foreach ($strain_info as $id => $d) {
if ($d[0] != $known_strains_by_id[$id]) {
// var_dump($known_strains_by_id);
// echo "<BR>$id<br>";
$query = "UPDATE sample_region_image_info as r, capture_samples as s " . "SET r.strain = '" . mysql_real_escape_string($d[0]) . "' WHERE r.strain='" . mysql_real_escape_string($known_strains_by_id[$id]) . "' AND r.sample_id = s.id AND s.experiment_id = {$experiment_id}";
$sql->send_query($query);
}
}
}
}
$next_qs = "experiment_id={$experiment_id}&strain={$strain}";
if ($reload) {
header("Location: strain_aliases.php?{$next_qs}\n\n");
die('');
}
display_worm_page_header("Strain Information");
echo "<span class=\"style1\">";
if ($experiment_id != '') {
echo "Viewing strains used in experiment {$experiment_name}";
} else {
if ($strain_name != '') {
echo "Viewing information for strain {$strain_name}";
} else {
echo "Viewing all strain information";
}
}
echo "</span> <br><br>";
echo '<form action="strain_aliases.php?&' . $next_qs . '" method="post">';
echo "<input name=\"edit\" type=\"hidden\" value=\"1\">";
echo "<table align=\"center\" border=0 cellspacing=1 cellpadding=1>\n";
echo "<tr><td bgcolor=\"#000000\">\n";
$strain_condition .= " AND i.strain_condition_2 = '" . $st[2] . "'";
}
}
//echo $region_id . ": " . $model . "<br>";
$query = " UPDATE sample_region_image_info as i, capture_samples as s SET worm_detection_model ='{$model}' WHERE {$strain_condition} AND i.sample_id = s.id AND s.experiment_id = {$experiment_id}";
//echo $query . "<br>";//
$sql->send_query($query);
}
// die("");
}
}
// die("");
header("Location: manage_experiment_analysis_configuration.php?{$query_parameters}\n\n");
}
$back_url = "manage_samples.php?experiment_id={$experiment_id}";
display_worm_page_header($page_title, "<a href=\"{$back_url}\">[Back to {$experiment_name}]</a>");
//var_dump($control_strain_hash);
} catch (ns_exception $ex) {
die("Error: " . $ex->text);
}
?>
<table cellspacing = 5 cellpadding=0 border=0 align="center"><tr><td valign="top">
<form action="manage_experiment_analysis_configuration.php?<?php
echo $query_parameters . "&set_denoising_options=1";
?>
" method="post">
<table align="center" border="0" cellpadding="0" cellspacing="1" bgcolor="#000000"><tr><td><table border="0" cellpadding="4" cellspacing="0" width="100%"><tr <?php
$sql->get_row($query, $res);
if (sizeof($res) > 0) {
$query = "UPDATE experiment_groups SET group_order=" . $res[0][1] . " WHERE group_id = {$id}";
//echo $query . "<br>";
$sql->send_query($query);
$query = "UPDATE experiment_groups SET group_order=" . $cur_order . " WHERE group_id = " . $res[0][0];
//die($query);
$sql->send_query($query);
}
$reload = TRUE;
}
if ($reload) {
header("Location: manage_experiment_groups.php\n\n");
die("");
}
display_worm_page_header("Experiment Group Management");
echo "<table align=\"center\" border=0 cellspacing=1 cellpadding=1>\n";
echo "<tr><td bgcolor=\"#000000\">\n";
echo "<table border=0 bgcolor=\"#FFFFFF\" cellspacing=0 cellpadding=3>\n";
for ($i = 0; $i < sizeof($constants); $i++) {
echo "<tr><td>";
echo '<form action="cluster_configuration.php" method="post">';
echo "\n<table cellspacing=0 cellpadding=0 width=\"100%\">\n";
echo "<tr><td bgcolor=\"{$table_colors[$i % 2][0]}\" width=400>\n";
output_editable_field('k', $constants[$i][1], TRUE, 55);
