output_editable_field('region_condition_1', $cur_region[7], $edit_region, 10); echo "</font></td></tr>"; } if (strlen($cur_region[8]) > 0 || $edit_region) { echo "<tr><td><font size=\"-1\">Condition 2:</font></td><td><font size=\"-1\">"; output_editable_field('region_condition_2', $cur_region[8], $edit_region, 10); echo "</font></td></tr>"; } if (strlen($cur_region[9]) > 0 || $edit_region) { echo "<tr><td><font size=\"-1\">Condition 3:</font></td><td><font size=\"-1\">"; output_editable_field('region_condition_3', $cur_region[9], $edit_region, 10); echo "</font></td></tr>"; } if (strlen($cur_region[2]) > 0 || $edit_region) { echo "<tr><td><font size=\"-1\">Details:</font></td><td><font size=\"-1\">"; output_editable_field('region_details', $cur_region[2], $edit_region, 10, TRUE); echo "</font></td></tr>"; } echo "</table>"; echo "</font>"; if ($edit_region) { echo "<input type=\"hidden\" name=\"edit_region_id\" value=\"" . $cur_region[0] . "\"><br>"; } echo "</td><td>"; if ($show_region_jobs) { $job = new ns_processing_job(); $job->region_id = $cur_region[0]; $v = $job->get_processing_state_description(FALSE, $sql); echo $v; if (strlen($v) > 0) { echo "<a href=\"view_processing_job.php?job_id=0&experiment_id={$experiment_id}®ion_id=" . $cur_region[0] . "&all_new=1&delete_file_taskbar=1\"><font size=\"-1\">[Delete Images]</font></a> ";
echo $show_errors; ?> " method="post"> <?php if (!$show_errors) { echo "<a href=\"view_hosts_log.php?host_id={$host_id}&limit={$limit}&show_errors=1\">[Show Only Errors]</a>"; } else { echo "<a href=\"view_hosts_log.php?host_id={$host_id}&limit={$limit}&show_errors=0\">[Show All Events]</a>"; } echo "<BR><br>"; echo "Jump to date "; output_editable_field("jump_month", $cur_month, TRUE, 2); echo "/"; output_editable_field("jump_day", $cur_day, TRUE, 2); echo "/"; output_editable_field("jump_year", $cur_year, TRUE, 4); //echo " $cur_hour:$cur_min:$cur_sec"; echo "<input type=\"submit\" name=\"jump_to_time\" value=\"Go\">"; ?> </form><br> <table bgcolor="#555555" cellspacing='0' cellpadding='1'><tr><td> <table cellspacing='0' cellpadding='3' > <tr <?php echo $table_header_color; ?> ><td>Time</td><td>Host</td> <td>Event</td><td> </td></tr> <?php if (sizeof($events) == 0) { echo "<tr><td bgcolor=\"{$table_colors[0][0]}\" colspan=\"3\">(No events in log)</td></tr>";
echo $table_colors[1][0]; ?> " >Final Time Point (Age)</td> <td bgcolor="<?php echo $table_colors[1][1]; ?> " ><input type="checkbox" name="set_end_time_age" value="1"></td> <td bgcolor="<?php echo $table_colors[1][1]; ?> "> <?php $end_age = ($region_end_times[$jobs[0]->region_id] - $region_start_times[$jobs[0]->region_id]) / (60 * 60 * 24); if ($end_age < 0) { $end_age = ''; } output_editable_field("end_age", $end_age, TRUE, 2); ?> days<br><font size="-2">(Leave blank to include all images in analysis)</font> </td></tr> <!-- <tr> <td bgcolor="<?php echo $table_colors[0][1]; ?> " > </td> <td bgcolor="<?php echo $table_colors[0][1]; ?> " ></td> <td bgcolor="<?php echo $table_colors[0][1]; ?>
