/**
* @param $userid
* @param $headers
* @param $table_csv
* @param array $fields
* @param $parent_chkd_flds
* @param $export_file_name
* @param $debug
* @param null $comment
* @param array $to
*/
public static function do_sendit($userid, $headers, $table_csv, $fields = array(), $parent_chkd_flds, $export_file_name, $comment = null, $to = array(), $debug)
{
global $project_id, $user_rights, $app_title, $lang, $redcap_version; // we could use the global $userid, but we need control of it for setting the user as [CRON], so this is passed in args.
$return_val = false;
$export_type = 0; // this puts all files generated here in the Data Export category in the File Repository
$today = date("Y-m-d_Hi"); //get today for filename
$projTitleShort = substr(str_replace(" ", "", ucwords(preg_replace("/[^a-zA-Z0-9 ]/", "", html_entity_decode($app_title, ENT_QUOTES)))), 0, 20); // shortened project title for filename
$originalFilename = $projTitleShort . "_" . $export_file_name . "_DATA_" . $today . ".csv"; // name the file for storage
$today = date("Y-m-d-H-i-s"); // get today for comment, subsequent processing as needed
$docs_comment_WH = $export_type ? "Data export file created by $userid on $today" : fix_case($export_file_name) . " file created by $userid on $today. $comment"; // unused, but I keep it around just in case
/**
* setup vars for value export logging
*/
$chkd_fields = implode(',', $fields);
/**
* turn on/off exporting per user rights
*/
if (($user_rights['data_export_tool'] || $userid == '[CRON]') && !$debug) {
$table_csv = addBOMtoUTF8($headers . $table_csv);
/**
* Store the file in the file system and log the activity, handle if error
*/
if (!DataExport::storeExportFile($originalFilename, $table_csv, true)) {
log_event("", "redcap_data", "data_export", "", str_replace("'", "", $chkd_fields) . (($parent_chkd_flds == "") ? "" : ", " . str_replace("'", "", $parent_chkd_flds)), "Data Export Failed");
} else {
log_event("", "redcap_data", "data_export", "", str_replace("'", "", $chkd_fields) . (($parent_chkd_flds == "") ? "" : ", " . str_replace("'", "", $parent_chkd_flds)), "Export data for SendIt");
/**
* email file link and download password in two separate emails via REDCap SendIt
*/
$file_info_sql = db_query("SELECT docs_id, docs_size, docs_type FROM redcap_docs WHERE project_id = $project_id ORDER BY docs_id DESC LIMIT 1"); // get required info about the file we just created
if ($file_info_sql) {
$docs_id = db_result($file_info_sql, 0, 'docs_id');
$docs_size = db_result($file_info_sql, 0, 'docs_size');
$docs_type = db_result($file_info_sql, 0, 'docs_type');
}
$yourName = 'PRIORITIZE REDCap';
$expireDays = 3; // set the SendIt to expire in this many days
/**
* $file_location:
* 1 = ephemeral, will be deleted on $expireDate
* 2 = export file, visible only to rights in file repository
*/
$file_location = 2;
$send = 1; // always send download confirmation
$expireDate = date('Y-m-d H:i:s', strtotime("+$expireDays days"));
$expireYear = substr($expireDate, 0, 4);
$expireMonth = substr($expireDate, 5, 2);
$expireDay = substr($expireDate, 8, 2);
$expireHour = substr($expireDate, 11, 2);
$expireMin = substr($expireDate, 14, 2);
// Add entry to sendit_docs table
$query = "INSERT INTO redcap_sendit_docs (doc_name, doc_orig_name, doc_type, doc_size, send_confirmation, expire_date, username,
location, docs_id, date_added)
VALUES ('$originalFilename', '" . prep($originalFilename) . "', '$docs_type', '$docs_size', $send, '$expireDate', '" . prep($userid) . "',
$file_location, $docs_id, '" . NOW . "')";
db_query($query);
$newId = db_insert_id();
$logDescrip = "Send file from file repository (Send-It)";
log_event($query, "redcap_sendit_docs", "MANAGE", $newId, "document_id = $newId", $logDescrip);
// Set email subject
$subject = "[PRIORITIZE] " . $comment;
$subject = html_entity_decode($subject, ENT_QUOTES);
// Set email From address
$from = array('Ken Bergquist' => '*****@*****.**');
// Begin set up of email to send to recipients
$email = new Message();