echo "\n</td><td bgcolor=\"{$table_colors[$i % 2][1]}\" width = 400>\n";
output_editable_field('v', $constants[$i][2], TRUE, 55);
echo "\n</td><td bgcolor=\"{$table_colors[$i % 2][0]}\">\n";
echo "<input type=\"hidden\" name=\"id\" value=\"{$constants[$i][0]}\">";
echo "<input name=\"save\" type=\"submit\" value=\"save\">\n";
echo "<input name=\"delete\" type=\"submit\" value=\"delete\">\n";
$storyboard_info = "<table><tr><td>Storyboard built on </td><td>" . format_time($storyboard_build_timestamp) . "</td></tr>";
if ($latest_rebuild > $storyboard_build_timestamp) {
$storyboard_info .= "<tr><td></td><td><b>(Out of date!)</b></td></tr>";
}
$storyboard_info .= "<tr><td>Up to time </td><td>" . format_time($storyboard_last_timepoint) . "</td></tr>";
$storyboard_info .= "</table>";
// $storyboard_info .= $latest_rebuild;
}
} catch (ns_exception $e) {
die($e->text);
}
if ($refresh_page === TRUE) {
header("Location: manage_samples.php?experiment_id={$experiment_id}&{$region_job_query_string}\n\n");
die("");
}
display_worm_page_header($experiment->name . " samples");
?>
<span class="style1">Experiment-wide operations</span>
<table border="0" cellpadding="0" cellspacing="1" bgcolor="#000000"><tr><td>
<table border="0" cellpadding="0" cellspacing="0">
<tr>
<td bgcolor="<?php
echo $table_colors[0][0];
?>
" valign="top">
<b>Configuration</b><br>
<?php
//echo "<table border=0 cellpadding=4 cellspacing=0><tr><td valign=\"top\" bgcolor=\"{$table_colors[0][0]}\">";
echo "<a href=\"manage_experiment_analysis_configuration.php?experiment_id={$experiment_id}\">[Configure Machine Analysis]</a><br>";
?>
$query .= "region_info_id = {$region_id}";
} else {
$query .= "id = {$region_image_id}";
}
if ($sort_forwards) {
$query .= " ORDER BY capture_time ASC";
} else {
$query .= " ORDER BY capture_time DESC";
}
$sql->get_row($query, $region_images);
$job_offset = 5;
$page_title = $experiment_name . "::" . $sample_name . "::" . $region_name;
} catch (ns_exception $ex) {
die($ex->text);
}
display_worm_page_header($page_title, "<a href=\"manage_samples.php?experiment_id={$experiment_id}\">[Back to Experiment Samples]</a>");
if ($sort_forwards) {
echo "<a href=\"ns_view_region_images.php?sort_forwards=0®ion_id={$region_id}&experiment_id={$experiment_id}\">[Reverse order by time]</a>";
} else {
echo "<a href=\"ns_view_region_images.php?sort_forwards=1®ion_id={$region_id}&experiment_id={$experiment_id}\">[Order by time]</a>";
}
$id1 = $ns_processing_tasks['ns_process_add_to_training_set'];
$id2 = $ns_processing_tasks['ns_process_analyze_mask'];
$id3 = $ns_processing_tasks['ns_process_compile_video'];
$id4 = $ns_processing_tasks['ns_process_remove_problem_areas'];
if (sizeof($region_images) == 0) {
echo "(No region images available)";
} else {
?>
<table border="0" cellpadding="0" cellspacing="1" bgcolor="#000000"><tr><td>
<table border="0" cellpadding="4" cellspacing="0" width="100%">
$view_processing_taskbar = FALSE;
$view_video_taskbar = FALSE;
$view_boundaries_taskbar = FALSE;
}*/
if ($job_type != $IS_REGION) {
$view_boundaries_taskbar = FALSE;
}
//die("$view_delete_image_taskbar);
$query = "SELECT id, name, ip, last_ping, comments, long_term_storage_enabled, port FROM hosts ORDER BY name DESC";
$sql->get_row($query, $hosts);
$hosts[sizeof($hosts)] = array(0, "(Any)");