if ($dev[8] == 1) { echo "<i>" . number_format((-$dev[9] + $current_time) / 60, 1) . " min</i>"; } if ($dev[7] == 1) { echo "(Paused!)"; } if ((int) $dev[11] > 0) { echo "(Preview Requested)"; } } echo "</td>"; echo "\t<td bgcolor=\"{$clrs['1']}\">"; echo output_editable_field("device_incubator[{$device['0']}]", $incubator, TRUE, '10', FALSE); echo "</td>\n"; echo "\t<td bgcolor=\"{$clrs['1']}\">"; echo output_editable_field("device_locations[{$device['0']}]", $device[1], TRUE, '4', FALSE); echo "</td>\n"; echo "\t<td bgcolor=\"{$clrs['1']}\">"; if ($dev[3] != "") { echo "<span title=\"" . ns_clean_up_for_tooltip($dev[3]) . "\">"; echo "<font color=\"red\">(Error)</font>"; echo "</span>"; //echo "<b>Error "; //if ($dev[4] == "1") // echo "(Recognized)"; // else echo "(Unrecognized)"; // echo "</b>:"; //b echo $dev[3]; } if ($device[2] != 1) { echo "<font size=\"-1\">(Missing)</font>";
<tr><td> <tr bgcolor="<?php echo $table_colors[0][0]; ?> "><td> <?php output_editable_field('s_a', '', TRUE, 10); ?> </td><td> <?php output_editable_field('g_a', '', TRUE, 25); ?> </td> <!--<td> //<?php output_editable_field('c_0', '', TRUE, 25); ?> </td> --> <td> </td> </tr><tr><td colspan=3 bgcolor="<?php echo $table_colors[0][0]; ?> "> </td></tr> <tr <?php echo $table_header_color; ?> ><td></td><td></td><td align="right"> <input name="save" type="submit" value="Save"></td></tr> </td> </tr> </table>
echo $table_header_color; ?> align="center">Temperature</td></tr> <?php $row_color = 0; foreach ($device_names as $d) { $row_color = !$row_color; echo "<tr>"; echo "<td bgcolor=\"" . $table_colors[0][$row_color] . "\" valign=\"top\" align=\"center\">\n"; echo "<center><b>" . $device_incubator[$d] . "</b></center>"; echo "</td>"; echo "<td bgcolor=\"" . $table_colors[0][$row_color] . "\" valign=\"top\" align=\"center\">\n"; echo "<center><b>" . $d . "</b> (" . $device_locations[$d] . ")</center>"; echo "</td><td bgcolor=\"" . $table_colors[1][$row_color] . "\" valign=\"top\" align=\"center\">"; if (!$simple_table) { output_editable_field("t_" . $d, $device_temperatures[$d], TRUE); } else { echo $device_temperatures[$d]; } echo "</td></tr>"; } ?> </table> <?php if (!$simple_table) { ?> <input type="submit" name="save" value="Save"><br><br> <?php } ?> </div>
echo "selected"; } ?> >Strain and Conditions 1 and 2</option> <option value = "s123"<?php if ($detail_level == 's123' || $detail_level == '') { echo "selected"; } ?> >Strain And Conditions 1,2,and 3</option></select></td></tr> <?php $c = 0; foreach ($experiment_strains as $strain => $region_id) { echo "<tr><td bgcolor=\"" . $table_colors[$c][0] . "\">{$strain}</td>" . "<td bgcolor=\"" . $table_colors[$c][1] . "\">"; output_editable_field("position_modelZ" . $region_id, $strain_position_models[$strain], true, 30); echo "</td></tr>\n"; $c = !$c; } ?> <?php } ?> <tr><td bgcolor="<?php echo $table_colors[0][0]; ?> " colspan=2> <div align="right"><input name="set_position_models" type="submit" value="Set Position Models" <?php if ($number_of_regions == 0) {
"><td> Modify Existing Group </td> <td> <select name="selected_group_id"> <?php foreach ($group_order as $g) { if ($g == 0) { continue; } echo "<option value=\"" . $experiment_groups[$g][0] . "\">" . $experiment_groups[$g][1] . "</option>\n"; } ?> <BR> <?php output_editable_field('selected_group_name', '', TRUE, 35); ?> </select> </td> <td> <input name="modify" type="submit" value="Modify"> <br> <input name="move_up" type="submit" value="Move up"> <br> <input name="move_down" type="submit" value="Move Down"> <br> <input name="delete" type="submit" value="Delete" onClick="javascript:return confirm('Are you sure you want to delete the specified group?')"> </td> </tr>
