/**
* Save settings.
*/
function execute()
{
$articleDao = DAORegistry::getDAO('ArticleDAO');
$signoffDao = DAORegistry::getDAO('SignoffDAO');
$sectionEditorSubmissionDao = DAORegistry::getDAO('SectionEditorSubmissionDAO');
$application = PKPApplication::getApplication();
$request = $this->request;
$user = $request->getUser();
$router = $request->getRouter();
$journal = $router->getContext($request);
$article = $articleDao->newDataObject();
$article->setLocale($journal->getPrimaryLocale());
// FIXME in bug #5543
$article->setUserId($user->getId());
$article->setJournalId($journal->getId());
$article->setSectionId($this->getData('sectionId'));
$article->setLanguage($this->getData('language'));
$article->setTitle($this->getData('title'), null);
// Localized
$article->setAbstract($this->getData('abstract'), null);
// Localized
$article->setDiscipline($this->getData('discipline'), null);
// Localized
$article->setSubjectClass($this->getData('subjectClass'), null);
// Localized
$article->setSubject($this->getData('subject'), null);
// Localized
$article->setCoverageGeo($this->getData('coverageGeo'), null);
// Localized
$article->setCoverageChron($this->getData('coverageChron'), null);
// Localized
$article->setCoverageSample($this->getData('coverageSample'), null);
// Localized
$article->setType($this->getData('type'), null);
// Localized
$article->setSponsor($this->getData('sponsor'), null);
// Localized
$article->setCitations($this->getData('citations'));
$article->setPages($this->getData('pages'));
// Set some default values so the ArticleDAO doesn't complain when adding this article
$article->setDateSubmitted(Core::getCurrentDate());
$article->setStatus(STATUS_PUBLISHED);
$article->setSubmissionProgress(0);
$article->stampStatusModified();
$article->setCurrentRound(1);
$article->setFastTracked(1);
$article->setHideAuthor(0);
$article->setCommentsStatus(0);
// Insert the article to get it's ID
$articleDao->insertObject($article);
$articleId = $article->getId();
// Add authors
$authors = $this->getData('authors');
for ($i = 0, $count = count($authors); $i < $count; $i++) {
if ($authors[$i]['authorId'] > 0) {
// Update an existing author
$author =& $authorDao->getAuthor($authors[$i]['authorId'], $articleId);
$isExistingAuthor = true;
} else {
// Create a new author
$author = new Author();
$isExistingAuthor = false;
}
if ($author != null) {
$author->setSubmissionId($articleId);
$author->setFirstName($authors[$i]['firstName']);
$author->setMiddleName($authors[$i]['middleName']);
$author->setLastName($authors[$i]['lastName']);
if (array_key_exists('affiliation', $authors[$i])) {
$author->setAffiliation($authors[$i]['affiliation'], null);
}
$author->setCountry($authors[$i]['country']);
$author->setEmail($authors[$i]['email']);
$author->setUrl($authors[$i]['url']);
if (array_key_exists('competingInterests', $authors[$i])) {
$author->setCompetingInterests($authors[$i]['competingInterests'], null);
}
$author->setBiography($authors[$i]['biography'], null);
$author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0);
$author->setSequence($authors[$i]['seq']);
if ($isExistingAuthor == false) {
$authorDao = DAORegistry::getDAO('AuthorDAO');
/* @var $authorDao AuthorDAO */
$authorDao->insertObject($author);
}
}
}
// Add the submission files as galleys
import('lib.pkp.classes.file.TemporaryFileManager');
import('classes.file.ArticleFileManager');
$tempFileIds = $this->getData('tempFileId');
$temporaryFileManager = new TemporaryFileManager();
$articleFileManager = new ArticleFileManager($articleId);
$designatedPrimary = false;
foreach (array_keys($tempFileIds) as $locale) {
$temporaryFile = $temporaryFileManager->getFile($tempFileIds[$locale], $user->getId());
$fileId = null;
if ($temporaryFile) {
$fileId = $articleFileManager->temporaryFileToArticleFile($temporaryFile, SUBMISSION_FILE_SUBMISSION);
$fileType = $temporaryFile->getFileType();
if (strstr($fileType, 'html')) {
import('classes.article.ArticleHTMLGalley');
$galley = new ArticleHTMLGalley();
} else {
import('classes.article.ArticleGalley');
$galley = new ArticleGalley();
}
$galley->setArticleId($articleId);
$galley->setFileId($fileId);
$galley->setLocale($locale);
if ($galley->isHTMLGalley()) {
$galley->setLabel('HTML');
} else {
if (strstr($fileType, 'pdf')) {
$galley->setLabel('PDF');
} else {
if (strstr($fileType, 'postscript')) {
$galley->setLabel('Postscript');
} else {
if (strstr($fileType, 'xml')) {
$galley->setLabel('XML');
} else {
$galley->setLabel(__('common.untitled'));
}
}
}
}
$galleyDao = DAORegistry::getDAO('ArticleGalleyDAO');
$galleyDao->insertGalley($galley);
if (!$designatedPrimary) {
$article->setSubmissionFileId($fileId);
if ($locale == $journal->getPrimaryLocale()) {
// Used to make sure that *some* file
// is designated Review Version, but
// preferrably the primary locale.
$designatedPrimary = true;
}
}
}
// Update file search index
import('classes.search.ArticleSearchIndex');
$articleSearchIndex = new ArticleSearchIndex();
if (isset($galley)) {
$articleSearchIndex->articleFileChanged($galley->getArticleId(), SUBMISSION_SEARCH_GALLEY_FILE, $galley->getFileId());
}
$articleSearchIndex->articleChangesFinished();
}
// Designate this as the review version by default.
$authorSubmissionDao = DAORegistry::getDAO('AuthorSubmissionDAO');
$authorSubmission =& $authorSubmissionDao->getAuthorSubmission($articleId);
import('classes.submission.author.AuthorAction');
AuthorAction::designateReviewVersion($authorSubmission, true);
// Accept the submission
$sectionEditorSubmission =& $sectionEditorSubmissionDao->getSectionEditorSubmission($articleId);
$articleFileManager = new ArticleFileManager($articleId);
import('classes.submission.sectionEditor.SectionEditorAction');
assert(false);
// FIXME: $decisionLabels missing from call below.
SectionEditorAction::recordDecision($this->request, $sectionEditorSubmission, SUBMISSION_EDITOR_DECISION_ACCEPT);
import('classes.author.form.submit.AuthorSubmitForm');
AuthorSubmitForm::assignEditors($article);
$articleDao->updateObject($article);
// Add to end of editing queue
import('classes.submission.editor.EditorAction');
if (isset($galley)) {
EditorAction::expediteSubmission($article, $this->request);
}
if ($this->getData('destination') == "issue") {
// Add to an existing issue
$issueId = $this->getData('issueId');
$this->scheduleForPublication($articleId, $issueId);
}
// Import the references list.
$citationDao = DAORegistry::getDAO('CitationDAO');
$rawCitationList = $article->getCitations();
$citationDao->importCitations($request, ASSOC_TYPE_ARTICLE, $articleId, $rawCitationList);
// Index article.
import('classes.search.ArticleSearchIndex');
$articleSearchIndex = new ArticleSearchIndex();
$articleSearchIndex->articleMetadataChanged($article);
$articleSearchIndex->articleChangesFinished();
}
/**
* Internal function to return an ArticleGalley object from a row.