if ($jobs[0]->experiment_id != 0) {
display_worm_page_header($page_title, "<a href=\"{$back_url}\">[Back to {$jobs[0]->experiment_name} Samples]</a>");
} else {
display_worm_page_header($page_title);
}
?>
<span class="style1">Job Target(s):</span><br><?php
echo $target_text;
?>
<?php
if ($job_type != $IS_EXPERIMENT) {
if ($job_type == $IS_SAMPLE) {
$sub = "Samples";
} else {
$sub = "Regions";
}
<?php
require_once "worm_environment.php";
require_once "ns_processing_job.php";
try {
display_worm_page_header("View Sample Videos");
$sample_str = $query_string['samples'];
$sample_ids = explode('o', $query_string['samples']);
$sample_names = array();
$sample_names_short = array();
$sample_image_ids = array();
$sample_video_ids = array();
if ($_POST['censor'] != '') {
$query = "UPDATE capture_samples SET censored=1 WHERE id = " . (int) $_POST['sample_id'];
// die($query);
$sql->send_query($query);
}
if ($_POST['uncensor'] != '') {
$query = "UPDATE capture_samples SET censored=0 WHERE id = " . (int) $_POST['sample_id'];
$sql->send_query($query);
}
if (sizeof($sample_ids) == 0) {
throw new ns_exception("No samples specified");
}
for ($i = 0; $i < sizeof($sample_ids); $i++) {
$query = "SELECT s.name,e.name, s.op0_video_id, s.censored FROM capture_samples as s, experiments as e WHERE s.id = " . $sample_ids[$i] . " AND s.experiment_id = e.id";
$sql->get_row($query, $res);
if (sizeof($res) == 0) {
throw new ns_exception("Could not load info for sample " . $sample_ids[$i]);
}
$sample_names[$i] = $res[0][1] . "::" . $res[0][0];
<?php
require_once 'worm_environment.php';
require_once 'ns_dir.php';
//require_once('ns_external_interface.php');
require_once 'ns_experiment.php';
require_once 'ns_processing_job.php';
$experiment_id = @$query_string['experiment_id'];
$query = "SELECT name FROM experiments WHERE id = {$experiment_id}";
$sql->get_value($query, $experiment_name);
display_worm_page_header($experiment_name . " Image Analysis Status");
?>
<span class="style1">Mask Application:</span><br>
<?php
$query = "SELECT a.name, s.sample_id, COUNT(DISTINCT s.id),COUNT(DISTINCT s.image_id), SUM(s.censored>0), SUM(s.problem>0), SUM(s.currently_being_processed>0),SUM(s.mask_applied) FROM captured_images as s, capture_samples as a WHERE s.sample_id = a.id AND a.experiment_id = {$experiment_id} GROUP BY s.sample_id ORDER BY a.name";
$sql->get_row($query, $sample_info);
$res = array();
$empty = array();
$done = array();
foreach ($sample_info as $d) {
if ($d[3] != 0) {
$p = $d[7] / $d[2];
if ($p < 0.95) {
array_push($res, array($d[0], floor($p * 100)));
} else {
array_push($done, $d[0]);
}
} else {
arrayy_push($empty, $d[0]);
}
}
// $query = "UNLOCK TABLES"; // $sql->send_query($query);
// $refresh_page = TRUE;
//die("");
}
}
}
//die('');
if ($refresh_page === TRUE) {
$s = $only_strain ? "&only_strain=1" : "";
header("Location: plate_labeling.php?experiment_id={$experiment_id}{$s}\n\n");
die("");
}
} catch (ns_exception $e) {
die($e->text);
}
display_worm_page_header($experiment->name . " Plate Metadata for " . $experiment_name);
?>
<form action="<?php
echo "plate_labeling.php?experiment_id={$experiment_id}";
if ($only_strain) {
echo "&only_strain=1";
}
if ($only_experiment_conditions) {
echo "&only_experiment_conditions=1";
}
?>
" method="post">
<table border = 0 cellspacing = 0 cellpadding="0" width="100%"><TR><TD>