foreach ($from as $name => $address) {
$email->setFrom($address);
$email->setFromName($name);
}
$email->setSubject($subject);
// Loop through each recipient and send email
foreach ($to as $name => $address) {
// If a non-blank email address
if (trim($address) != '') {
// create key for unique url
$key = strtoupper(substr(uniqid(md5(mt_rand())), 0, 25));
// create password
$pwd = generateRandomHash(8, false, true);
$query = "INSERT INTO redcap_sendit_recipients (email_address, sent_confirmation, download_date, download_count, document_id, guid, pwd)
VALUES ('$address', 0, NULL, 0, $newId, '$key', '" . md5($pwd) . "')";
$q = db_query($query);
// Download URL
$url = APP_PATH_WEBROOT_FULL . 'redcap_v' . $redcap_version . '/SendIt/download.php?' . $key;
// Message from sender
$note = "$comment for $today";
// Get YMD timestamp of the file's expiration time
$expireTimestamp = date('Y-m-d H:i:s', mktime($expireHour, $expireMin, 0, $expireMonth, $expireDay, $expireYear));
// Email body
$body = "<html><body style=\"font-family:Arial;font-size:10pt;\">
$yourName {$lang['sendit_51']} \"$originalFilename\" {$lang['sendit_52']} " .
date('l', mktime($expireHour, $expireMin, 0, $expireMonth, $expireDay, $expireYear)) . ",
" . DateTimeRC::format_ts_from_ymd($expireTimestamp) . "{$lang['period']}
{$lang['sendit_53']}<br><br>
{$lang['sendit_54']}<br>
<a href=\"$url\">$url</a><br><br>
$note
<br>-----------------------------------------------<br>
{$lang['sendit_55']} " . CONSORTIUM_WEBSITE_DOMAIN . ".
</body></html>";
// Construct email and send
$email->setTo($address);
$email->setToName($name);
$email->setBody($body);
if ($email->send()) {
// Now send follow-up email containing password
$bodypass = "******"font-family:Arial;font-size:10pt;\">
{$lang['sendit_50']}<br><br>
$pwd<br><br>
</body></html>";
$email->setSubject("Re: $subject");
$email->setBody($bodypass);
sleep(2); // Hold for a second so that second email somehow doesn't reach the user first
$email->send();
} else {
error_log("ERROR: pid=$project_id: Email to $name <$address> NOT SENT");
}
}
}
}
unset($table_csv);
}
}
public static function storeExportFile($original_filename, $file_content, $archiveFile = false, $dateShiftDates = false)
{
global $edoc_storage_option;
## Create the stored name of the file as it wll be stored in the file system
$stored_name = date('YmdHis') . "_pid" . PROJECT_ID . "_" . generateRandomHash(6) . getFileExt($original_filename, true);
$file_extension = getFileExt($original_filename);
$mime_type = strtolower($file_extension) == 'csv' ? 'application/csv' : 'application/octet-stream';
// If file is UTF-8 encoded, then add BOM
// Do NOT use addBOMtoUTF8() on Stata syntax file (.do) because BOM causes issues in syntax file
if (strtolower($file_extension) != 'do') {
$file_content = addBOMtoUTF8($file_content);
}
// If Gzip enabled, then gzip the file and append filename with .gz extension
list($file_content, $stored_name, $gzipped) = gzip_encode_file($file_content, $stored_name);
// Get file size in bytes
$docs_size = strlen($file_content);
// Add file to file system
if ($edoc_storage_option == '0') {
// Store locally
$fp = fopen(EDOC_PATH . $stored_name, 'w');
if ($fp !== false && fwrite($fp, $file_content) !== false) {
// Close connection
fclose($fp);
} else {
// Send error response
return false;
}
// Add file to S3
} elseif ($edoc_storage_option == '2') {
global $amazon_s3_key, $amazon_s3_secret, $amazon_s3_bucket;
$s3 = new S3($amazon_s3_key, $amazon_s3_secret, SSL);
if (!$s3->putObject($file_content, $amazon_s3_bucket, $stored_name, S3::ACL_PUBLIC_READ_WRITE)) {
// Send error response
return false;
}
} else {
// Store using WebDAV
require_once APP_PATH_CLASSES . "WebdavClient.php";
require APP_PATH_WEBTOOLS . 'webdav/webdav_connection.php';
$wdc = new WebdavClient();
$wdc->set_server($webdav_hostname);
$wdc->set_port($webdav_port);
$wdc->set_ssl($webdav_ssl);
$wdc->set_user($webdav_username);
$wdc->set_pass($webdav_password);
$wdc->set_protocol(1);
// use HTTP/1.1
$wdc->set_debug(false);
// enable debugging?