* @param $row array
* @return ArticleGalley
*/
function &_returnGalleyFromRow(&$row)
{
if ($row['html_galley']) {
$galley = new ArticleHTMLGalley();
// HTML-specific settings
$galley->setStyleFileId($row['style_file_id']);
if ($row['style_file_id']) {
$galley->setStyleFile($this->articleFileDao->getArticleFile($row['style_file_id']));
}
// Retrieve images
$images =& $this->getGalleyImages($row['galley_id']);
$galley->setImageFiles($images);
} else {
$galley = new ArticleGalley();
}
$galley->setId($row['galley_id']);
$galley->setArticleId($row['article_id']);
$galley->setLocale($row['locale']);
$galley->setFileId($row['file_id']);
$galley->setLabel($row['label']);
$galley->setFileStage($row['file_stage']);
$galley->setSequence($row['seq']);
$galley->setRemoteURL($row['remote_url']);
// ArticleFile set methods
$galley->setFileName($row['file_name']);
$galley->setOriginalFileName($row['original_file_name']);
$galley->setFileType($row['file_type']);
$galley->setFileSize($row['file_size']);
$galley->setDateModified($this->datetimeFromDB($row['date_modified']));
$galley->setDateUploaded($this->datetimeFromDB($row['date_uploaded']));
$this->getDataObjectSettings('article_galley_settings', 'galley_id', $row['galley_id'], $galley);
HookRegistry::call('ArticleGalleyDAO::_returnGalleyFromRow', array(&$galley, &$row));
return $galley;
}
/**
* Save changes to the galley.
* @return int the galley ID
*/
function execute($fileName = null, $createRemote = false)
{
import('classes.file.ArticleFileManager');
$articleFileManager = new ArticleFileManager($this->articleId);
$galleyDao =& DAORegistry::getDAO('ArticleGalleyDAO');
$fileName = isset($fileName) ? $fileName : 'galleyFile';
$journal =& Request::getJournal();
$fileId = null;
$articleDao =& DAORegistry::getDAO('ArticleDAO');
$article =& $articleDao->getArticle($this->articleId, $journal->getId());
if (isset($this->galley)) {
$galley =& $this->galley;
// Upload galley file
if ($articleFileManager->uploadedFileExists($fileName)) {
if ($galley->getFileId()) {
$articleFileManager->uploadPublicFile($fileName, $galley->getFileId());
$fileId = $galley->getFileId();
} else {
$fileId = $articleFileManager->uploadPublicFile($fileName);
$galley->setFileId($fileId);
}
// Update file search index
import('classes.search.ArticleSearchIndex');
$articleSearchIndex = new ArticleSearchIndex();
$articleSearchIndex->articleFileChanged($this->articleId, ARTICLE_SEARCH_GALLEY_FILE, $galley->getFileId());
$articleSearchIndex->articleChangesFinished();
}
if ($articleFileManager->uploadedFileExists('styleFile')) {
// Upload stylesheet file
$styleFileId = $articleFileManager->uploadPublicFile('styleFile', $galley->getStyleFileId());
$galley->setStyleFileId($styleFileId);
} else {
if ($this->getData('deleteStyleFile')) {
// Delete stylesheet file
$styleFile =& $galley->getStyleFile();
if (isset($styleFile)) {
$articleFileManager->deleteFile($styleFile->getFileId());
}
}
}
// Update existing galley
$galley->setLabel($this->getData('label'));
if ($journal->getSetting('enablePublicGalleyId')) {
$galley->setStoredPubId('publisher-id', $this->getData('publicGalleyId'));
}
$galley->setLocale($this->getData('galleyLocale'));
if ($this->getData('remoteURL')) {
$galley->setRemoteURL($this->getData('remoteURL'));
}
// consider the additional field names from the public identifer plugins
import('classes.plugins.PubIdPluginHelper');
$pubIdPluginHelper = new PubIdPluginHelper();
$pubIdPluginHelper->execute($this, $galley);
parent::execute();
$galleyDao->updateGalley($galley);
} else {
// Upload galley file
if ($articleFileManager->uploadedFileExists($fileName)) {
$fileType = $articleFileManager->getUploadedFileType($fileName);
$fileId = $articleFileManager->uploadPublicFile($fileName);
}
if (isset($fileType) && strstr($fileType, 'html')) {
// Assume HTML galley
$galley = new ArticleHTMLGalley();
} else {
$galley = new ArticleGalley();
}
$galley->setArticleId($this->articleId);
$galley->setFileId($fileId);
if ($this->getData('label') == null) {
// Generate initial label based on file type
$enablePublicGalleyId = $journal->getSetting('enablePublicGalleyId');
if ($galley->isHTMLGalley()) {
$galley->setLabel('HTML');
if ($enablePublicGalleyId) {
$galley->setStoredPubId('publisher-id', 'html');
}
} else {
if ($createRemote) {
$galley->setLabel(__('common.remote'));
$galley->setRemoteURL(__('common.remoteURL'));
if ($enablePublicGalleyId) {
$galley->setStoredPubId('publisher-id', strtolower(__('common.remote')));
}
} else {
if (isset($fileType)) {
if (strstr($fileType, 'pdf')) {
$galley->setLabel('PDF');
if ($enablePublicGalleyId) {
$galley->setStoredPubId('publisher-id', 'pdf');
}
} else {
if (strstr($fileType, 'postscript')) {
$galley->setLabel('PostScript');
if ($enablePublicGalleyId) {
$galley->setStoredPubId('publisher-id', 'ps');
}
} else {
if (strstr($fileType, 'xml')) {
$galley->setLabel('XML');
if ($enablePublicGalleyId) {
$galley->setStoredPubId('publisher-id', 'xml');
}
} else {
if (strstr($fileType, 'epub')) {
$galley->setLabel('EPUB');
if ($enablePublicGalleyId) {
$galley->setStoredPubId('publisher-id', 'epub');
}
}
}
}
}
}
}
}
if ($galley->getLabel() == null) {
$galley->setLabel(__('common.untitled'));
}
} else {
$galley->setLabel($this->getData('label'));
}
$galley->setLocale($article->getLocale());
if ($enablePublicGalleyId) {
// check to make sure the assigned public id doesn't already exist for another galley of this article
$galleyDao =& DAORegistry::getDAO('ArticleGalleyDAO');
/* @var $galleylDao ArticleGalleyDAO */
$publicGalleyId = $galley->getPubId('publisher-id');
$suffix = '';
$i = 1;
while ($galleyDao->getGalleyByPubId('publisher-id', $publicGalleyId . $suffix, $this->articleId)) {
$suffix = '_' . $i++;
}
$galley->setStoredPubId('publisher-id', $publicGalleyId . $suffix);
}
parent::execute();
// Insert new galley
$galleyDao->insertGalley($galley);
$this->galleyId = $galley->getId();
}
if ($fileId) {
// Update file search index
import('classes.search.ArticleSearchIndex');
$articleSearchIndex = new ArticleSearchIndex();
$articleSearchIndex->articleFileChanged($this->articleId, ARTICLE_SEARCH_GALLEY_FILE, $fileId);
$articleSearchIndex->articleChangesFinished();
}
// Stamp the article modification (for OAI)
$articleDao->updateArticle($article);
return $this->galleyId;
}
function handleGalleyNode(&$journal, &$galleyNode, &$issue, &$section, &$article, &$errors, $isCommandLine, $isHtml, $galleyCount, &$articleFileManager)
{
$errors = array();
$journalSupportedLocales = array_keys($journal->getSupportedLocaleNames());
// => journal locales must be set up before
$journalPrimaryLocale = $journal->getPrimaryLocale();
$galleyDao =& DAORegistry::getDAO('ArticleGalleyDAO');
if ($isHtml) {
$galley = new ArticleHtmlGalley();
} else {
$galley = new ArticleGalley();
}
$galley->setArticleId($article->getId());
$galley->setSequence($galleyCount);
// just journal supported locales?