} for ($i = 0; $i < sizeof($capture_sample_regions[$capture_sample_id]); $i++) { $current_sample_record = $capture_sample_regions[$capture_sample_id][$i]; $clrs = $table_colors[$i % 2]; $edit = $edit_regions; echo "<tr><td bgcolor=\"{$clrs['0']}\">"; echo output_editable_field("region_{$current_sample_record[0]}_name", $current_sample_record[1], $edit); echo "</td>"; echo "<td bgcolor=\"{$clrs['1']}\">"; echo $capture_sample_regions[$capture_sample_id][$i][4]; echo "</td>"; echo "<td bgcolor=\"{$clrs['0']}\">"; echo "(" . $capture_sample_regions[$capture_sample_id][$i][5] . "," . $capture_sample_regions[$capture_sample_id][$i][6] . ")"; echo "</td>"; echo "<td bgcolor=\"{$clrs['1']}\">"; echo output_editable_field("region_{$current_sample_record[0]}_details", $current_sample_record[2], $edit, ''); echo "</td>"; echo "<td bgcolor=\"{$clrs['0']}\">"; if (!$edit) { echo "<a href=\"manage_masks.php?mask_id={$mask_id}&edit=1\">[Edit]</a>"; } else { echo "<input name=\"save\" type=\"submit\" value=\"Save\"><br>"; echo "<input name=\"cancel\" type=\"submit\" value=\"Cancel\">"; } echo "</center></td></tr>"; } ?> </table></td></tr></table> <a href="manage_masks.php?generate_sample_region_image_info=1&mask_id=<?php echo $mask_id; ?>
echo "<input name=\"move_down\" type=\"submit\" value=\"move down\">\n"; echo "\n</td></tr>"; echo "\n</table>\n</form>\n</td></tr>"; } ?> <tr><td colspan=3 bgcolor="#CCCCCC">New Flag</td></tr> <tr><td> <form action="cluster_configuration.php" method="post"> <table cellspacing=0 cellpadding=0 width="100%"> <tr bgcolor="#CCCCCC"><td> <?php output_editable_field('label_short', '', TRUE, 55); ?> </td><td> <?php output_editable_field('label_long', '', TRUE, 55); ?> </td> <td> <input type="hidden" name="id" value="new"> <input name="new_label" type="submit" value="save"> </td> </tr> </table> </form> </td></tr> </table> </tr></td> </table> <a href="cluster_configuration.php?fix_flags=1">[Reset Flag order]</a>
echo "</td></tr><tr><td>Experiment T:</td><td>"; output_editable_field('5_' . $column_name . '_' . $row, ns_slash($experiment_temperature_positions[$column_name][$row]), TRUE, 20, FALSE); echo "</td></tr><tr><td>Food Source:</td><td>"; output_editable_field('6_' . $column_name . '_' . $row, ns_slash($food_source_positions[$column_name][$row]), TRUE, 20, FALSE); } if (!$only_strain) { echo "</td></tr><tr><td>Environment:</td><td>"; output_editable_field('7_' . $column_name . '_' . $row, ns_slash($environment_condition_positions[$column_name][$row]), TRUE, 20, FALSE); } if (!$only_strain && !$only_experiment_conditions) { echo "</td></tr><tr><td>Condition 1:</td><td>"; output_editable_field('1_' . $column_name . '_' . $row, ns_slash($strain_condition_1_positions[$column_name][$row]), TRUE, 20, FALSE); echo "</td></tr><tr><td>Condition 2:</td><td>"; output_editable_field('2_' . $column_name . '_' . $row, ns_slash($strain_condition_2_positions[$column_name][$row]), TRUE, 20, FALSE); echo "</td></tr><tr><td>Condition 3:</td><td>"; output_editable_field('3_' . $column_name . '_' . $row, ns_slash($strain_condition_3_positions[$column_name][$row]), TRUE, 20, FALSE); } echo "</td></tr></table>"; echo "</td></tr>"; if ($row_color) { $row_color = 0; } else { $row_color = 1; } } echo "</table></td>"; } ?> </tr> </table>