if (!$wdc->open()) {
// Send error response
return false;
}
if (substr($webdav_path, -1) != '/') {
$webdav_path .= '/';
}
$http_status = $wdc->put($webdav_path . $stored_name, $file_content);
$wdc->close();
}
## Add file info to edocs_metadata table
// If not archiving file in File Repository, then set to be deleted in 1 hour
$delete_time = $archiveFile ? "" : NOW;
// Add to table
$sql = "insert into redcap_edocs_metadata (stored_name, mime_type, doc_name, doc_size, file_extension, project_id, \n\t\t\t\tstored_date, delete_date, gzipped) values ('" . prep($stored_name) . "', '{$mime_type}', '" . prep($original_filename) . "', \n\t\t\t\t'" . prep($docs_size) . "', '" . prep($file_extension) . "', " . PROJECT_ID . ", '" . NOW . "', " . checkNull($delete_time) . ", {$gzipped})";
if (!db_query($sql)) {
// Send error response
return false;
}
// Get edoc_id
$edoc_id = db_insert_id();
## Add to doc_to_edoc table
// Set flag if data is date shifted
$dateShiftFlag = $dateShiftDates ? "DATE_SHIFT" : "";
// Set "comment" in docs table
if (strtolower($file_extension) == 'csv') {
$docs_comment = "Data export file created by " . USERID . " on " . date("Y-m-d-H-i-s");
} else {
if ($file_extension == 'sps') {
$stats_package_name = 'Spss';
} elseif ($file_extension == 'do') {
$stats_package_name = 'Stata';
} else {
$stats_package_name = camelCase($file_extension);
}
$docs_comment = "{$stats_package_name} syntax file created by " . USERID . " on " . date("Y-m-d-H-i-s");
}
// Archive in redcap_docs table
$sql = "INSERT INTO redcap_docs (project_id, docs_name, docs_file, docs_date, docs_size, docs_comment, docs_type, \n\t\t\t\tdocs_rights, export_file, temp) VALUES (" . PROJECT_ID . ", '" . prep($original_filename) . "', NULL, '" . TODAY . "', \n\t\t\t\t'{$docs_size}', '" . prep($docs_comment) . "', '{$mime_type}', " . checkNull($dateShiftFlag) . ", 1, \n\t\t\t\t" . checkNull($archiveFile ? "0" : "1") . ")";
if (db_query($sql)) {
$docs_id = db_insert_id();
// Add to redcap_docs_to_edocs also
$sql = "insert into redcap_docs_to_edocs (docs_id, doc_id) values ({$docs_id}, {$edoc_id})";
db_query($sql);
} else {
// Could not store in table, so remove from edocs_metadata also
db_query("delete from redcap_edocs_metadata where doc_id = {$edoc_id}");
return false;
}
// Return successful response of docs_id from redcap_docs table
return $docs_id;
}
/**
* Created by HCV-TARGET.