$locale = $galleyNode->getAttribute('locale');
if ($locale == '') {
$locale = $journalPrimaryLocale;
} elseif (!in_array($locale, $journalSupportedLocales)) {
$errors[] = array('plugins.importexport.native.import.error.galleyLocaleUnsupported', array('articleTitle' => $article->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification(), 'locale' => $locale));
return false;
}
$galley->setLocale($locale);
/* --- Galley Label --- */
if (!($node = $galleyNode->getChildByName('label'))) {
$errors[] = array('plugins.importexport.native.import.error.galleyLabelMissing', array('articleTitle' => $article->getLocalizedTitle(), 'sectionTitle' => $section->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification()));
return false;
}
$galley->setLabel($node->getValue());
/* --- Galley File --- */
if (!($node = $galleyNode->getChildByName('file'))) {
$errors[] = array('plugins.importexport.native.import.error.galleyFileMissing', array('articleTitle' => $article->getLocalizedTitle(), 'sectionTitle' => $section->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification()));
return false;
}
if ($href = $node->getChildByName('href')) {
$url = $href->getAttribute('src');
if ($isCommandLine || NativeImportDom::isAllowedMethod($url)) {
if ($isCommandLine && NativeImportDom::isRelativePath($url)) {
// The command-line tool does a chdir; we need to prepend the original pathname to relative paths so we're not looking in the wrong place.
$url = PWD . '/' . $url;
}
if (($fileId = $articleFileManager->copyPublicFile($url, $href->getAttribute('mime_type'))) === false) {
$errors[] = array('plugins.importexport.native.import.error.couldNotCopy', array('url' => $url));
return false;
}
}
}
if ($embed = $node->getChildByName('embed')) {
if (($type = $embed->getAttribute('encoding')) !== 'base64') {
$errors[] = array('plugins.importexport.native.import.error.unknownEncoding', array('type' => $type));
return false;
}
$originalName = $embed->getAttribute('filename');
if (($fileId = $articleFileManager->writePublicFile($originalName, base64_decode($embed->getValue()), $embed->getAttribute('mime_type'))) === false) {
$errors[] = array('plugins.importexport.native.import.error.couldNotWriteFile', array('originalName' => $originalName));
return false;
}
}
if (!isset($fileId)) {
$errors[] = array('plugins.importexport.native.import.error.galleyFileMissing', array('articleTitle' => $article->getLocalizedTitle(), 'sectionTitle' => $section->getLocalizedTitle(), 'issueTitle' => $issue->getIssueIdentification()));
return false;
}
$galley->setFileId($fileId);
$galleyDao->insertGalley($galley);
if ($isHtml) {
$result = NativeImportDom::handleHtmlGalleyNodes($galleyNode, $articleFileManager, $galley, $errors, $isCommandLine);
if (!$result) {
return false;
}
}
return true;
}
/**
* Rush a new submission into the end of the editing queue.
* @param $article object
*/
function expediteSubmission($article, $request)
{
$user =& $request->getUser();
import('classes.submission.editor.EditorAction');
import('classes.submission.sectionEditor.SectionEditorAction');
import('classes.submission.proofreader.ProofreaderAction');
$sectionEditorSubmissionDao =& DAORegistry::getDAO('SectionEditorSubmissionDAO');
$sectionEditorSubmission =& $sectionEditorSubmissionDao->getSectionEditorSubmission($article->getId());
$submissionFile = $sectionEditorSubmission->getSubmissionFile();
// Add a log entry before doing anything.
import('classes.article.log.ArticleLog');
import('classes.article.log.ArticleEventLogEntry');
ArticleLog::logEvent($request, $article, ARTICLE_LOG_EDITOR_EXPEDITE, 'log.editor.submissionExpedited', array('editorName' => $user->getFullName()));
// 1. Ensure that an editor is assigned.
$editAssignments =& $sectionEditorSubmission->getEditAssignments();
if (empty($editAssignments)) {
// No editors are currently assigned; assign self.
EditorAction::assignEditor($article->getId(), $user->getId(), true, false, $request);
}
// 2. Accept the submission and send to copyediting.
$sectionEditorSubmission =& $sectionEditorSubmissionDao->getSectionEditorSubmission($article->getId());
if (!$sectionEditorSubmission->getFileBySignoffType('SIGNOFF_COPYEDITING_INITIAL', true)) {
SectionEditorAction::recordDecision($sectionEditorSubmission, SUBMISSION_EDITOR_DECISION_ACCEPT, $request);
$reviewFile = $sectionEditorSubmission->getReviewFile();
SectionEditorAction::setCopyeditFile($sectionEditorSubmission, $reviewFile->getFileId(), $reviewFile->getRevision(), $request);
}
// 3. Add a galley.
$sectionEditorSubmission =& $sectionEditorSubmissionDao->getSectionEditorSubmission($article->getId());
$galleys =& $sectionEditorSubmission->getGalleys();
if (empty($galleys)) {
// No galley present -- use copyediting file.
import('classes.file.ArticleFileManager');
$copyeditFile =& $sectionEditorSubmission->getFileBySignoffType('SIGNOFF_COPYEDITING_INITIAL');
$fileType = $copyeditFile->getFileType();
$articleFileManager = new ArticleFileManager($article->getId());
$fileId = $articleFileManager->copyPublicFile($copyeditFile->getFilePath(), $fileType);
if (strstr($fileType, 'html')) {
$galley = new ArticleHTMLGalley();
} else {
$galley = new ArticleGalley();
}
$galley->setArticleId($article->getId());
$galley->setFileId($fileId);
$galley->setLocale(AppLocale::getLocale());
if ($galley->isHTMLGalley()) {
$galley->setLabel('HTML');
} else {
if (strstr($fileType, 'pdf')) {
$galley->setLabel('PDF');
} else {
if (strstr($fileType, 'postscript')) {
$galley->setLabel('Postscript');
} else {
if (strstr($fileType, 'xml')) {
$galley->setLabel('XML');
} else {
$galley->setLabel(__('common.untitled'));
}
}
}
}
$galleyDao =& DAORegistry::getDAO('ArticleGalleyDAO');
$galleyDao->insertGalley($galley);
// Update file search index
import('classes.search.ArticleSearchIndex');
ArticleSearchIndex::updateFileIndex($article->getId(), ARTICLE_SEARCH_GALLEY_FILE, $fileId);
}
$sectionEditorSubmission->setStatus(STATUS_QUEUED);
$sectionEditorSubmissionDao->updateSectionEditorSubmission($sectionEditorSubmission);
}
function importArticles()
{
assert($this->xml->name == 'articles');
$articleDAO =& DAORegistry::getDAO('ArticleDAO');
$articles = $articleDAO->getArticlesByJournalId($this->journal->getId());
$journalFileManager = new JournalFileManager($this->journal);
$publicFileManager =& new PublicFileManager();
$this->nextElement();
while ($this->xml->name == 'article') {
$articleXML = $this->getCurrentElementAsDom();
$article = new Article();
$article->setJournalId($this->journal->getId());
$article->setUserId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $articleXML->userId));
$article->setSectionId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_SECTION, (int) $articleXML->sectionId));
$article->setLocale((string) $articleXML->locale);
$article->setLanguage((string) $articleXML->language);
$article->setCommentsToEditor((string) $articleXML->commentsToEditor);
$article->setCitations((string) $articleXML->citations);
$article->setDateSubmitted((string) $articleXML->dateSubmitted);
$article->setDateStatusModified((string) $articleXML->dateStatusModified);
$article->setLastModified((string) $articleXML->lastModified);
$article->setStatus((int) $articleXML->status);
$article->setSubmissionProgress((int) $articleXML->submissionProgress);
$article->setCurrentRound((int) $articleXML->currentRound);
