$column_data = $data->sheets[0]['cells'][$j];
// Array filled of data
if (is_array($column_data) && count($column_data) > 0) {
$new_answer[$i][$j] = $column_data;
}
}
}
}
// Quiz title.
$quiz_title = $quiz[2];
if ($quiz_title != '') {
// Variables
$type = 2;
$random = $active = $results = $max_attempt = $expired_time = 0;
// Make sure feedback is enabled (3 to disable), otherwise the fields
// added to the XLS are not shown, which is confusing
$feedback = 0;
// Quiz object
$exercise = new Exercise();
//
$quiz_id = $exercise->createExercise($quiz_title, $expired_time, $type, $random, $active, $results, $max_attempt, $feedback, $propagateNegative);
if ($quiz_id) {
// insert into the item_property table
api_item_property_update($_course, TOOL_QUIZ, $quiz_id, 'QuizAdded', api_get_user_id());
// Import questions.
for ($i = 0; $i < $number_questions; $i++) {
// Question name
$question_title = $question[$i][2];
$description = isset($question_description[$i][2]) ? $question_description[$i][2] : '';
$categoryId = null;
if (isset($categoryList[$i]) && !empty($categoryList[$i])) {
$categoryName = $categoryList[$i];
$categoryId = TestCategory::get_category_id_for_title($categoryName, $courseId);
if (empty($categoryId)) {
$category = new TestCategory(null, $categoryName, '');
$categoryId = $category->addCategoryInBDD();
}
}
$question_description_text = "<p></p>";
if (!empty($description)) {
// Question description.
$question_description_text = "<p>" . $description . "</p>";
}
// Unique answers are the only question types available for now
// through xls-format import
$answerList = isset($new_answer[$i]) ? $new_answer[$i] : '';
$question_id = null;
if (isset($questionTypeList[$i])) {
$detectQuestionType = intval($questionTypeList[$i]);
} else {
$detectQuestionType = detectQuestionType($answerList, $score_list);
}
/** @var Question $answer */
switch ($detectQuestionType) {
case FREE_ANSWER:
$answer = new FreeAnswer();
break;
case GLOBAL_MULTIPLE_ANSWER:
$answer = new GlobalMultipleAnswer();
break;
case MULTIPLE_ANSWER:
$answer = new MultipleAnswer();
break;
case FILL_IN_BLANKS:
$answer = new FillBlanks();
$question_description_text = '';
break;
case MATCHING:
$answer = new Matching();
break;
case UNIQUE_ANSWER:
default:
$answer = new UniqueAnswer();
break;
}
if ($question_title != '') {
$question_id = $answer->create_question($quiz_id, $question_title, $question_description_text, 0, $answer->type);
if (!empty($categoryId)) {
TestCategory::add_category_for_question_id($categoryId, $question_id, $courseId);
}
}
switch ($detectQuestionType) {
case GLOBAL_MULTIPLE_ANSWER:
case MULTIPLE_ANSWER:
case UNIQUE_ANSWER:
$total = 0;
if (is_array($answerList) && !empty($question_id)) {
$id = 1;
$globalScore = null;
$objAnswer = new Answer($question_id, $courseId);
$globalScore = $score_list[$i][3];
// Calculate the number of correct answers to divide the
// score between them when importing from CSV
$numberRightAnswers = 0;
foreach ($answerList as $answer_data) {
if (strtolower($answer_data[3]) == 'x') {
$numberRightAnswers++;
}
}
foreach ($answerList as $answer_data) {
$answerValue = $answer_data[2];
$correct = 0;
$score = 0;
if (strtolower($answer_data[3]) == 'x') {
$correct = 1;
$score = $score_list[$i][3];
$comment = $feedback_true_list[$i][2];
} else {
$comment = $feedback_false_list[$i][2];
$floatVal = (double) $answer_data[3];
if (is_numeric($floatVal)) {
$score = $answer_data[3];
}
}
if ($useCustomScore) {
if ($correct) {
$score = $correctScore;
} else {
$score = $incorrectScore;
}
}
// Fixing scores:
switch ($detectQuestionType) {
case GLOBAL_MULTIPLE_ANSWER:
if (isset($noNegativeScoreList[$i][3])) {
if (!(strtolower($noNegativeScoreList[$i][3]) == 'x') && !$correct) {
$score = $score_list[$i][3] * -1;
}
} else {
$score = $score_list[$i][3] * -1;
}
$score /= $numberRightAnswers;
break;
case UNIQUE_ANSWER:
break;
case MULTIPLE_ANSWER:
if (!$correct) {
//$total = $total - $score;
}
break;
}
$objAnswer->createAnswer($answerValue, $correct, $comment, $score, $id);
$total += $score;
$id++;
}
$objAnswer->save();
$questionObj = Question::read($question_id, $courseId);
switch ($detectQuestionType) {
case GLOBAL_MULTIPLE_ANSWER:
$questionObj->updateWeighting($globalScore);
break;
case UNIQUE_ANSWER:
case MULTIPLE_ANSWER:
default:
$questionObj->updateWeighting($total);
break;
}
$questionObj->save();
}
break;
case FREE_ANSWER:
$questionObj = Question::read($question_id, $courseId);