* User: kbergqui
* Date: 2/25/14
* Time: 9:02 AM
*/
function create_download_all($Proj, $lang, $project_id, $app_name, $app_title, $super_user, $userid, $headers, $headers_labels, $data_csv, $data_csv_labels, $field_names, $is_child=false, $chkd_flds, $table_pk, $longitudinal, $exportDags=false, $exportSurveyFields=false) {
$dagEnum = '';
$do_remove_identifiers = false;
$do_date_shift = false;
// Retrieve project data (raw & labels) and headers in CSV format
//list ($headers, $headers_labels, $data_csv, $data_csv_labels, $field_names)
// = fetchDataCsv($chkd_flds, $parent_chkd_flds, false, $do_hash, $do_remove_identifiers, $useStandardCodes, $useStandardCodeDataConversion, $standardId, $standardCodeLookup, $useFieldNames, $exportDags, $exportSurveyFields, $exportSurveyFields);
// Log the event
//log_event("", "redcap_data", "data_export", "", str_replace("'", "", $chkd_flds) . (($parent_chkd_flds == "") ? "" : ", " . str_replace("'", "", $parent_chkd_flds)), "Export data");
############################################################
## PREPARE SYNTAX FILES FOR STATS PACKAGES
# Initializing the syntax file strings
$spss_string = "FILE HANDLE data1 NAME='data_place_holder_name' LRECL=90000.\n";
$spss_string .= "DATA LIST FREE" . "\n\t";
$spss_string .= "FILE = data1\n\t/";
$sas_string = "DATA " . $app_name . ";\nINPUT ";
$sas_format_string = "data redcap;\n\tset redcap;\n";
$stata_string = "clear\n\n";
$R_string = "#Clear existing data and graphics\nrm(list=ls())\n";
$R_string .= "graphics.off()\n";
$R_string .= "#Load Hmisc library\nlibrary(Hmisc)\n";
$R_label_string = "#Setting Labels\n";
$R_units_string = "\n#Setting Units\n";
$R_factors_string = "\n\n#Setting Factors(will create new variable for factors)";
$R_levels_string = "";
$value_labels_spss = "VALUE LABELS ";
// Get relevant metadata to use for syntax files
$syntaxfile_sql = "SELECT field_name, element_validation_type, element_enum, element_type, element_label, field_units
FROM redcap_metadata where project_id = $project_id and field_name in ($chkd_flds) order by field_order";
// Array that is prepended to $field_names array if fields need to be added, such as redcap_event_name or survey timestamp
$field_names_prepend = array();
$prev_form = "";
$prev_field = "";
// Loop through all fields that were exported
$q = db_query($syntaxfile_sql);
while ($row = db_fetch_assoc($q)) {
// Create object for each field we loop through
$ob = new stdClass();
foreach ($row as $col => $val) {
$col = strtoupper($col);
$ob->$col = $val;
}
// Set values for this loop
$this_form = $Proj->metadata[$ob->FIELD_NAME]['form_name'];
// If surveys exist, as timestamp and identifier fields
if ($exportSurveyFields && $prev_form != $this_form && $ob->FIELD_NAME != $table_pk && isset($Proj->forms[$this_form]['survey_id'])) {
// Alter $meta_array
$ob2 = new stdClass();
$ob2->ELEMENT_TYPE = 'text';
$ob2->FIELD_NAME = $this_form . '_timestamp';
$ob2->ELEMENT_LABEL = 'Survey Timestamp';
$ob2->ELEMENT_ENUM = '';
$ob2->FIELD_UNITS = '';
$ob2->ELEMENT_VALIDATION_TYPE = '';
$meta_array[$ob2->FIELD_NAME] = (Object)$ob2;
}
if ($ob->ELEMENT_TYPE != 'checkbox') {
// For non-checkboxes, add to $meta_array
$meta_array[$ob->FIELD_NAME] = (Object)$ob;
} else {
// For checkboxes, loop through each choice to add to $meta_array
$orig_fieldname = $ob->FIELD_NAME;
$orig_fieldlabel = $ob->ELEMENT_LABEL;
$orig_elementenum = $ob->ELEMENT_ENUM;
foreach (parseEnum($orig_elementenum) as $this_value => $this_label) {
unset($ob);
// $ob = $meta_set->FetchObject();
$ob = new stdClass();
// If coded value is not numeric, then format to work correct in variable name (no spaces, caps, etc)
if (!is_numeric($this_value)) {
$this_value = preg_replace("/[^a-z0-9]/", "", strtolower($this_value));
}
// Convert each checkbox choice to a advcheckbox field (because advcheckbox has equivalent processing we need)
// Append triple underscore + coded value
$ob->FIELD_NAME = $orig_fieldname . '___' . $this_value;