$article->setPages((string) $articleXML->pages);
$article->setFastTracked((int) $articleXML->fastTracked);
$article->setHideAuthor((int) $articleXML->hideAuthor);
$article->setCommentsStatus((int) $articleXML->commentsStatus);
$articleDAO->insertArticle($article);
$oldArticleId = (int) $articleXML->oldId;
$this->restoreDataObjectSettings($articleDAO, $articleXML->settings, 'article_settings', 'article_id', $article->getId());
$article =& $articleDAO->getArticle($article->getId());
// Reload article with restored settings
$covers = $article->getFileName(null);
if ($covers) {
foreach ($covers as $locale => $oldCoverFileName) {
$sourceFile = $this->publicFolderPath . '/' . $oldCoverFileName;
$extension = $publicFileManager->getExtension($oldCoverFileName);
$destFile = 'cover_issue_' . $article->getId() . "_{$locale}.{$extension}";
$publicFileManager->copyJournalFile($this->journal->getId(), $sourceFile, $destFile);
unlink($sourceFile);
$article->setFileName($destFile, $locale);
$articleDAO->updateArticle($article);
}
}
$articleFileManager = new ArticleFileManager($article->getId());
$authorDAO =& DAORegistry::getDAO('AuthorDAO');
foreach ($articleXML->author as $authorXML) {
$author = new Author();
$author->setArticleId($article->getId());
$author->setFirstName((string) $authorXML->firstName);
$author->setMiddleName((string) $authorXML->middleName);
$author->setLastName((string) $authorXML->lastName);
$author->setSuffix((string) $authorXML->suffix);
$author->setCountry((string) $authorXML->country);
$author->setEmail((string) $authorXML->email);
$author->setUrl((string) $authorXML->url);
$author->setUserGroupId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_GROUP, (int) $authorXML->userGroupId));
$author->setPrimaryContact((int) $authorXML->primaryContact);
$author->setSequence((int) $authorXML->sequence);
$authorDAO->insertAuthor($author);
$this->restoreDataObjectSettings($authorDAO, $authorXML->settings, 'author_settings', 'author_id', $author->getId());
unset($author);
}
$articleEmailLogDAO =& DAORegistry::getDAO('ArticleEmailLogDAO');
$emailLogsXML = array();
foreach ($articleXML->emailLogs->emailLog as $emailLogXML) {
array_unshift($emailLogsXML, $emailLogXML);
}
foreach ($emailLogsXML as $emailLogXML) {
$emailLog = new ArticleEmailLogEntry();
$emailLog->setAssocType(ASSOC_TYPE_ARTICLE);
$emailLog->setAssocId($article->getId());
$emailLog->setSenderId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $emailLogXML->senderId));
$emailLog->setDateSent((string) $emailLogXML->dateSent);
$emailLog->setIPAddress((string) $emailLogXML->IPAddress);
$emailLog->setEventType((int) $emailLogXML->eventType);
$emailLog->setFrom((string) $emailLogXML->from);
$emailLog->setRecipients((string) $emailLogXML->recipients);
$emailLog->setCcs((string) $emailLogXML->ccs);
$emailLog->setBccs((string) $emailLogXML->bccs);
$emailLog->setSubject((string) $emailLogXML->subject);
$emailLog->setBody((string) $emailLogXML->body);
$articleEmailLogDAO->insertObject($emailLog);
$this->idTranslationTable->register(INTERNAL_TRANSFER_OBJECT_ARTICLE_EMAIL_LOG, (int) $emailLogXML->oldId, $emailLog->getId());
}
$articleFileDAO =& DAORegistry::getDAO('ArticleFileDAO');
foreach ($articleXML->articleFile as $articleFileXML) {
try {
$articleFile = new ArticleFile();
$articleFile->setArticleId($article->getId());
$articleFile->setSourceFileId((int) $articleFileXML->sourceFileId);
$articleFile->setSourceRevision((int) $articleFileXML->sourceRevision);
$articleFile->setRevision((int) $articleFileXML->revision);
$articleFile->setFileName((string) $articleFileXML->fileName);
$articleFile->setFileType((string) $articleFileXML->fileType);
$articleFile->setFileSize((string) $articleFileXML->fileSize);
$articleFile->setOriginalFileName((string) $articleFileXML->originalFileName);
$articleFile->setFileStage((int) $articleFileXML->fileStage);
$articleFile->setAssocId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_EMAIL_LOG, (int) $articleFileXML->assocId));
$articleFile->setDateUploaded((string) $articleFileXML->dateUploaded);
$articleFile->setDateModified((string) $articleFileXML->dateModified);
$articleFile->setRound((int) $articleFileXML->round);
$articleFile->setViewable((int) $articleFileXML->viewable);
$articleFileDAO->insertArticleFile($articleFile);
$oldArticleFileId = (int) $articleFileXML->oldId;
$oldFileName = $articleFile->getFileName();
$stagePath = $articleFileManager->fileStageToPath($articleFile->getFileStage());
$fileInTransferPackage = $this->journalFolderPath . "/articles/{$oldArticleId}/{$stagePath}/{$oldFileName}";
$newFileName = $articleFileManager->generateFilename($articleFile, $articleFile->getFileStage(), $articleFile->getOriginalFileName());
$newFilePath = "/articles/" . $article->getId() . "/{$stagePath}/{$newFileName}";
$journalFileManager->copyFile($fileInTransferPackage, $journalFileManager->filesDir . $newFilePath);
unlink($fileInTransferPackage);
$articleFileDAO->updateArticleFile($articleFile);
$this->idTranslationTable->register(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, $oldArticleFileId, $articleFile->getFileId());
} catch (Exception $e) {
}
}
$articleFiles = $articleFileDAO->getArticleFilesByArticle($article->getId());
foreach ($articleFiles as $articleFile) {
try {
$articleFile->setSourceFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, $articleFile->getSourceFileId()));
$articleFileDAO->updateArticleFile($articleFile);
} catch (Exception $e) {
}
}
$suppFileDAO =& DAORegistry::getDAO('SuppFileDAO');
foreach ($articleXML->suppFile as $suppFileXML) {
$suppFile =& new SuppFile();
$suppFile->setArticleId($article->getId());
$suppFile->setRemoteURL((string) $suppFileXML->remoteURL);
$suppFile->setFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $suppFileXML->fileId));
$suppFile->setType((string) $suppFileXML->type);
$suppFile->setDateCreated((string) $suppFileXML->dateCreated);
$suppFile->setLanguage((string) $suppFileXML->language);
$suppFile->setShowReviewers((int) $suppFileXML->showReviewers);
$suppFile->setDateSubmitted((string) $suppFileXML->dateSubmitted);
$suppFile->setSequence((int) $suppFileXML->sequence);
$suppFileDAO->insertSuppFile($suppFile);
$this->restoreDataObjectSettings($suppFileDAO, $suppFileXML->settings, 'article_supp_file_settings', 'supp_id', $suppFile->getId());
}
$articleCommentDAO =& DAORegistry::getDAO('ArticleCommentDAO');
foreach ($articleXML->articleComment as $articleCommentXML) {
$articleComment = new ArticleComment();
$articleComment->setArticleId($article->getId());
$articleComment->setAssocId($article->getId());
$articleComment->setCommentType((int) $articleCommentXML->commentType);
$articleComment->setRoleId((int) $articleCommentXML->roleId);
$articleComment->setAuthorId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $articleCommentXML->authorId));
$articleComment->setCommentTitle((string) $articleCommentXML->commentTitle);
$articleComment->setComments((string) $articleCommentXML->comments);
$articleComment->setDatePosted((string) $articleCommentXML->datePosted);
$articleComment->setDateModified((string) $articleCommentXML->dateModified);
$articleComment->setViewable((int) $articleCommentXML->viewable);
$articleCommentDAO->insertArticleComment($articleComment);
}
$articleGalleyDAO =& DAORegistry::getDAO('ArticleGalleyDAO');
