public function __construct()
{
$this->mysqli =& $GLOBALS['mysqli_connection'];
if ($GLOBALS['ENV_NAME'] == 'production' && environment_defined('slave')) {
$this->mysqli_slave = load_mysql_environment('slave');
} else {
$this->mysqli_slave =& $this->mysqli;
}
$this->sparql_client = SparqlClient::connection();
$this->published_id = TranslatedResourceStatus::find_or_create_by_label('Published')->id;
$this->trusted_id = Vetted::trusted()->id;
$this->unknown_id = Vetted::unknown()->id;
$this->untrusted_id = Vetted::untrusted()->id;
$this->visible_id = Visibility::visible()->id;
$this->invisible_id = Visibility::invisible()->id;
$this->master_curator_id = CuratorLevel::master_curator()->id;
$this->full_curator_id = CuratorLevel::full_curator()->id;
$this->assistant_curator_id = CuratorLevel::assistant_curator()->id;
$this->curator_ids = CuratorLevel::curator_ids();
$this->data_object_scope = ChangeableObjectType::data_object_scope();
$this->worms_content_partner_id = ContentPartner::find_or_create_by_full_name('World Register of Marine Species')->id;
$this->col_hierarchy_id = Hierarchy::find_or_create_by_label('Species 2000 & ITIS Catalogue of Life: Annual Checklist 2011')->id;
$this->latest_harvest_event_ids();
$this->worms_latest_harvest_event_id();
}
public function __construct($year, $month)
{
$this->mysqli =& $GLOBALS['mysqli_connection'];
$this->year = $year;
$this->month = $month;
$this->year_month = $year . "_" . $month;
$this->bhl_user_id = ContentPartner::find_or_create_by_full_name('Biodiversity Heritage Library')->user_id;
$this->col_user_id = ContentPartner::find_or_create_by_full_name('Catalogue of Life')->user_id;
// we switched Google Analytics accounts on September 2011 when we launched V2
if ($this->year < 2011 || $this->year == 2011 && $this->month < 9) {
$this->profile_name = "EOLv1";
} else {
$this->profile_name = "EOLv2";
}
}
function get_biomedical_terms_availability()
{
$time_start = time_elapsed();
$arr_taxa = array();
print "\n BOA_biomedical_terms [8 of 14]\n";
$BOA_content_partner_id = ContentPartner::find_or_create_by_full_name('Biology of Aging')->id;
//$BOA_content_partner_id = 39;
if (!$BOA_content_partner_id) {
self::save_totals_to_cumulative_txt(array(), "tpm_biomedical_terms");
return;
}
$result = $this->mysqli_slave->query("SELECT Max(he.id) latest_harvent_event_id FROM harvest_events he JOIN resources r ON r.id = he.resource_id WHERE r.content_partner_id = {$BOA_content_partner_id} AND he.published_at Is Not Null");
if ($result && ($row = $result->fetch_assoc())) {
$latest_harvent_event_id = $row['latest_harvent_event_id'];
}
$sql = "SELECT he.taxon_concept_id tc_id FROM harvest_events_hierarchy_entries hehe JOIN hierarchy_entries he ON hehe.hierarchy_entry_id = he.id WHERE hehe.harvest_event_id = {$latest_harvent_event_id} ";
if (isset($GLOBALS['test_taxon_concept_ids'])) {
$sql .= " and he.taxon_concept_id IN (" . implode(",", $GLOBALS['test_taxon_concept_ids']) . ")";
}
$outfile = $this->mysqli_slave->select_into_outfile($sql);
$FILE = fopen($outfile, "r");
if (!$FILE) {
print "!! ERROR: Could not read {$outfile}";
debug("!! ERROR: Could not read {$outfile}");
return;
}
$num_rows = 0;
while (!feof($FILE)) {
if ($line = fgets($FILE)) {
$num_rows++;
$line = trim($line);
$fields = explode("\t", $line);
$tc_id = trim($fields[0]);
$arr_taxa[$tc_id] = "\t" . "1";
}
}
fclose($FILE);
unlink($outfile);
print "\n num_rows: {$num_rows}";
print "\n get_biomedical_terms_availability():" . (time_elapsed() - $time_start) / 60 . " minutes";
self::save_totals_to_cumulative_txt($arr_taxa, "tpm_biomedical_terms");
unset($arr_taxa);
}