<span class="style1">Experiment Metadata by Plate Position</span><br>
<?php
if ($only_strain == 1 || $only_experiment_conditions == 1) {
//_die($query);
$sql->get_row($query, $current_events);
$query = "{$info} WHERE {$experiment_mysql} capture_schedule.time_at_start != 0 AND capture_schedule.time_at_finish = 0 AND capture_schedule.scheduled_time < " . (time() - 60 * 4) . " {$postfix_ASC}";
$sql->get_row($query, $delayed_events);
if ($show_past[1] - $show_past[0] > 0) {
$query = "{$info} WHERE {$experiment_mysql} capture_schedule.time_at_finish != 0 {$postfix_DESC} ";
$query .= "LIMIT " . $show_past[0] . "," . $show_past[1];
$sql->get_row($query, $completed_events);
// die("size: " . sizeof($completed_events));
}
$text = "Image Acquisition Schedule for ";
if (isset($device_name)) {
$text .= $device_name . ": ";
}
$text .= $experiment->name;
display_worm_page_header($text);
?>
<!--<a href="#Current">[Current]</a> <a href="#future">[Future]</a> <a href="#completed">[Completed]<br><br>-->
</a>
<?php
/*
echo "<b>Inspect Single Experiment</b><br>\n";
echo "<a href=\"view_scanner_schedule.php?experiment_id=&\">[all]</a> ";
for ($i = 0; $i < sizeof($experiments); $i++){
if ($experiments[$i][2] == '0')
echo out_link($experiments[$i][0]) . "[" . display_hash_name($experiments[$i][0],$experiment_names)."]</a> ";
}
echo "<br><b>Inspect Single Device</b><br>\n";
function output_nav_links()
{
global $reached_end, $start_position, $count, $experiment_id, $show_images;
if ($reached_end) {
return;
}
if ($start_position != 0) {
echo "<a href=\"experiment_overview.php?experiment_id={$experiment_id}&show_images=" . ($show_images ? "1" : "0") . "&start_position=";
echo $start_position - $count;
echo "&count=" . $count . "\">[Previous]</a>";
}
echo "<a href=\"experiment_overview.php?experiment_id={$experiment_id}&show_images=" . ($show_images ? "1" : "0") . "&start_position=";
echo $start_position + $count;
echo "&count=" . $count . "\">[Next]</a>";
}
display_worm_page_header($experiment->name . " Overview");
?>
<!--
<video src="/image_server_web/long_term_storage/partition_000/2010_01_13_daf16_uno/video/regions/2010_01_13_daf16_uno=cube_a=3=.m4v" controls="controls" onerror="failed(event)">No video support</video>
-->
<span class="style1">Experiment Samples</span><br>
Displaying <?php
echo "(";
echo $start_position;
echo " - ";
echo $start_position + $count;
echo ") / ";
echo sizeof($experiment->samples);
?>
<br>
<?php
require_once "ns_processing_job.php";
require_once "worm_environment.php";
display_worm_page_header("Cluster Activity");
$current_device_cutoff = 60 * 10;
$query = "SELECT id, name, last_ping,software_version_major,software_version_minor,software_version_compile FROM hosts ORDER BY name";
$sql->get_row($query, $hosts);
for ($i = 0; $i < sizeof($hosts); $i++) {
$query = "SELECT time, event, processing_job_op FROM host_event_log WHERE host_id = " . $hosts[$i][0] . " ORDER BY time DESC LIMIT 2";
$sql->get_row($query, $host_events[$i]);
}
?>
<span class="style1">Capture/Processing Nodes and Imaging Devices</span>
<form action="view_hosts_and_devices.php" method="post">
<table bgcolor="#555555" cellspacing='0' cellpadding='1'><tr><td>
<table cellspacing='0' cellpadding='3' >
<tr <?php
echo $table_header_color;
?>
><td>Host Name</td>