$ob->ELEMENT_ENUM = "0, Unchecked \\n 1, Checked";
$ob->ELEMENT_TYPE = "advcheckbox";
$ob->ELEMENT_LABEL = "$orig_fieldlabel (choice=" . str_replace(array("'", "\""), array("", ""), $this_label) . ")";
$meta_array[$ob->FIELD_NAME] = (Object)$ob;
}
}
if ($ob->FIELD_NAME == $table_pk) {
// If project has multiple Events (i.e. Longitudinal), add new column for Event name
if ($longitudinal) {
// Put unique event names and labels into array to convert to enum format
$evtEnumArray = array();
$evtLabels = array();
foreach ($Proj->eventInfo as $event_id => $attr) {
$evtLabels[$event_id] = label_decode($attr['name_ext']);
}
foreach ($evtLabels as $event_id => $event_label) {
$evtEnumArray[] = $Proj->getUniqueEventNames($event_id) . ", " . label_decode($event_label);
}
$evtEnum = implode(" \\n ", $evtEnumArray);
// Alter $meta_array
$ob2 = new stdClass();
$ob2->ELEMENT_TYPE = 'select';
$ob2->FIELD_NAME = 'redcap_event_name';
$ob2->ELEMENT_LABEL = 'Event Name';
$ob2->ELEMENT_ENUM = $evtEnum;
$ob2->FIELD_UNITS = '';
$ob2->ELEMENT_VALIDATION_TYPE = '';
$meta_array[$ob2->FIELD_NAME] = (Object)$ob2;
// Add pseudo-field to array
$field_names_prepend[] = $ob2->FIELD_NAME;
}
// If project has DAGs, add new column for group name
if ($exportDags) {
// Alter $meta_array
$ob2 = new stdClass();
$ob2->ELEMENT_TYPE = 'select';
$ob2->FIELD_NAME = 'redcap_data_access_group';
$ob2->ELEMENT_LABEL = 'Data Access Group';
$ob2->ELEMENT_ENUM = $dagEnum;
$ob2->FIELD_UNITS = '';
$ob2->ELEMENT_VALIDATION_TYPE = '';
$meta_array[$ob2->FIELD_NAME] = (Object)$ob2;
// Add pseudo-field to array
$field_names_prepend[] = $ob2->FIELD_NAME;
}
// Add survey identifier (unless we've set it to remove all identifiers - treat survey identifier same as field identifier)
if ($exportSurveyFields && !$do_remove_identifiers) {
// Alter $meta_array
$ob2 = new stdClass();
$ob2->ELEMENT_TYPE = 'text';
$ob2->FIELD_NAME = 'redcap_survey_identifier';
$ob2->ELEMENT_LABEL = 'Survey Identifier';
$ob2->ELEMENT_ENUM = '';
$ob2->FIELD_UNITS = '';
$ob2->ELEMENT_VALIDATION_TYPE = '';
$meta_array[$ob2->FIELD_NAME] = (Object)$ob2;
// Add pseudo-field to array
$field_names_prepend[] = $ob2->FIELD_NAME;
}
// If surveys exist, as timestamp and identifier fields
if ($exportSurveyFields && $prev_form != $this_form && isset($Proj->forms[$this_form]['survey_id'])) {
// Alter $meta_array
$ob2 = new stdClass();
$ob2->ELEMENT_TYPE = 'text';
$ob2->FIELD_NAME = $this_form . '_timestamp';
$ob2->ELEMENT_LABEL = 'Survey Timestamp';
$ob2->ELEMENT_ENUM = '';
$ob2->FIELD_UNITS = '';
$ob2->ELEMENT_VALIDATION_TYPE = '';
$meta_array[$ob2->FIELD_NAME] = (Object)$ob2;
}
}
// Set values for next loop
$prev_form = $this_form;
$prev_field = $ob->FIELD_NAME;
}
// Now reset field_names array
$field_names = array_keys($meta_array);
// $spss_data_type_array = "";
$spss_format_dates = "";
$spss_variable_label = "VARIABLE LABEL ";
$spss_variable_level = array();
$sas_label_section = "\ndata redcap;\n\tset redcap;\n";
$sas_value_label = "proc format;\n";
$sas_input = "input\n";
$sas_informat = "";
$sas_format = "";
$stata_insheet = "insheet ";
$stata_var_label = "";
$stata_inf_label = "";
$stata_value_label = "";
$stata_date_format = "";
$first_label = true;
$large_name_counter = 0;
$large_name = false;
// Use arrays for string replacement
$orig = array("'", "\"", "\r\n", "\r", "\n", "<", "<=");
$repl = array("", "", " ", " ", " ", "<", "< =");
//print_array($meta_array);print_array($field_names);exit;
// Loop through all metadata fields
for ($x = 0; $x <= count($field_names) + 1; $x++) {
if (($x % 5) == 0 && $x != 0) {
$spss_string .= "\n\t";
}
$large_name = false;
// Set field object for this loop
$ob = $meta_array[$field_names[$x]];
// Remove any . or - in the field name (as a result of checkbox raw values containing . or -)
// $ob->FIELD_NAME = str_replace(array("-", "."), array("_", "_"), (string)$ob->FIELD_NAME);
// Convert "sql" field types to "select" field types so that their Select Choices come out correctly in the syntax files.