echo "<input type=\"checkbox\" name=\"rc" . $regs[$j][0] . "\""; if ($regs[$j][3]) { echo " checked"; } echo " value = \"1\">"; echo "\n</td><td bgcolor=\"{$clrs['0']}\" valign=\"top\" width=\"200\"><font size=\"-1\">"; echo "<table border=0 cellpadding = 1 cellspacing = 0><tr><td>"; echo "Strain:</td><td>"; output_editable_field('rs' . $regs[$j][0], ns_slash($regs[$j][5]), TRUE, 20, FALSE); echo "</td></tr><tr><td>Condition 1:</td><td>"; output_editable_field('r1' . $regs[$j][0], ns_slash($regs[$j][9]), TRUE, 20, FALSE); echo "</td></tr><tr><td>Condition 2:</td><td>"; output_editable_field('r2' . $regs[$j][0], ns_slash($regs[$j][10]), TRUE, 20, FALSE); echo "</td></tr></table>"; echo "Details: "; output_editable_field('rd' . $regs[$j][0], ns_slash($regs[$j][2]), TRUE, 30, TRUE, $det_height); // echo $regs[$j][11]; echo "\n</font>"; echo "Reason Censored: "; echo "<select name=\"rr" . $regs[$j][0] . "\" size=1>\n"; echo "<option value = \"none\" " . ($regs[$j][3] == 0 ? 'selected="selected"' : '') . ">None</option>\n"; echo "<option value=\"condensation\" " . ($regs[$j][4] == 'condensation' ? 'selected="selected"' : '') . ">Fogging</option>\n"; echo "<option value= \"contamination\" " . ($regs[$j][4] == 'contamination' ? 'selected="selected"' : '') . ">Contamination</option>\n"; echo "<option value=\"desiccation\" " . ($regs[$j][4] == 'desiccation' ? 'selected=1' : '') . ">Desiccation</option>\n"; echo "<option value=\"starved\" " . ($regs[$j][4] == 'starved' ? 'selected=1' : '') . ">Starved</option>\n"; echo "<option value=\"larvae\" " . ($regs[$j][4] == 'larvae' ? 'selected=1' : '') . ">Larvae</option>\n"; echo "<option value=\"empty\" " . ($regs[$j][4] == 'empty' ? 'selected=1' : '') . ">Empty</option>\n"; echo "<option value=\"other\" " . ($regs[$j][3] != 0 && $regs[$j][4] != 'condensation' && $regs[$j][4] != 'contamination' && $regs[$j][4] != 'desiccation' && $regs[$j][4] != 'empty' && $regs[$j][4] != 'larvae' && $regs[$j][4] != 'starved' ? 'selected="selected"' : '') . ">Other</option>\n"; echo "</select>\n"; echo "<br><br></td><td bgcolor=\"{$clrs['1']}\" valign=\"top\" align=\"right\">\n"; echo "<input name=\"save\" type=\"submit\" value=\"Save\"><br>\n";
echo ">Do not Delete</option>\n<option value= \"1\" "; if ($delete_captured_after_mask ) echo "selected"; echo ">Delete</option>\n</select><br>"; echo "</td></tr>"; echo "<tr><td><font size=\"-1\">Number of images used to detect stationary plate features<br>(0 for automatic)</font></td><td>"; output_editable_field("number_stationary_mask",$number_stationary_mask,TRUE,2); echo "</td></tr>"; echo "<tr><td><font size=\"-1\">Maximum Number of Worms per Plate</font></td><td>"; output_editable_field("max_worms_per_plate",$max_worms_per_plate,TRUE,2); echo "</td></tr>";*/ echo "</table>"; } output_editable_field("comments", $experiment[2], $edit, 20, TRUE); echo "</td>"; echo "<td bgcolor=\"{$clrs['1']}\" valign='top'><center>"; if ($experiment[5] > $current_time) { echo '<b><font size = "+1">' . $device_count[$experiment_id] . "</font></b>"; } else { echo $device_count[$experiment_id]; } echo "</center></td>"; echo "<td bgcolor=\"{$clrs['0']}\" valign='top' nowrap><center><font size=\"-1\">"; if ($experiment[5] < $current_time) { echo "The experiment ran for " . round(($experiment[5] - $experiment[4]) / 60.0 / 60.0 / 24.0 * 10) / 10 . " days<br>"; echo "Started: " . format_time($experiment[4]) . "<br>"; echo "Finished: " . format_time($experiment[5]) . "<br> "; } else { echo "Started: " . format_time($experiment[4]) . "<br>";