foreach ($articleXML->articleGalley as $articleGalleyXML) {
$articleGalley = null;
if ($articleGalleyXML->htmlGalley == "1") {
$articleGalley = new ArticleHTMLGalley();
} else {
$articleGalley = new ArticleGalley();
}
$articleGalley->setArticleId($article->getId());
$articleGalley->setLocale((string) $articleGalleyXML->locale);
$articleGalley->setFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleGalleyXML->fileId));
$articleGalley->setLabel((string) $articleGalleyXML->label);
$articleGalley->setSequence((int) $articleGalleyXML->sequence);
$articleGalley->setRemoteURL((string) $articleGalleyXML->remoteURL);
if ($articleGalley instanceof ArticleHTMLGalley) {
$articleGalley->setStyleFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleGalleyXML->styleFileId));
}
$articleGalleyDAO->insertGalley($articleGalley);
if ($articleGalley instanceof ArticleHTMLGalley) {
foreach ($articleGalleyXML->htmlGalleyImage as $articleGalleyImageXML) {
$imageId = $this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleGalleyImageXML);
$articleGalleyDAO->insertGalleyImage($articleGalley->getId(), $imageId);
}
}
$this->restoreDataObjectSettings($articleGalleyDAO, $articleGalleyXML->settings, 'article_galley_settings', 'galley_id', $articleGalley->getId());
}
$noteDAO =& DAORegistry::getDAO('NoteDAO');
foreach ($articleXML->articleNote as $articleNoteXML) {
$articleNote = new Note();
$articleNote->setUserId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $articleNoteXML->userId));
$articleNote->setFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleNoteXML->fileId));
$articleNote->setAssocType(ASSOC_TYPE_ARTICLE);
$articleNote->setAssocId($article->getId());
$articleNote->setDateCreated((string) $articleNoteXML->dateCreated);
$articleNote->setDateModified((string) $articleNoteXML->dateModified);
$articleNote->setContents((string) $articleNoteXML->contents);
$articleNote->setTitle((string) $articleNoteXML->title);
$noteDAO->insertObject($articleNote);
}
$editAssignmentDAO =& DAORegistry::getDAO('EditAssignmentDAO');
foreach ($articleXML->editAssignment as $editAssignmentXML) {
$editAssignment = new EditAssignment();
$editAssignment->setArticleId($article->getId());
$editAssignment->setEditorId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $editAssignmentXML->editorId));
$editAssignment->setCanReview((int) $editAssignmentXML->canReview);
$editAssignment->setCanEdit((int) $editAssignmentXML->canEdit);
$editAssignment->setDateUnderway((string) $editAssignmentXML->dateUnderway);
$editAssignment->setDateNotified((string) $editAssignmentXML->dateNotified);
$editAssignmentDAO->insertEditAssignment($editAssignment);
}
$reviewAssignmentDAO =& DAORegistry::getDAO('ReviewAssignmentDAO');
$reviewFormResponseDAO =& DAORegistry::getDAO('ReviewFormResponseDAO');
foreach ($articleXML->reviewAssignment as $reviewAssignmentXML) {
$reviewAssignment = new ReviewAssignment();
$reviewAssignment->setSubmissionId($article->getId());
$reviewAssignment->setReviewerId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $reviewAssignmentXML->reviewerId));
try {
$reviewAssignment->setReviewerFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $reviewAssignmentXML->reviewerFileId));
} catch (Exception $e) {
$this->logger->log("Arquivo do artigo {$oldArticleId} não encontrado. ID: " . (int) $reviewAssignmentXML->reviewerFileId . "\n");
}
$reviewAssignment->setReviewFormId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_REVIEW_FORM, (int) $reviewAssignmentXML->reviewFormId));
$reviewAssignment->setReviewRoundId((int) $reviewAssignmentXML->reviewRoundId);
$reviewAssignment->setStageId((int) $reviewAssignmentXML->stageId);
$reviewAssignment->setReviewerFullName((string) $reviewAssignmentXML->reviewerFullName);
$reviewAssignment->setCompetingInterests((string) $reviewAssignmentXML->competingInterests);
$reviewAssignment->setRegretMessage((string) $reviewAssignmentXML->regretMessage);
$reviewAssignment->setRecommendation((string) $reviewAssignmentXML->recommendation);
$reviewAssignment->setDateAssigned((string) $reviewAssignmentXML->dateAssigned);
$reviewAssignment->setDateNotified((string) $reviewAssignmentXML->dateNotified);
$reviewAssignment->setDateConfirmed((string) $reviewAssignmentXML->dateConfirmed);
$reviewAssignment->setDateCompleted((string) $reviewAssignmentXML->dateCompleted);
$reviewAssignment->setDateAcknowledged((string) $reviewAssignmentXML->dateAcknowledged);
$reviewAssignment->setDateDue((string) $reviewAssignmentXML->dateDue);
$reviewAssignment->setDateResponseDue((string) $reviewAssignmentXML->dateResponseDue);
$reviewAssignment->setLastModified((string) $reviewAssignmentXML->lastModified);
$reviewAssignment->setDeclined((int) $reviewAssignmentXML->declined);
$reviewAssignment->setReplaced((int) $reviewAssignmentXML->replaced);
$reviewAssignment->setCancelled((int) $reviewAssignmentXML->cancelled);
$reviewAssignment->setQuality((int) $reviewAssignmentXML->quality);
$reviewAssignment->setDateRated((string) $reviewAssignmentXML->dateRated);
$reviewAssignment->setDateReminded((string) $reviewAssignmentXML->dateReminded);
$reviewAssignment->setReminderWasAutomatic((int) $reviewAssignmentXML->reminderWasAutomatic);
$reviewAssignment->setRound((int) $reviewAssignmentXML->round);
$reviewAssignment->setReviewRevision((int) $reviewAssignmentXML->reviewRevision);
$reviewAssignment->setReviewMethod((int) $reviewAssignmentXML->reviewMethod);
$reviewAssignment->setUnconsidered((int) $reviewAssignmentXML->unconsidered);
$reviewAssignmentDAO->insertObject($reviewAssignment);
foreach ($reviewAssignmentXML->formResponses->formResponse as $formResponseXML) {
$reviewFormResponseDAO->update('INSERT INTO review_form_responses
(review_form_element_id, review_id, response_type, response_value)
VALUES
(?, ?, ?, ?)', array($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_REVIEW_FORM_ELEMENT, (int) $formResponseXML->reviewFormElementId), $reviewAssignment->getId(), (string) $formResponseXML->responseType, (string) $formResponseXML->responseValue));
}
}
$signoffDAO =& DAORegistry::getDAO('SignoffDAO');
foreach ($articleXML->signoff as $signoffXML) {
$signoff = new Signoff();
$signoff->setAssocType(ASSOC_TYPE_ARTICLE);
$signoff->setAssocId($article->getId());
$signoff->setUserId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $signoffXML->userId));
$signoff->setFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $signoffXML->fileId));
$signoff->setUserGroupId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_GROUP, (int) $signoffXML->userGroupId));
$signoff->setSymbolic((string) $signoffXML->symbolic);
$signoff->setFileRevision((int) $signoffXML->fileRevision);
$signoff->setDateUnderway((string) $signoffXML->dateUnderway);
$signoff->setDateNotified((string) $signoffXML->dateNotified);
$signoff->setDateCompleted((string) $signoffXML->dateCompleted);
$signoff->setDateAcknowledged((string) $signoffXML->dateAcknowledged);
$signoffDAO->insertObject($signoff);
}
$editorSubmissionDAO =& DAORegistry::getDAO('EditorSubmissionDAO');
foreach ($articleXML->editDecisions as $editDecisionXML) {
$editDecisions =& $editorSubmissionDAO->update('INSERT INTO edit_decisions (article_id, round, editor_id, decision, date_decided) values (?, ?, ?, ?, ?)', array($article->getId(), (string) $editDecisionXML->round, $this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $editDecisionXML->editorId), (string) $editDecisionXML->decision, (string) $editDecisionXML->dateDecided));