/**
* override for autocomplete plugin code starts here
* add autocomplete type to this check
*/
if ($ob->ELEMENT_TYPE == "sql" || $ob->ELEMENT_TYPE == "autocomplete") /**
* end override for autocomplete plugin code
*/ {
// Change to select
$ob->ELEMENT_TYPE = "select";
// Now populate it's choices by running the query
$ob->ELEMENT_ENUM = getSqlFieldEnum($ob->ELEMENT_ENUM);
} elseif ($ob->ELEMENT_TYPE == "yesno") {
$ob->ELEMENT_ENUM = YN_ENUM;
} elseif ($ob->ELEMENT_TYPE == "truefalse") {
$ob->ELEMENT_ENUM = TF_ENUM;
}
//Remove any offending characters from label
$ob->ELEMENT_LABEL = str_replace($orig, $repl, label_decode(html_entity_decode($ob->ELEMENT_LABEL, ENT_QUOTES)));
if ($field_names[$x] != "") {
if (strlen($field_names[$x]) >= 31) {
$short_name = substr($field_names[$x], 0, 20) . "_v_" . $large_name_counter;
$sas_label_section .= "\tlabel " . $short_name . "='" . $ob->ELEMENT_LABEL . "';\n";
$stata_var_label .= "label variable " . $short_name . ' "' . $ob->ELEMENT_LABEL . '"' . "\n";
$stata_insheet .= $short_name . " ";
$large_name_counter++;
$large_name = true;
}
if (!$large_name) {
$sas_label_section .= "\tlabel " . $field_names[$x] . "='" . $ob->ELEMENT_LABEL . "';\n";
$stata_var_label .= "label variable " . $field_names[$x] . ' "' . $ob->ELEMENT_LABEL . '"' . "\n";
$stata_insheet .= $field_names[$x] . " ";
}
$spss_variable_label .= $field_names[$x] . " '" . $ob->ELEMENT_LABEL . "'\n\t/";
$R_label_string .= "\nlabel(data$" . $field_names[$x] . ")=" . '"' . $ob->ELEMENT_LABEL . '"';
if (($ob->FIELD_UNITS != Null) || ($ob->FIELD_UNITS != "")) {
$R_units_string .= "\nunits(data$" . $field_names[$x] . ")=" . '"' . $ob->FIELD_UNITS . '"';
}
}
# Checking for single element enum (i.e. if it is coded with a number or letter)
$single_element_enum = true;
if (substr_count(((string)$ob->ELEMENT_ENUM), ",") > 0) {
$single_element_enum = false;
}
# Select value labels are created
if (($ob->ELEMENT_TYPE == "yesno" || $ob->ELEMENT_TYPE == "truefalse" || $ob->ELEMENT_TYPE == "select" || $ob->ELEMENT_TYPE == "advcheckbox" || $ob->ELEMENT_TYPE == "radio") && !preg_match("/\+\+SQL\+\+/", (string)$ob->ELEMENT_ENUM)) {
//Remove any apostrophes from the Choice Labels
$ob->ELEMENT_ENUM = str_replace($orig, $repl, label_decode($ob->ELEMENT_ENUM));
//Place $ in front of SAS value if using non-numeric coded values for dropdowns/radios
$sas_val_enum_num = ""; //default
$numericChoices = true;
foreach (array_keys(parseEnum($ob->ELEMENT_ENUM)) as $key) {
if (!is_numeric($key)) {
// If at least one key is not numeric, then stop looping because we have all we need.