<td>Last Action</td>
<td>Last Ping</td>
<?php
$cur_time = ns_current_time();
$k = 0;
for ($i = 0; $i < sizeof($hosts); $i++) {
$clrs = $table_colors[$i % 2];
$edit_host = $host_id == $hosts[$i][0];
echo "<tr><td bgcolor=\"{$clrs['0']}\">";
$current = $cur_time - $hosts[$i][2] < $current_device_cutoff;
$n = $loc[$i][0];
if (!isset($strain_experiment[$n])) {
$strain_experiment[$n] = array();
$strain_experiment_id[$n] = array();
}
array_push($strain_experiment[$n], $loc[$i][2]);
array_push($strain_experiment_id[$n], $loc[$i][1]);
$query = "SELECT genotype FROM strain_aliases WHERE strain = \"" . $n . "\"";
$sql->get_row($query, $l);
if (sizeof($l) == 0) {
$genotypes[$n] == "";
} else {
$genotypes[$n] = $l[0][0];
}
}
display_worm_page_header("Locate Strains and Genotypes in Database");
?>
<table border=0 bgcolor="#000000" cellspacing=1 cellpadding=0 align="center"><tr><td>
<table border=0 bgcolor="#FFFFFF" cellspacing=0 cellpadding=3>
<tr><td colspan = 2 bgcolor="#FFFFFF">
<?php
echo "<table border=0>";
foreach ($strain_experiment as $strain => $experiment) {
echo "<tr><td colspan = 2, bgcolor = \"#CCCCCC\" >";
if ($show_strain) {
echo $strain . " ";
}
echo "<i>" . $genotypes[$strain] . "</i></td></tr>";
if ($show_experiment) {
for ($i = 0; $i < sizeof($experiment); $i++) {
echo "<tr><td width = 50> </td><td><a href=\"manage_samples.php?experiment_id=" . $strain_experiment_id[$strain][$i] . "\">" . $experiment[$i] . "</a></td></tr>";
foreach ($experiments as $file_sizes) {
$file_size_totals[0] += $file_sizes[8];
$file_size_totals[1] += $file_sizes[9];
$file_size_totals[2] += $file_sizes[10];
$file_size_totals[3] += $file_sizes[11];
$file_size_totals[4] += $file_sizes[12];
$file_size_totals[5] += $file_sizes[13];
}
$ALL_EXPERIMENTS_ID = 99999999;
$experiments[sizeof($experiments)] = array($ALL_EXPERIMENTS_ID, "All Experiments", "[Automatically Generated Data for All Experiments]", 0, 0, 0, 0, 0, $file_size_totals[0], $file_size_totals[1], $file_size_totals[2], $file_size_totals[3], $file_size_totals[4], $file_size_totals[5]);
$total_data_rate = 0;
$current_time = ns_current_time();
} catch (ns_exception $e) {
die("Error: " . $e->text);
}
display_worm_page_header("Home", "", TRUE);
?>
<span class="style1">Welcome to the Lifespan Machine!</span><br><br>
Forward any questions to <?php
echo $contact_name . " at <a href=\"mailto:" . $contact_email . "\">{$contact_email}</a>";
if ($contact_phone != '') {
echo ", " . $contact_phone;
}
?>
<br>
<table width="100%"><TR><TD valign="top">
<span class="style1">Image Acquisition</span><br>
<table bgcolor="#555555" cellspacing='0' cellpadding='1' width="100%"><tr><td>
<table cellspacing='0' cellpadding='3' width="100%">
<tr <?php
echo $table_header_color;
$sql->get_row($query, $devices);
foreach ($devices as $d) {
$device_names[$d[0]] = $d[0];
$device_locations[$d[0]] = $d[2];
$device_incubator[$d[0]] = $d[3];
$incubators[$d[3]] = 1;
}
foreach ($devices as $d) {
$query = "SELECT experiment_temperature FROM sample_region_image_info WHERE sample_id = " . $d[1] . " LIMIT 1";
$sql->get_row($query, $temperatures);
$device_temperatures[$d[0]] = $temperatures[0][0];
}
} catch (ns_exception $e) {
die($e->text);
}
display_worm_page_header($experiment->name . " Device Temperatures for " . $experiment_name);
?>
<div align="center">