}
$publishedArticleDAO =& DAORegistry::getDAO('PublishedArticleDAO');
if (isset($articleXML->publishedArticle)) {
$publishedArticleXML = $articleXML->publishedArticle;
$publishedArticle = new PublishedArticle();
$publishedArticle->setId($article->getId());
$publishedArticle->setIssueId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ISSUE, (int) $publishedArticleXML->issueId));
$publishedArticle->setDatePublished((string) $publishedArticleXML->datePublished);
$publishedArticle->setSeq((int) $publishedArticleXML->seq);
$publishedArticle->setAccessStatus((int) $publishedArticleXML->accessStatus);
$publishedArticleDAO->insertPublishedArticle($publishedArticle);
}
$articleEventLogDAO =& DAORegistry::getDAO('ArticleEventLogDAO');
$eventLogsXML =& iterator_to_array($articleXML->eventLogs->eventLog);
$eventLogsXML = array();
foreach ($articleXML->eventLogs->eventLog as $eventLogXML) {
array_unshift($eventLogsXML, $eventLogXML);
}
foreach ($eventLogsXML as $eventLogXML) {
$eventLog = new ArticleEventLogEntry();
$eventLog->setAssocType(ASSOC_TYPE_ARTICLE);
$eventLog->setAssocId($article->getId());
$eventLog->setUserId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_USER, (int) $eventLogXML->userId));
$eventLog->setDateLogged((string) $eventLogXML->dateLogged);
$eventLog->setIPAddress((string) $eventLogXML->IPAddress);
$eventLog->setEventType((int) $eventLogXML->eventType);
$eventLog->setMessage((string) $eventLogXML->message);
$eventLog->setIsTranslated((int) $eventLogXML->isTranslated);
$articleEventLogDAO->insertObject($eventLog);
$this->restoreDataObjectSettings($articleEventLogDAO, $eventLogXML->settings, 'event_log_settings', 'log_id', $eventLog->getId());
}
try {
$article->setSubmissionFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleXML->submissionFileId));
} catch (Exception $e) {
}
try {
$article->setRevisedFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleXML->revisedFileId));
} catch (Exception $e) {
}
try {
$article->setReviewFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleXML->reviewFileId));
} catch (Exception $e) {
}
try {
$article->setEditorFileId($this->idTranslationTable->resolve(INTERNAL_TRANSFER_OBJECT_ARTICLE_FILE, (int) $articleXML->editorFileId));
} catch (Exception $e) {
}
$articleDAO->updateArticle($article);
$this->nextElement();
}
}
/**
* Save settings.
*/
function execute()
{
$articleDao =& DAORegistry::getDAO('ArticleDAO');
$signoffDao =& DAORegistry::getDAO('SignoffDAO');
$sectionEditorSubmissionDao =& DAORegistry::getDAO('SectionEditorSubmissionDAO');
$application =& PKPApplication::getApplication();
$request =& $application->getRequest();
$user =& $request->getUser();
$router =& $request->getRouter();
$journal =& $router->getContext($request);
$article = new Article();
$article->setLocale($journal->getPrimaryLocale());
// FIXME in bug #5543
$article->setUserId($user->getId());
$article->setJournalId($journal->getId());
$article->setSectionId($this->getData('sectionId'));
$article->setLanguage(String::substr($journal->getPrimaryLocale(), 0, 2));
$article->setTitle($this->getData('title'), null);
// Localized
$article->setAbstract($this->getData('abstract'), null);
// Localized
$article->setDiscipline($this->getData('discipline'), null);
// Localized
$article->setSubjectClass($this->getData('subjectClass'), null);
// Localized
$article->setSubject($this->getData('subject'), null);
// Localized
$article->setCoverageGeo($this->getData('coverageGeo'), null);
// Localized
$article->setCoverageChron($this->getData('coverageChron'), null);
// Localized
$article->setCoverageSample($this->getData('coverageSample'), null);
// Localized
$article->setType($this->getData('type'), null);
// Localized
$article->setSponsor($this->getData('sponsor'), null);
// Localized
$article->setCitations($this->getData('citations'));
$article->setPages($this->getData('pages'));
// Set some default values so the ArticleDAO doesn't complain when adding this article
$article->setDateSubmitted(Core::getCurrentDate());
$article->setStatus(STATUS_PUBLISHED);
$article->setSubmissionProgress(0);
$article->stampStatusModified();
$article->setCurrentRound(1);
$article->setFastTracked(1);
$article->setHideAuthor(0);
$article->setCommentsStatus(0);
// Insert the article to get it's ID
$articleDao->insertArticle($article);
$articleId = $article->getId();
// Add authors
$authors = $this->getData('authors');
for ($i = 0, $count = count($authors); $i < $count; $i++) {
if ($authors[$i]['authorId'] > 0) {
// Update an existing author
$author =& $article->getAuthor($authors[$i]['authorId']);
$isExistingAuthor = true;
} else {
// Create a new author
$author = new Author();
$isExistingAuthor = false;
}
if ($author != null) {
$author->setSubmissionId($articleId);
$author->setFirstName($authors[$i]['firstName']);
$author->setMiddleName($authors[$i]['middleName']);
$author->setLastName($authors[$i]['lastName']);
if (array_key_exists('affiliation', $authors[$i])) {
$author->setAffiliation($authors[$i]['affiliation'], null);
}
$author->setCountry($authors[$i]['country']);
$author->setEmail($authors[$i]['email']);
$author->setUrl($authors[$i]['url']);
if (array_key_exists('competingInterests', $authors[$i])) {
$author->setCompetingInterests($authors[$i]['competingInterests'], null);
}
$author->setBiography($authors[$i]['biography'], null);
$author->setPrimaryContact($this->getData('primaryContact') == $i ? 1 : 0);
$author->setSequence($authors[$i]['seq']);
if ($isExistingAuthor == false) {
$article->addAuthor($author);
}
}
}
// Add the submission files as galleys
import('classes.file.TemporaryFileManager');
import('classes.file.ArticleFileManager');
$tempFileIds = $this->getData('tempFileId');
$temporaryFileManager = new TemporaryFileManager();
$articleFileManager = new ArticleFileManager($articleId);
foreach (array_keys($tempFileIds) as $locale) {
$temporaryFile = $temporaryFileManager->getFile($tempFileIds[$locale], $user->getId());
$fileId = null;
if ($temporaryFile) {
$fileId = $articleFileManager->temporaryFileToArticleFile($temporaryFile, ARTICLE_FILE_SUBMISSION);
$fileType = $temporaryFile->getFileType();
if (strstr($fileType, 'html')) {
import('classes.article.ArticleHTMLGalley');
$galley = new ArticleHTMLGalley();
} else {
import('classes.article.ArticleGalley');
$galley = new ArticleGalley();
}
$galley->setArticleId($articleId);
$galley->setFileId($fileId);
$galley->setLocale($locale);
if ($galley->isHTMLGalley()) {
$galley->setLabel('HTML');
} else {
if (strstr($fileType, 'pdf')) {
$galley->setLabel('PDF');
} else {
if (strstr($fileType, 'postscript')) {
$galley->setLabel('Postscript');
} else {
if (strstr($fileType, 'xml')) {
$galley->setLabel('XML');
} else {
$galley->setLabel(__('common.untitled'));
}
}
}
}
$galleyDao =& DAORegistry::getDAO('ArticleGalleyDAO');
$galleyDao->insertGalley($galley);
}
if ($locale == $journal->getPrimaryLocale()) {
$article->setSubmissionFileId($fileId);
$article->SetReviewFileId($fileId);
}
// Update file search index
import('classes.search.ArticleSearchIndex');
if (isset($galley)) {
ArticleSearchIndex::updateFileIndex($galley->getArticleId(), ARTICLE_SEARCH_GALLEY_FILE, $galley->getFileId());
}
}
// Designate this as the review version by default.