$sas_val_enum_num = "$";
$numericChoices = false;
break;
}
}
if ($first_label) {
if (!$single_element_enum) {
$value_labels_spss .= "\n" . (string)$ob->FIELD_NAME . " ";
}
$R_factors_string .= "\ndata$" . (string)$ob->FIELD_NAME . ".factor = factor(data$" . (string)$ob->FIELD_NAME . ",levels=c(";
$R_levels_string .= "\nlevels(data$" . (string)$ob->FIELD_NAME . ".factor)=c(";
$first_label = false;
if (!$large_name && !$single_element_enum) {
$sas_value_label .= "\tvalue $sas_val_enum_num" . (string)$ob->FIELD_NAME . "_ ";
$sas_format_string .= "\n\tformat " . (string)$ob->FIELD_NAME . " " . (string)$ob->FIELD_NAME . "_.;\n";
if ($numericChoices) {
$stata_inf_label .= "\nlabel values " . (string)$ob->FIELD_NAME . " " . (string)$ob->FIELD_NAME . "_\n";
$stata_value_label = "label define " . (string)$ob->FIELD_NAME . "_ ";
}
} else if ($large_name && !$single_element_enum) {
$sas_value_label .= "\tvalue $sas_val_enum_num" . $short_name . "_ ";
$sas_format_string .= "\n\tformat " . $short_name . " " . $short_name . "_.;\n";
if ($numericChoices) {
$stata_value_label .= "label define " . $short_name . "_ ";
$stata_inf_label .= "\nlabel values " . $short_name . " " . $short_name . "_\n";
}
}
} else if (!$first_label) {
if (!$single_element_enum) {
$value_labels_spss .= "\n/" . (string)$ob->FIELD_NAME . " ";
if (!$large_name) {
$sas_value_label .= "\n\tvalue $sas_val_enum_num" . (string)$ob->FIELD_NAME . "_ ";
$sas_format_string .= "\tformat " . (string)$ob->FIELD_NAME . " " . (string)$ob->FIELD_NAME . "_.;\n";
if ($numericChoices) {
$stata_value_label .= "\nlabel define " . (string)$ob->FIELD_NAME . "_ ";
$stata_inf_label .= "label values " . (string)$ob->FIELD_NAME . " " . (string)$ob->FIELD_NAME . "_\n";
}
}
}
$R_factors_string .= "data$" . (string)$ob->FIELD_NAME . ".factor = factor(data$" . (string)$ob->FIELD_NAME . ",levels=c(";
$R_levels_string .= "levels(data$" . (string)$ob->FIELD_NAME . ".factor)=c(";
if ($large_name && !$single_element_enum) {
$sas_value_label .= "\n\tvalue $sas_val_enum_num" . $short_name . "_ ";
$sas_format_string .= "\tformat " . $short_name . " " . $short_name . "_.;\n";
if ($numericChoices) {
$stata_value_label .= "\nlabel define " . $short_name . "_ "; //LS inserted this line 24-Feb-2012
$stata_inf_label .= "label values " . $short_name . " " . $short_name . "_\n";
}
}
}
$first_new_line_explode_array = explode("\\n", (string)$ob->ELEMENT_ENUM);
// Loop through multiple choice options
$select_is_text = false;
$select_determining_array = array();
for ($counter = 0; $counter < count($first_new_line_explode_array); $counter++) {
if (!$single_element_enum) {
// SAS: Add line break after 2 multiple choice options
if (($counter % 2) == 0 && $counter != 0) {
$sas_value_label .= "\n\t\t";
$value_labels_spss .= "\n\t";
}
$second_comma_explode = explode(",", $first_new_line_explode_array[$counter], 2);
$value_labels_spss .= "'" . trim($second_comma_explode[0]) . "' ";
$value_labels_spss .= "'" . trim($second_comma_explode[1]) . "' ";
if (!is_numeric(trim($second_comma_explode[0])) && is_numeric(substr(trim($second_comma_explode[0]), 0, 1))) {
// if enum raw value is not a number BUT begins with a number, add quotes around it for SAS only (parsing issue)
$sas_value_label .= "'" . trim($second_comma_explode[0]) . "'=";