<form action="<?php
echo "device_temperatures.php?experiment_id={$experiment_id}";
?>
" method="post">
<table border="0" cellpadding="0" cellspacing="1" bgcolor="#000000">
<tr>
<?php
echo "<td {$table_header_color} align=\"center\"><b>Incubator</b></td>";
?>
<td <?php
echo $table_header_color;
if ($j >= $numflags) {
$str .= "<BR>";
echo $str;
var_dump($flags);
die("<BR>A loop was detected in the flag ordering: {$j}");
}
$str .= $sorted_flags[$i][0] . "<BR>";
array_push($ordered_flags, $sorted_flags[$i]);
$j++;
}
/*echo "FIRST: ". $flags[$root_flag_index][0] . "<BR>";
var_dump($sorted_flags);
echo "<BR><BR>";
var_dump($ordered_flags);
die("");*/
display_worm_page_header("Imaging Cluster Configuration");
?>
<a href="#constants">[Cluster Constants]</a> <a href="#flags">[Animal Annotation Flags]</a><br>
<a name="constants">
<H2>Cluster Constants</H2>
<?php
echo "<table align=\"center\" border=0 cellspacing=1 cellpadding=1>\n";
echo "<tr><td bgcolor=\"#000000\">\n";
echo "<table border=0 bgcolor=\"#FFFFFF\" cellspacing=0 cellpadding=3>\n";
for ($i = 0; $i < sizeof($constants); $i++) {
echo "<tr><td>";
echo '<form action="cluster_configuration.php" method="post">';
echo "\n<table cellspacing=0 cellpadding=0 width=\"100%\">\n";
echo "<tr><td bgcolor=\"{$table_colors[$i % 2][0]}\" width=400>\n";
output_editable_field('k', $constants[$i][1], TRUE, 55);
echo "\n</td><td bgcolor=\"{$table_colors[$i % 2][1]}\" width = 400>\n";
<?php
class ns_stat
{
public $mean, $var, $count;
}
require_once "worm_environment.php";
require_once "ns_processing_job.php";
display_worm_page_header("Cluster Throughput Statistics");
$query = "SELECT id, name, last_ping,software_version_major,software_version_minor,software_version_compile FROM hosts WHERE last_ping > " . ns_current_time() . " - 600 ORDER BY name";
$sql->get_row($query, $hosts);
$stats = array();
for ($i = 0; $i < sizeof($hosts); $i++) {
$query = "SELECT operation,mean,variance,count FROM performance_statistics WHERE host_id = " . $hosts[$i][0] . " ORDER BY operation";
$sql->get_row($query, $stats[$i]);
}
$host_stats = array();
$host_total_stats = array();
for ($i = 0; $i < sizeof($hosts); $i++) {
$host_stats[$i] = array();
for ($j = 0; $j < sizeof($stats[$i]); $j++) {
$host_stats[$i][(int) $stats[$i][$j][0]] = new ns_stat();
$host_stats[$i][(int) $stats[$i][$j][0]]->mean = $stats[$i][$j][1];
$host_stats[$i][(int) $stats[$i][$j][0]]->var = $stats[$i][$j][2];
$host_stats[$i][(int) $stats[$i][$j][0]]->count = $stats[$i][$j][3];
}
}
//var_dump($host_stats[0]);
$operations_specified = array();
foreach ($stats as $s) {
foreach ($s as $sa) {
$sql->get_row($query, $unclaimed_masks);
if ($_POST['save'] != '') {
foreach ($capture_sample_names as $j => $k) {
//echo $j;
for ($i = 0; $i < sizeof($capture_sample_regions[$j]); $i++) {
$region_id = $capture_sample_regions[$j][$i][0];
$name = ns_slash($_POST["region_{$region_id}_name"]);
$details = ns_slash($_POST["region_{$region_id}_details"]);
$query = "UPDATE sample_region_image_info SET name='{$name}', details='{$details}' WHERE id={$region_id}";
$sql->send_query($query);
}
}
header("Location: manage_masks.php?mask_id={$mask_id}\n\n");
die("");
}
display_worm_page_header("Manage Masks");
} catch (ns_exception $ex) {
die("Error: " . $ex->text);
}
?>
<?php
if ($mask_id != 0) {
