print '</FORM>' . "\n\n";
$_T->printFooter();
exit;
}
if (PATH_COUNT == 2 && ctype_digit($_PE[1]) && ACTION == 'delete') {
// URL: /transcripts/00001?delete
// Drop specific entry.
$nID = sprintf('%08d', $_PE[1]);
define('PAGE_TITLE', 'Delete transcript information entry #' . $nID);
define('LOG_EVENT', 'TranscriptDelete');
// Load appropriate user level for this transcript.
lovd_isAuthorized('transcript', $nID);
// This call will make database queries if necessary.
lovd_requireAUTH(LEVEL_CURATOR);
require ROOT_PATH . 'class/object_transcripts.php';
$_DATA = new LOVD_Transcript();
$zData = $_DATA->loadEntry($nID);
require ROOT_PATH . 'inc-lib-form.php';
if (!empty($_POST)) {
lovd_errorClean();
// Mandatory fields.
if (empty($_POST['password'])) {
lovd_errorAdd('password', 'Please fill in the \'Enter your password for authorization\' field.');
}
// User had to enter his/her password for authorization.
if ($_POST['password'] && !lovd_verifyPassword($_POST['password'], $_AUTH['password'])) {
lovd_errorAdd('password', 'Please enter your correct password for authorization.');
}
if (!lovd_error()) {
// Query text.
// This also deletes the entries in variants.
$aNavigation[$_PE[0] . '/' . $sID . '?sortCurators'] = array('', 'Sort/hide curator names', 1);
}
$aNavigation[$_PE[0] . '/' . $sID . '?empty'] = array('menu_empty.png', 'Empty this gene database', (bool) $zData['variants']);
$aNavigation[$_PE[0] . '/' . $sID . '/graphs'] = array('menu_graphs.png', 'View graphs about this gene database', 1);
$aNavigation[$_PE[0] . '/' . $sID . '/columns'] = array('menu_columns.png', 'View enabled variant columns', 1);
$aNavigation[$_PE[0] . '/' . $sID . '/columns?order'] = array('menu_columns.png', 'Re-order enabled variant columns', 1);
$aNavigation['columns/VariantOnTranscript'] = array('menu_columns.png', 'View all available variant columns', 1);
$aNavigation['download/all/gene/' . $sID] = array('menu_save.png', 'Download all this gene\'s data', 1);
$aNavigation['javascript:lovd_openWindow(\'' . lovd_getInstallURL() . 'scripts/refseq_parser.php?step=1&symbol=' . $sID . '\', \'refseq_parser\', 900, 500);'] = array('menu_scripts.png', 'Create human-readable refseq file', $zData['refseq_UD'] && count($zData['transcripts']));
}
lovd_showJGNavigation($aNavigation, 'Genes');
$_GET['search_geneid'] = '="' . $sID . '"';
print '<BR><BR>' . "\n\n";
$_T->printTitle('Active transcripts', 'H4');
require ROOT_PATH . 'class/object_transcripts.php';
$_DATA = new LOVD_Transcript();
$_DATA->setSortDefault('variants');
$_DATA->viewList('Transcripts_for_G_VE', 'geneid', true, true);
// Disclaimer.
if ($zData['disclaimer']) {
print '<BR>' . "\n\n" . ' <TABLE border="0" cellpadding="0" cellspacing="1" width="950" class="data">' . "\n" . ' <TR>' . "\n" . ' <TH class="S15">Copyright & disclaimer</TH></TR>' . "\n" . ' <TR class="S11">' . "\n" . ' <TD>' . $zData['disclaimer_text_'] . '</TD></TR></TABLE><BR>' . "\n\n";
}
lovd_printGeneFooter();
$_T->printFooter();
exit;
}
if (PATH_COUNT == 1 && ACTION == 'create') {
// URL: /genes?create
// Create a new entry.
define('PAGE_TITLE', 'Create a new gene information entry');
define('LOG_EVENT', 'GeneCreate');