$globalScore = $score_list[$i][3];
$questionObj->updateWeighting($globalScore);
$questionObj->save();
break;
case FILL_IN_BLANKS:
$scoreList = array();
$size = array();
$globalScore = 0;
foreach ($answerList as $data) {
$score = isset($data[3]) ? $data[3] : 0;
$globalScore += $score;
$scoreList[] = $score;
$size[] = 200;
}
$scoreToString = implode(',', $scoreList);
$sizeToString = implode(',', $size);
//<p>Texte long avec les [mots] à [remplir] mis entre [crochets]</p>::10,10,10:200.36363999999998,200,200:0@'
$answerValue = $description . '::' . $scoreToString . ':' . $sizeToString . ':0@';
$objAnswer = new Answer($question_id, $courseId);
$objAnswer->createAnswer($answerValue, '', '', $globalScore, 1);
$objAnswer->save();
$questionObj = Question::read($question_id, $courseId);
$questionObj->updateWeighting($globalScore);
$questionObj->save();
break;
case MATCHING:
$globalScore = $score_list[$i][3];
$position = 1;
$objAnswer = new Answer($question_id, $courseId);
foreach ($answerList as $data) {
$option = isset($data[3]) ? $data[3] : '';
$objAnswer->createAnswer($option, 0, '', 0, $position);
$position++;
}
$counter = 1;
foreach ($answerList as $data) {
$value = isset($data[2]) ? $data[2] : '';
$position++;
$objAnswer->createAnswer($value, $counter, ' ', $globalScore, $position);
$counter++;
}
$objAnswer->save();
$questionObj = Question::read($question_id, $courseId);
$questionObj->updateWeighting($globalScore);
$questionObj->save();
break;
}
}
}
$lpFromSession = Session::read('lpobject');
if (isset($lpFromSession)) {
if ($debug > 0) {
error_log('New LP - SESSION[lpobject] is defined', 0);
}
$oLP = unserialize($lpFromSession);
if (is_object($oLP)) {
if ($debug > 0) {
error_log('New LP - oLP is object', 0);
}
if (empty($oLP->cc) or $oLP->cc != api_get_course_id()) {
if ($debug > 0) {
error_log('New LP - Course has changed, discard lp object', 0);
}
$oLP = null;
Session::erase('oLP');
Session::erase('lpobject');
} else {
Session::write('oLP', $oLP);
}
}
}
/** @var learnpath $lpFromSession */
$lpFromSession = Session::read('oLP');
if (isset($lpFromSession) && isset($_GET['lp_id'])) {
$previous = $lpFromSession->select_previous_item_id();
$parent = 0;
// Add a Quiz as Lp Item
$lpFromSession->add_item($parent, $previous, TOOL_QUIZ, $quiz_id, $quiz_title, '');
// Redirect to home page for add more content
header('location: ../newscorm/lp_controller.php?' . api_get_cidreq() . '&action=add_item&type=step&lp_id=' . intval($_GET['lp_id']));
exit;
} else {
echo '<script>window.location.href = "' . api_get_path(WEB_CODE_PATH) . 'exercice/admin.php?' . api_get_cidReq() . '&exerciseId=' . $quiz_id . '&session_id=' . api_get_session_id() . '"</script>';
}
}
}
if ($objExercise->edit_exercise_in_lp == true) {
$delete_link = '<a id="delete_' . $id . '" class="opener" href="' . api_get_self() . '?' . api_get_cidreq() . '&exerciseId=' . $exerciseId . '&deleteQuestion=' . $id . '" >' . Display::return_icon('delete.png', get_lang('RemoveFromTest'), array(), ICON_SIZE_SMALL) . '</a>';
}
$edit_link = Display::tag('div', $edit_link, array('style' => 'float:left; padding:0px; margin:0px'));
$clone_link = Display::tag('div', $clone_link, array('style' => 'float:left; padding:0px; margin:0px'));
$delete_link = Display::tag('div', $delete_link, array('style' => 'float:left; padding:0px; margin:0px'));
$actions = Display::tag('div', $edit_link . $clone_link . $delete_link, array('class' => 'edition', 'style' => 'width:100px; right:10px; margin-top: 8px; position: absolute; top: 10%;'));
$title = Security::remove_XSS($objQuestionTmp->selectTitle());
$move = Display::return_icon('all_directions.png', get_lang('Move'), array('class' => 'moved', 'style' => 'margin-bottom:-0.5em;'));
// Question name
$questionName = Display::tag('div', '<a href="#" title = "' . Security::remove_XSS($title) . '">' . $move . ' ' . cut($title, 42) . '</a>', array('style' => $styleQuestion));
// Question type
list($typeImg, $typeExpl) = $objQuestionTmp->get_type_icon_html();
$questionType = Display::tag('div', Display::return_icon($typeImg, $typeExpl, array(), ICON_SIZE_MEDIUM), array('style' => $styleType));
// Question category
$txtQuestionCat = Security::remove_XSS(TestCategory::getCategoryNameForQuestion($objQuestionTmp->id));
if (empty($txtQuestionCat)) {
$txtQuestionCat = "-";
}
$questionCategory = Display::tag('div', '<a href="#" style="padding:0px; margin:0px;" title="' . $txtQuestionCat . '">' . cut($txtQuestionCat, 42) . '</a>', array('style' => $styleCat));