?>
<span class="style1">Mask Information</span>
<?php
if ($vis_message != '') {
echo '<BR><br><b>' . $vis_message . '</b><br><BR>';
}
?>
$device_in_inventory[$device_inventory_q[$i][0]] = 1;
$device_incubators[$device_inventory_q[$i][0]] = $device_inventory_q[$i][2];
}
for ($i = 0; $i < sizeof($hosts); $i++) {
$device_map[$hosts[$i][0]] = array();
}
for ($i = 0; $i < sizeof($devices); $i++) {
array_push($device_map[$devices[$i][0]], $devices[$i]);
}
$unregistered_device_inventory = array();
foreach ($devices_identified as $name => $info) {
if ($info == 1) {
array_push($unregistered_device_inventory, array($name, "", 1));
}
}
display_worm_page_header("Hosts and Devices", "<a href=\"view_experiments.php\">[Back to Experiment Index]</a>", TRUE);
?>
<table border="0" cellspacing="15"><TR><TD valign="top">
<form action="view_hosts_and_devices.php?<?php
echo "show_host_nodes=" . ($show_host_nodes ? "1" : "0");
?>
" method="post">
<span class="style1">Image Capture and Processing Servers</span><br>
<table border = 0><TR><td width="100%">
<?php
if ($show_host_nodes) {
echo "<a href=\"view_hosts_and_devices.php?show_host_nodes=0\">[Hide Individual Nodes]</a>";
} else {
echo "<a href=\"view_hosts_and_devices.php?show_host_nodes=1\">[Show Individual Nodes]</a>";
}
?>
$query = "COMMIT";
$sql->send_query($query);
$refresh = TRUE;
}
$show_details_id = $query_string['show_details_id'];
if ($refresh) {
header("Location: manage_file_deletion_jobs.php\n\n");
die("");
}
$query = "SELECT id, confirmed, parent_job_id FROM delete_file_jobs ORDER BY confirmed ASC";
$sql->get_row($query, $jobs);
for ($i = 0; $i < sizeof($jobs); $i++) {
$query = "SELECT relative_directory,filename FROM delete_file_specifications WHERE delete_job_id=" . $jobs[$i][0];
$sql->get_row($query, $job_specifications[$i]);
}
display_worm_page_header("Manage File Deletion Jobs");
?>
<table border=0 bgcolor="#000000" cellspacing=1 cellpadding=0 align="center"><tr><td>
<table border=0 bgcolor="#FFFFFF" cellspacing=0 cellpadding=3>
<tr><td colspan = 2<?php
echo $table_header_color;
?>
>File Deletion Jobs Pending Confirmation<br>
<form method="post" action="manage_file_deletion_jobs.php">
<?php
if (sizeof($jobs) > 0) {
?>
<input name="dismiss_all" type="submit" value="Dismiss All Deletion Requests" onClick="javascript:return confirm('Are you sure you wish to dismiss all requests?')"><?php
}
?>
</form>
echo " image could not be displayed because " . $image_problem . ".<br>";
display_worm_page_footer();
die("");
} else {
if ($redirect == "1") {
header("Location: {$image_url}\n\n");
die("");
}
display_worm_page_header("View Image");
echo "<center>";
if ($video_image_id) {
echo "<br>(Defaulting to still image because {$video_problem})<br><br>";
}
echo "<iframe src=\"{$image_url}\" width=\"{$width}\" height=\"{$height}\"></iframe>";
echo "<br><a href=\"{$image_url}\">[View Full Size Image]</a>";
echo "</center>";
display_worm_page_footer();
}
} else {
if ($redirect == "1") {
echo "<html><head></head><body>";
} else {
display_worm_page_header("View Image");
}
echo "<video src=\"{$video_url}\" controls=\"controls\" width=\"{$width}\" height=\"{$height}\" onerror=\"report_video_failure(event)\">This web browser does not support the video tag.</video>";
if ($redirect == "1") {
echo "</body></html>";
} else {
