function showCritter()
{
$dsid = 'CRITTER';
$path = drupal_get_path('module', 'Fedora_Repository');
require_once drupal_get_path('module', 'Fedora_Repository') . '/ObjectHelper.php';
require_once drupal_get_path('module', 'Fedora_Repository') . '/CollectionClass.php';
$objectHelper = new ObjectHelper();
$collectionHelper = new CollectionClass();
$xmlstr = $collectionHelper->getStream($this->pid, "CRITTER");
html_entity_decode($xmlstr);
if ($xmlstr == null || strlen($xmlstr) < 5) {
return " ";
}
try {
$proc = new XsltProcessor();
} catch (Exception $e) {
drupal_set_message(t($e->getMessage()), 'error');
return " ";
}
$xsl = new DomDocument();
$xsl->load($path . '/mnpl/xsl/critter.xsl');
$input = new DomDocument();
$input->loadXML(trim($xmlstr));
$xsl = $proc->importStylesheet($xsl);
$newdom = $proc->transformToDoc($input);
$content = $newdom->saveXML();
$pid = $this->pid;
session_start();
$_SESSION['pid'] = $pid;
// set labid as session variable to build identifier in add fraction, etc
$cxl = new SimpleXMLElement($xmlstr);
$labid = implode($cxl->xpath('//critters:lab_id'));
$_SESSION['labid'] = $labid;
$itqlQuery = 'select $object $title from <#ri> where $object <fedora-model:label> $title and $object <fedora-rels-ext:isPartOf> <info:fedora/' . $pid . '> and $object <fedora-model:state> <info:fedora/fedora-system:def/model#Active> order by $title';
$relatedItems = $collectionHelper->getRelatedItems($this->pid, $itqlQuery);
$sxe = new SimpleXMLElement($relatedItems);
$nmspace = $sxe->getNamespaces(true);
$regspace = $sxe->registerXPathNamespace('ri', implode($nmspace));
// begin fractions
global $base_url;
if (user_access('edit fedora meta data')) {
$editspec = '<a href =' . $base_url . '/fedora/repository/editmetadata/' . $pid . '/' . $dsid . '>Edit This Specimen</a><br>';
} else {
$editspec = '';
}
if (user_access('ingest new fedora objects')) {
$flabel = '<h4>Fractions — <a href="' . $base_url . '/fedora/ingestObject/vre:mnpl-fractions/MNPL%20Fraction%20Collection/mnpl-fractionCModel">Add Fraction</a></h4>';
} else {
$flabel = '<h4>Fractions</h4>';
}
if (stristr(implode($sxe->xpath('//ri:title')), 'fraction')) {
$fraction .= '<table width="100%" cellpadding="2"><tr><td>Identifier</td><td>Weight</td><td>PTP1B</td><td>HCT116</td><td>HELA</td><td>PC3</td><td>ARE</td><td>Antiproliferative</td></tr>';
foreach ($sxe->xpath('//@uri') as $link) {
if (strstr($link, 'fraction')) {
$link = substr($link, 12);
$fraction .= '<tr>';
$fraction .= '<td><a href = "' . $base_url . '/fedora/repository/' . $link . '">' . substr($link, 18) . '</a></td>';
$fraction .= $this->show_fraction_details($link);
$fraction .= '</tr>';
}
}
$fraction .= '</table>';
} else {
$fraction = "<div>No Fractions present for this Specimen</div>";
}
// return compounds
$clabel = '<br /><h4>Compounds';
if (user_access('ingest new fedora objects')) {
$clabel .= ' — <a href="' . $base_url . '/fedora/ingestObject/vre:mnpl-compounds">Add Compound</a></h4>';
}
if (stristr(implode($sxe->xpath('//ri:title')), 'compound')) {
// if(in_array('COMPOUND',$sxe->xpath('//ri:contentmod'))){
$compound .= '<table width="100%" cellpadding="2"><tr><td>Identifier</td><td>Weight</td><td>PTP1B</td><td>HCT116</td><td>HELA</td><td>PC3</td><td>ARE</td><td>Antiproliferative</td></tr>';
foreach ($sxe->xpath('//@uri') as $link) {
if (strstr($link, 'compound')) {
$link = substr($link, 12);
$compound .= '<tr>';
$compound .= '<td><a href = "' . $base_url . '/fedora/repository/' . $link . '">' . substr($link, 18) . '</a></td>';
$compound .= $this->show_compound_details($link);
$compound .= '</tr>';
}
}
$compound .= '</table>';
} else {
$compound = "<div>No Compounds present for this Specimen</div>";
}
$datastream_list = $objectHelper->get_datastreams_list_asSimpleXML($this->pid);
$thumbs = '<div><p>';
$thumbs .= '<a href="' . $base_url . '/fedora/repository/' . $pid . '/OBJ" target="_blank"><img src="' . $base_url . '/fedora/imageapi/' . $pid . '/OBJ?op=scale&height=100" /></a> ';
foreach ($datastream_list as $datastream) {
foreach ($datastream as $datastreamValue) {
$test = substr($datastreamValue->ID, 0, 5);
if ($test == 'IMAGE') {
$thumbs .= '<a href="' . $base_url . '/fedora/repository/' . $pid . '/' . $datastreamValue->ID . '" target="_blank"><img src="' . $base_url . '/fedora/imageapi/' . $pid . '/' . $datastreamValue->ID . '?op=scale&height=100" /></a> ';
}
}
}
$thumbs .= '</p></div><br />';
$collection_fieldset = array('#title' => t('MNPL Critter Record'), '#collapsible' => TRUE, '#collapsed' => FALSE, '#value' => $thumbs . $content . $editspec . $flabel . $fraction . $clabel . $compound);
return theme('fieldset', $collection_fieldset);
}