$authorSubmissionDao =& DAORegistry::getDAO('AuthorSubmissionDAO');
$authorSubmission =& $authorSubmissionDao->getAuthorSubmission($articleId);
import('classes.submission.author.AuthorAction');
AuthorAction::designateReviewVersion($authorSubmission, true);
// Accept the submission
$sectionEditorSubmission =& $sectionEditorSubmissionDao->getSectionEditorSubmission($articleId);
$articleFileManager = new ArticleFileManager($articleId);
$sectionEditorSubmission->setReviewFile($articleFileManager->getFile($article->getSubmissionFileId()));
import('classes.submission.sectionEditor.SectionEditorAction');
SectionEditorAction::recordDecision($sectionEditorSubmission, SUBMISSION_EDITOR_DECISION_ACCEPT);
// Create signoff infrastructure
$copyeditInitialSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_INITIAL', ASSOC_TYPE_ARTICLE, $articleId);
$copyeditAuthorSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_AUTHOR', ASSOC_TYPE_ARTICLE, $articleId);
$copyeditFinalSignoff = $signoffDao->build('SIGNOFF_COPYEDITING_FINAL', ASSOC_TYPE_ARTICLE, $articleId);
$copyeditInitialSignoff->setUserId(0);
$copyeditAuthorSignoff->setUserId($user->getId());
$copyeditFinalSignoff->setUserId(0);
$signoffDao->updateObject($copyeditInitialSignoff);
$signoffDao->updateObject($copyeditAuthorSignoff);
$signoffDao->updateObject($copyeditFinalSignoff);
$layoutSignoff = $signoffDao->build('SIGNOFF_LAYOUT', ASSOC_TYPE_ARTICLE, $articleId);
$layoutSignoff->setUserId(0);
$signoffDao->updateObject($layoutSignoff);
$proofAuthorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_AUTHOR', ASSOC_TYPE_ARTICLE, $articleId);
$proofProofreaderSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_PROOFREADER', ASSOC_TYPE_ARTICLE, $articleId);
$proofLayoutEditorSignoff = $signoffDao->build('SIGNOFF_PROOFREADING_LAYOUT', ASSOC_TYPE_ARTICLE, $articleId);
$proofAuthorSignoff->setUserId($user->getId());
$proofProofreaderSignoff->setUserId(0);
$proofLayoutEditorSignoff->setUserId(0);
$signoffDao->updateObject($proofAuthorSignoff);
$signoffDao->updateObject($proofProofreaderSignoff);
$signoffDao->updateObject($proofLayoutEditorSignoff);
import('classes.author.form.submit.AuthorSubmitForm');
AuthorSubmitForm::assignEditors($article);
$articleDao->updateArticle($article);
// Add to end of editing queue
import('classes.submission.editor.EditorAction');
if (isset($galley)) {
EditorAction::expediteSubmission($article);
}
if ($this->getData('destination') == "issue") {
// Add to an existing issue
$issueId = $this->getData('issueId');
$this->scheduleForPublication($articleId, $issueId);
}
// Index article.
import('classes.search.ArticleSearchIndex');
ArticleSearchIndex::indexArticleMetadata($article);
// Import the references list.
$citationDao =& DAORegistry::getDAO('CitationDAO');
$rawCitationList = $article->getCitations();
$citationDao->importCitations($request, ASSOC_TYPE_ARTICLE, $articleId, $rawCitationList);
}
/**
* Rush a new submission into the end of the editing queue.
* @param $article object
*/
function expediteSubmission($article)
{
$user =& Request::getUser();
import('classes.submission.editor.EditorAction');
import('classes.submission.sectionEditor.SectionEditorAction');
import('classes.submission.proofreader.ProofreaderAction');
$sectionEditorSubmissionDao =& DAORegistry::getDAO('SectionEditorSubmissionDAO');
$sectionEditorSubmission =& $sectionEditorSubmissionDao->getSectionEditorSubmission($article->getId());
$submissionFile = $sectionEditorSubmission->getSubmissionFile();
// Add a long entry before doing anything.
import('classes.article.log.ArticleLog');
import('classes.article.log.ArticleEventLogEntry');
ArticleLog::logEvent($article->getId(), ARTICLE_LOG_EDITOR_EXPEDITE, ARTICLE_LOG_TYPE_EDITOR, $user->getId(), 'log.editor.submissionExpedited', array('editorName' => $user->getFullName(), 'articleId' => $article->getId()));
// 1. Accept the submission and send to copyediting.
$sectionEditorSubmission =& $sectionEditorSubmissionDao->getSectionEditorSubmission($article->getId());
if (!$sectionEditorSubmission->getFileBySignoffType('SIGNOFF_COPYEDITING_INITIAL', true)) {
SectionEditorAction::recordDecision($sectionEditorSubmission, SUBMISSION_SECTION_DECISION_APPROVED);
$reviewFile = $sectionEditorSubmission->getReviewFile();
SectionEditorAction::setCopyeditFile($sectionEditorSubmission, $reviewFile->getFileId());
}
// 2. Add a galley.
$sectionEditorSubmission =& $sectionEditorSubmissionDao->getSectionEditorSubmission($article->getId());
$galleys =& $sectionEditorSubmission->getGalleys();
if (empty($galleys)) {
// No galley present -- use copyediting file.
import('classes.file.ArticleFileManager');
$copyeditFile =& $sectionEditorSubmission->getFileBySignoffType('SIGNOFF_COPYEDITING_INITIAL');
$fileType = $copyeditFile->getFileType();
$articleFileManager = new ArticleFileManager($article->getId());
$fileId = $articleFileManager->copyPublicFile($copyeditFile->getFilePath(), $fileType);
if (strstr($fileType, 'html')) {
$galley = new ArticleHTMLGalley();
} else {
$galley = new ArticleGalley();
}
$galley->setArticleId($article->getId());
$galley->setFileId($fileId);
$galley->setLocale(Locale::getLocale());
if ($galley->isHTMLGalley()) {
$galley->setLabel('HTML');
} else {
if (strstr($fileType, 'pdf')) {
$galley->setLabel('PDF');
} else {
if (strstr($fileType, 'postscript')) {
$galley->setLabel('Postscript');
} else {
if (strstr($fileType, 'xml')) {
$galley->setLabel('XML');
} else {
$galley->setLabel(Locale::translate('common.untitled'));
}
}
}
}
$galleyDao =& DAORegistry::getDAO('ArticleGalleyDAO');
$galleyDao->insertGalley($galley);
}
$sectionEditorSubmission->setStatus(STATUS_QUEUED);
$sectionEditorSubmissionDao->updateSectionEditorSubmission($sectionEditorSubmission);
}
/**
* Save changes to the galley.