display_worm_page_footer();
}
}
foreach ($past as &$f) {
array_push($schedule_past[$device_index[$f[8]]], $f);
}
//$schedule_future[$i]
//echo $query_future . "<br>";
// flush();
// ob_flush();
//$sql->get_row($query_past,$schedule_past[$i]);
//var_dump($devices_per_incubator);
//die("");
$query = "SELECT id,name FROM experiments";
$sql->get_row($query, $exper);
for ($i = 0; $i < sizeof($exper); $i++) {
$exp[$exper[$i][0]] = $exper[$i][1];
}
display_worm_page_header("Imaging Cluster Activity");
?>
<table width="100%">
<TR><td valign="top" align="center" width="50%"><center>
<table bgcolor="#555555" cellspacing='0' cellpadding='1' >
<tr><td>
<table cellspacing='0' cellpadding='3' >
<tr <?php
echo $table_header_color;
?>
><td><b>Scanners</b></td></tr>
<tr>
<td bgcolor="<?php
echo $table_colors[0][0];
?>
">
<?php
require_once "ns_processing_job.php";
require_once "worm_environment.php";
display_worm_page_header("Hosts and Devices", "<a href=\"view_hosts_and_devices.php\">[Back to Hosts and Devices]</a>");
$current_device_cutoff = 60 * 10;
$host_id = $query_string['host_id'];
$event_id = $query_string['event_id'];
$region_id = $query_string['region_id'];
$sample_id = $query_string['sample_id'];
$experiment_id = $query_string['experiment_id'];
$show_errors = $query_string['show_errors'];
$start_time = $query_string['start_time'];
$limit = $query_string['limit'];
if ($_POST['jump_to_time'] != '') {
$query = "SELECT UNIX_TIMESTAMP('" . $_POST['jump_year'] . "-" . $_POST['jump_month'] . "-" . $_POST['jump_day'] . " 23:59:59Ab')";
$sql->get_row($query, $res);
$start_time = $res[0][0];
header("Location: view_hosts_log.php?host_id={$host_id}&start_time=" . $start_time . "&limit=" . $limit . "\n\n");
die("");
}
if ($start_time == 0) {
$start_time = ns_current_time();
}
ns_expand_unix_timestamp($start_time, $cur_min, $cur_hour, $cur_day, $cur_month, $cur_year);
if ($query_string['delete_before'] != '' && $query_string['delete_before'] != 0) {
$query = "DELETE FROM host_event_log WHERE host_id='{$host_id}' AND time <= " . $query_string['delete_before'];
$sql->send_query($query);
}
$samples = array();
if ($experiment_id != '') {
die($ex->text);
}
if ($all_running_experiments == 1) {
$back = "<a href=\"view_experiments.php\">[Back to Experiments]</a>";
} else {
if ($experiment_id != 0) {
$back = "<a href=\"manage_samples.php?experiment_id={$experiment_id}\">[Back to Experiment Samples]</a>";
} else {
if (sizeof($images) != 0) {
$back = "<a href=\"manage_samples.php?experiment_id=" . $images[0][13] . "\">[Back to Experiment Samples]</a>";
} else {
$back = "";
}
}
}
display_worm_page_header($page_title, $back);
if (sizeof($images) == 0) {
echo "(No region images available)";
} else {
if ($stop_time > 0) {
$offset = $stop_time - $start_time;
$forward = $stop_time;
if ($forward > $offset) {
$forward = $offset;
}
//die($forward . " " . $offset);
echo "<a href=\"ns_view_sample_images.php?experiment_id=" . (int) $experiment_id . "&all_running_experiments=" . (int) $all_running_experiments . "&sample_id=" . (int) $sample_id . "&start_time=" . (int) ($start_time + $offset) . "&stop_time=" . (int) ($stop_time + $offset) . "\">[Later Time Points]</a>";
}
//echo $start_time . " ". $stop_time ."<BR>";
?>
<table border="0" cellpadding="0" cellspacing="1" bgcolor="#000000"><tr><td>
