if ($_SERVER["SERVER_PORT"] && $_SERVER["SERVER_PORT"] != 80) {
$urlPrefix .= ':' . $_SERVER["SERVER_PORT"];
}
$urlPrefix .= $clientRoot . (substr($clientRoot, -1) == '/' ? '' : '/');
$feedLink = $urlPrefix . 'webservices/dwc/rss.xml';
echo '<a href="' . $feedLink . '" target="_blank">' . $feedLink . '</a>';
} else {
echo '--feed not published for any of the collections within the portal--';
}
?>
</div>
<?php
if ($collId) {
if ($action == 'Create/Refresh Darwin Core Archive') {
echo '<ul>';
$dwcaManager->setVerbose(1);
$dwcaManager->createDwcArchive();
$dwcaManager->writeRssFile();
echo '</ul>';
}
if ($dwcaArr = $dwcaManager->getDwcaItems($collId)) {
foreach ($dwcaArr as $k => $v) {
?>
<div style="margin:10px;">
<div>
<b>Title:</b> <?php
echo $v['title'];
?>
<form action="datapublisher.php" method="post" style="display:inline;" onsubmit="return window.confirm('Are you sure you want to delete this archive?');">
<input type="hidden" name="colliddel" value="<?php
header("Expires: Mon, 26 Jul 1997 05:00:00 GMT");
header("Content-Type: text/html; charset=" . $charset);
$collid = $_REQUEST["collid"];
$cntStr = '';
if ($collid && is_numeric($collid)) {
$isEditor = false;
if ($IS_ADMIN || array_key_exists("CollAdmin", $USER_RIGHTS) && in_array($collid, $USER_RIGHTS["CollAdmin"])) {
$isEditor = true;
}
if ($isEditor) {
$processingStatus = array_key_exists('ps', $_REQUEST) ? $_REQUEST['ps'] : '';
$customField1 = array_key_exists('cf1', $_POST) ? $_POST['cf1'] : '';
$customField2 = array_key_exists('cf2', $_POST) ? $_POST['cf2'] : '';
$dwcaHandler = new DwcArchiverOccurrence();
$dwcaHandler->setCollArr($collid);
$dwcaHandler->setVerbose(0);
$dwcaHandler->addCondition('decimallatitude', 'NULL');
$dwcaHandler->addCondition('decimallongitude', 'NULL');
$dwcaHandler->addCondition('catalognumber', 'NOTNULL');
$dwcaHandler->addCondition('locality', 'NOTNULL');
if ($processingStatus) {
$dwcaHandler->addCondition('processingstatus', 'EQUALS', $processingStatus);
}
if ($customField1) {
$dwcaHandler->addCondition($customField1, $_POST['ct1'], $_POST['cv1']);
}
if ($customField2) {
$dwcaHandler->addCondition($customField2, $_POST['ct2'], $_POST['cv2']);
}
$cntStr = $dwcaHandler->getOccurrenceCnt();
}
public function exportDataset($dsid)
{
//Get occurrence records
$zip = array_key_exists('zip', $_POST) ? $_POST['zip'] : 0;
$format = $_POST['format'];
$extended = array_key_exists('extended', $_POST) ? $_POST['extended'] : 0;
$redactLocalities = 1;
$rareReaderArr = array();
if ($IS_ADMIN || array_key_exists("CollAdmin", $userRights)) {
$redactLocalities = 0;
} elseif (array_key_exists("RareSppAdmin", $userRights) || array_key_exists("RareSppReadAll", $userRights)) {
$redactLocalities = 0;
} else {
if (array_key_exists('CollEditor', $userRights)) {
$rareReaderArr = $userRights['CollEditor'];
}
if (array_key_exists('RareSppReader', $userRights)) {
$rareReaderArr = array_unique(array_merge($rareReaderArr, $userRights['RareSppReader']));
}
}
$dwcaHandler = new DwcArchiverOccurrence();
$dwcaHandler->setCharSetOut($cSet);
$dwcaHandler->setSchemaType($schema);
$dwcaHandler->setExtended($extended);
$dwcaHandler->setDelimiter($format);
$dwcaHandler->setVerbose(0);
$dwcaHandler->setRedactLocalities($redactLocalities);
if ($rareReaderArr) {
$dwcaHandler->setRareReaderArr($rareReaderArr);
}
$occurManager = new OccurrenceManager();
$dwcaHandler->setCustomWhereSql($occurManager->getSqlWhere());
$outputFile = null;
if ($zip) {
//Ouput file is a zip file
$includeIdent = array_key_exists('identifications', $_POST) ? 1 : 0;
$dwcaHandler->setIncludeDets($includeIdent);
$images = array_key_exists('images', $_POST) ? 1 : 0;
$dwcaHandler->setIncludeImgs($images);
$outputFile = $dwcaHandler->createDwcArchive('webreq');
} else {
//Output file is a flat occurrence file (not a zip file)
$outputFile = $dwcaHandler->getOccurrenceFile();
}
//ob_start();
$contentDesc = '';
if ($schema == 'dwc') {
$contentDesc = 'Darwin Core ';
} else {
$contentDesc = 'Symbiota ';
}
$contentDesc .= 'Occurrence ';
if ($zip) {
$contentDesc .= 'Archive ';
}
$contentDesc .= 'File';
header('Content-Description: ' . $contentDesc);
if ($zip) {
header('Content-Type: application/zip');
} elseif ($format == 'csv') {
header('Content-Type: text/csv; charset=' . $charset);
} else {
header('Content-Type: text/html; charset=' . $charset);
}
header('Content-Disposition: attachment; filename=' . basename($outputFile));
header('Content-Transfer-Encoding: binary');
header('Expires: 0');
header('Cache-Control: must-revalidate, post-check=0, pre-check=0');
header('Pragma: public');
header('Content-Length: ' . filesize($outputFile));
ob_clean();
flush();
//od_end_clean();
readfile($outputFile);
unlink($outputFile);
}
<?php
include_once '../../config/symbini.php';
include_once $serverRoot . '/classes/DwcArchiverOccurrence.php';
$collStr = $argv[1];
$serverDomain = $argv[2];
$includeDets = 1;
$includeImgs = 1;
$redactLocalities = 1;
if ($argc > 3 && is_numeric($argv[3])) {
$includeDets = $argv[3];
if ($argc > 4 && is_numeric($argv[4])) {
$includeImgs = $argv[4];
if ($argc > 5 && is_numeric($argv[5])) {
$redactLocalities = $argv[5];
}
}
}
if ($collStr) {
$dwcaManager = new DwcArchiverOccurrence();
$dwcaManager->setIncludeDets($includeDets);
$dwcaManager->setIncludeImgs($includeImgs);
$dwcaManager->setRedactLocalities($redactLocalities);
$dwcaManager->setServerDomain($serverDomain);
$dwcaManager->setTargetPath($serverRoot . (substr($serverRoot, -1) == '/' ? '' : '/') . 'collections/datasets/dwc/');
$dwcaManager->setVerbose(0);
$collArr = explode(',', $collStr);
$dwcaManager->batchCreateDwca($collArr);
}