* @return int the galley ID
*/
function execute($fileName = null)
{
import('file.ArticleFileManager');
$articleFileManager = new ArticleFileManager($this->articleId);
$galleyDao =& DAORegistry::getDAO('ArticleGalleyDAO');
$fileName = isset($fileName) ? $fileName : 'galleyFile';
$journal =& Request::getJournal();
if (isset($this->galley)) {
$galley =& $this->galley;
// Upload galley file
if ($articleFileManager->uploadedFileExists($fileName)) {
if ($galley->getFileId()) {
$articleFileManager->uploadPublicFile($fileName, $galley->getFileId());
} else {
$fileId = $articleFileManager->uploadPublicFile($fileName);
$galley->setFileId($fileId);
}
// Update file search index
import('search.ArticleSearchIndex');
ArticleSearchIndex::updateFileIndex($this->articleId, ARTICLE_SEARCH_GALLEY_FILE, $galley->getFileId());
}
if ($articleFileManager->uploadedFileExists('styleFile')) {
// Upload stylesheet file
$styleFileId = $articleFileManager->uploadPublicFile('styleFile', $galley->getStyleFileId());
$galley->setStyleFileId($styleFileId);
} else {
if ($this->getData('deleteStyleFile')) {
// Delete stylesheet file
$styleFile =& $galley->getStyleFile();
if (isset($styleFile)) {
$articleFileManager->deleteFile($styleFile->getFileId());
}
}
}
// Update existing galley
$galley->setLabel($this->getData('label'));
if ($journal->getSetting('enablePublicGalleyId')) {
$galley->setPublicGalleyId($this->getData('publicGalleyId'));
}
$galley->setLocale($this->getData('galleyLocale'));
$galleyDao->updateGalley($galley);
} else {
// Upload galley file
if ($articleFileManager->uploadedFileExists($fileName)) {
$fileType = $articleFileManager->getUploadedFileType($fileName);
$fileId = $articleFileManager->uploadPublicFile($fileName);
// Update file search index
import('search.ArticleSearchIndex');
ArticleSearchIndex::updateFileIndex($this->articleId, ARTICLE_SEARCH_GALLEY_FILE, $fileId);
} else {
$fileId = 0;
}
if (isset($fileType) && strstr($fileType, 'html')) {
// Assume HTML galley
$galley = new ArticleHTMLGalley();
} else {
$galley = new ArticleGalley();
}
$galley->setArticleId($this->articleId);
$galley->setFileId($fileId);
if ($this->getData('label') == null) {
// Generate initial label based on file type
$enablePublicGalleyId = $journal->getSetting('enablePublicGalleyId');
if ($galley->isHTMLGalley()) {
$galley->setLabel('HTML');
if ($enablePublicGalleyId) {
$galley->setPublicGalleyId('html');
}
} else {
if (isset($fileType)) {
if (strstr($fileType, 'pdf')) {
$galley->setLabel('PDF');
if ($enablePublicGalleyId) {
$galley->setPublicgalleyId('pdf');
}
} else {
if (strstr($fileType, 'postscript')) {
$galley->setLabel('PostScript');
if ($enablePublicGalleyId) {
$galley->setPublicgalleyId('ps');
}
} else {
if (strstr($fileType, 'xml')) {
$galley->setLabel('XML');
if ($enablePublicGalleyId) {
$galley->setPublicgalleyId('xml');
}
}
}
}
}
}
if ($galley->getLabel() == null) {
$galley->setLabel(Locale::translate('common.untitled'));
}
} else {
$galley->setLabel($this->getData('label'));
}
$galley->setLocale($this->getData('galleyLocale'));
if ($enablePublicGalleyId) {
// check to make sure the assigned public id doesn't already exist
$publicGalleyId = $galley->getPublicgalleyId();
$suffix = '';
$i = 1;
while ($galleyDao->publicGalleyIdExists($publicGalleyId . $suffix, 0, $galley->getArticleId())) {
$suffix = '_' . $i++;
}
$galley->setPublicgalleyId($publicGalleyId . $suffix);
}
// Insert new galley
$galleyDao->insertGalley($galley);
$this->galleyId = $galley->getId();
}
return $this->galleyId;
}
/**
* Set submission file as galley
*@param $articleId string
*@param $articleFileId string, ID of the file which should be used as galley
*@param $locale string
*/
function setGalley($articleId, $articleFileId, $locale, $fileType)
{
//delete old Galley to set new Galley
$galleyDao =& DAORegistry::getDAO('ArticleGalleyDAO');
$oldGalleys =& $galleyDao->getGalleysByArticle($articleId);
foreach ($oldGalleys as $oldGalley) {
$galleyDao->deleteGalley($oldGalley);
}
if (strstr($fileType, 'html')) {
import('classes.article.ArticleHTMLGalley');
$galley = new ArticleHTMLGalley();
} else {
import('classes.article.ArticleGalley');
$galley = new ArticleGalley();
}
$galley->setArticleId($articleId);
$galley->setFileId($articleFileId);
$galley->setLocale($locale);
if ($galley->isHTMLGalley()) {
$galley->setLabel('HTML');
} else {
if (strstr($fileType, 'pdf')) {
$galley->setLabel('PDF');
} else {
if (strstr($fileType, 'postscript')) {
$galley->setLabel('Postscript');
} else {
if (strstr($fileType, 'xml')) {
$galley->setLabel('XML');
} else {
$galley->setLabel(__('common.untitled'));
}
}
}
}
$galleyDao->insertGalley($galley);
//return $galley;
}
/**
* Internal function to return an ArticleGalley object from a row.
* @param $row array
* @return ArticleGalley
*/
function &_returnGalleyFromRow(&$row)
{
if ($row['html_galley']) {
$galley = new ArticleHTMLGalley();
// HTML-specific settings
$galley->setStyleFileId($row['style_file_id']);
if ($row['style_file_id']) {
$galley->setStyleFile($this->articleFileDao->getArticleFile($row['style_file_id']));
}
// Retrieve images
$images =& $this->getGalleyImages($row['galley_id']);
$galley->setImageFiles($images);
} else {
$galley = new ArticleGalley();
}
$galley->setId($row['galley_id']);
$galley->setPublicGalleyId($row['public_galley_id']);
$galley->setArticleId($row['article_id']);
$galley->setLocale($row['locale']);
$galley->setFileId($row['file_id']);
$galley->setLabel($row['label']);
$galley->setType($row['type']);
$galley->setSequence($row['seq']);
$galley->setViews($row['views']);
// ArticleFile set methods
$galley->setFileName($row['file_name']);
$galley->setOriginalFileName($row['original_file_name']);
$galley->setFileType($row['file_type']);
$galley->setFileSize($row['file_size']);
$galley->setDateModified($this->datetimeFromDB($row['date_modified']));
$galley->setDateUploaded($this->datetimeFromDB($row['date_uploaded']));
//%LP% Fedora set methods (ArticleFile)
$galley->setFedoraPid($row['fedora_pid']);
$galley->setFedoraNamespace($row['fedora_namespace']);
$galley->setFedoraDsid($row['fedora_dsid']);
HookRegistry::call('ArticleGalleyDAO::_returnGalleyFromRow', array(&$galley, &$row));
return $galley;
}