// Question level
$txtQuestionLevel = $objQuestionTmp->level;
if (empty($objQuestionTmp->level)) {
$txtQuestionLevel = '-';
}
$questionLevel = Display::tag('div', $txtQuestionLevel, array('style' => $styleLevel));
// Question score
$questionScore = Display::tag('div', $objQuestionTmp->selectWeighting(), array('style' => $styleScore));
echo '<div id="question_id_list_' . $id . '" >';
echo '<div class="header_operations">';
echo $questionName;
/**
* @todo : add session id when used for session
*/
public function restore_test_category($session_id, $respect_base_content, $destination_course_code)
{
$course_id = api_get_course_int_id();
// Let's restore the categories
$tab_test_category_id_old_new = array();
// used to build the quiz_question_rel_category table
if ($this->course->has_resources(RESOURCE_TEST_CATEGORY)) {
$resources = $this->course->resources;
foreach ($resources[RESOURCE_TEST_CATEGORY] as $id => $CourseCopyTestcategory) {
$tab_test_category_id_old_new[$CourseCopyTestcategory->source_id] = $id;
// check if this test_category already exist in the destination BDD
// do not Database::escape_string $title and $description, it will be done later
$title = $CourseCopyTestcategory->title;
$description = $CourseCopyTestcategory->description;
if (TestCategory::category_exists_with_title($title)) {
switch ($this->file_option) {
case FILE_SKIP:
//Do nothing
break;
case FILE_RENAME:
$new_title = $title . "_";
while (TestCategory::category_exists_with_title($new_title)) {
$new_title .= "_";
}
$test_category = new TestCategory(0, $new_title, $description);
$new_id = $test_category->addCategoryInBDD();
$tab_test_category_id_old_new[$CourseCopyTestcategory->source_id] = $new_id;
break;
case FILE_OVERWRITE:
$id = TestCategory::get_category_id_for_title($title);
$my_cat = new TestCategory($id);
$my_cat->name = $title;
$my_cat->modifyCategory();
$tab_test_category_id_old_new[$CourseCopyTestcategory->source_id] = $id;
break;
}
} else {
// create a new test_category
$test_category = new TestCategory(0, $title, $description);
$new_id = $test_category->addCategoryInBDD();
$tab_test_category_id_old_new[$CourseCopyTestcategory->source_id] = $new_id;
}
$this->course->resources[RESOURCE_TEST_CATEGORY][$id]->destination_id = $tab_test_category_id_old_new[$CourseCopyTestcategory->source_id];
}
}
// lets check if quizzes-question are restored too, to redo the link between test_category and quizzes question for questions restored
// we can use the source_id field
// question source_id => category source_id
if ($this->course->has_resources(RESOURCE_QUIZQUESTION)) {
// check the category number of each question restored
if (!empty($resources[RESOURCE_QUIZQUESTION])) {
foreach ($resources[RESOURCE_QUIZQUESTION] as $id => $CourseCopyQuestion) {
$new_quiz_question_id = $resources[RESOURCE_QUIZQUESTION][$id]->destination_id;
$question_category = $CourseCopyQuestion->question_category;
if ($question_category > 0) {
TestCategory::add_category_for_question_id($tab_test_category_id_old_new[$question_category], $new_quiz_question_id, $course_id);
}
}
}
}
}
/**
* @param int $exerciseId
* @param int $mediaId
* @return array
*/
public function getQuestionCategoriesOfMediaQuestions($exerciseId, $mediaId)
{
$questions = $this->getQuestionsPerMediaWithCategories($exerciseId, $mediaId);
$questionCategoryList = array();
if (!empty($questions)) {
foreach ($questions as $question) {
$categories = TestCategory::getCategoryForQuestionWithCategoryData($question['iid']);
if (!empty($categories)) {
foreach ($categories as $category) {
$questionCategoryList[$question['iid']][] = $category['iid'];
}
}
}
}
return $questionCategoryList;
}
if ($from != $to) {
$subtitle = trans("messages.from") . ' ' . $from . ' ' . trans("messages.to") . ' ' . $to;
} else {
$subtitle = trans("messages.for") . ' ' . date('Y');
}
if ($interval == 'M') {
$subtitle .= ' (' . trans("messages.monthly") . ') ';
} else {
if ($interval == 'D') {
$subtitle .= ' (' . trans("messages.daily") . ') ';
} else {
$subtitle .= ' (' . trans("messages.weekly") . ') ';
}
}
if ($testCategory) {
$subtitle .= ' - ' . TestCategory::find($testCategory)->name;
}
if ($testType) {
$subtitle .= '(' . TestType::find($testType)->name . ')';
}
echo '"' . $subtitle . '"';
?>
},
credits: {
enabled: 'false'
},
xAxis: {
type: 'datetime',
dateTimeLabelFormats: {
month: '%e. %b',
year: '%b'