} else {
$sas_value_label .= trim($second_comma_explode[0]) . "=";
}
$sas_value_label .= "'" . trim($second_comma_explode[1]) . "' ";
if ($numericChoices) {
$stata_value_label .= trim($second_comma_explode[0]) . " ";
$stata_value_label .= "\"" . trim($second_comma_explode[1]) . "\" ";
}
$select_determining_array[] = $second_comma_explode[0];
$R_factors_string .= '"' . trim($second_comma_explode[0]) . '",';
$R_levels_string .= '"' . trim($second_comma_explode[1]) . '",';
} else {
$select_determining_array[] = $second_comma_explode[0];
$R_factors_string .= '"' . trim($first_new_line_explode_array[$counter]) . '",';
$R_levels_string .= '"' . trim($first_new_line_explode_array[$counter]) . '",';
}
}
$R_factors_string = rtrim($R_factors_string, ",");
$R_factors_string .= "))\n"; //pharris 09/28/05
$R_levels_string = rtrim($R_levels_string, ",");
$R_levels_string .= ")\n";
if (!$single_element_enum) {
$sas_value_label = rtrim($sas_value_label, " ");
$sas_value_label .= ";";
}
if (!$single_element_enum) {
foreach ($select_determining_array as $value) {
if (preg_match("/([A-Za-z])/", $value)) {
$select_is_text = true;
}
}
} else {
foreach ($first_new_line_explode_array as $value) {
if (preg_match("/([A-Za-z])/", $value)) {
$select_is_text = true;
}
}
}
} else if (preg_match("/\+\+SQL\+\+/", (string)$ob->ELEMENT_ENUM)) {
$select_is_text = true;
}
################################################################################
################################################################################
# If the ELEMENT_VALIDATION_TYPE is a float the data is define as a Number
if ($ob->ELEMENT_VALIDATION_TYPE == "float" || $ob->ELEMENT_TYPE == "calc") {
$spss_string .= $ob->FIELD_NAME . " (F8.2) ";
if (!$large_name) {
$sas_informat .= "\tinformat " . $ob->FIELD_NAME . " best32. ;\n";
$sas_format .= "\tformat " . $ob->FIELD_NAME . " best12. ;\n";
$sas_input .= "\t\t" . $ob->FIELD_NAME . "\n";
} elseif ($large_name) {
$sas_informat .= "\tinformat " . $short_name . " best32. ;\n";
$sas_format .= "\tformat " . $short_name . " best12. ;\n";
$sas_input .= "\t\t" . $short_name . "\n";
}
// $spss_data_type_array[$x] = "NUMBER";
$spss_variable_level[] = $ob->FIELD_NAME . " (SCALE)";
} elseif ($ob->ELEMENT_TYPE == "slider" || $ob->ELEMENT_VALIDATION_TYPE == "int") {
$spss_string .= $ob->FIELD_NAME . " (F8) ";
if (!$large_name) {
$sas_informat .= "\tinformat " . $ob->FIELD_NAME . " best32. ;\n";
$sas_format .= "\tformat " . $ob->FIELD_NAME . " best12. ;\n";
$sas_input .= "\t\t" . $ob->FIELD_NAME . "\n";
} elseif ($large_name) {
$sas_informat .= "\tinformat " . $short_name . " best32. ;\n";
$sas_format .= "\tformat " . $short_name . " best12. ;\n";
$sas_input .= "\t\t" . $short_name . "\n";
}
// $spss_data_type_array[$x] = "NUMBER";
$spss_variable_level[] = $ob->FIELD_NAME . " (SCALE)";
# If the ELEMENT_VALIDATION_TYPE is a DATE a treat the data as a date
} elseif ($ob->ELEMENT_VALIDATION_TYPE == "date" || $ob->ELEMENT_VALIDATION_TYPE == "date_ymd" || $ob->ELEMENT_VALIDATION_TYPE == "date_mdy" || $ob->ELEMENT_VALIDATION_TYPE == "date_dmy") {
$spss_string .= $ob->FIELD_NAME . " (SDATE10) ";
$spss_format_dates .= "FORMATS " . $ob->FIELD_NAME . "(ADATE10).\n";
if (!$large_name) {
$sas_informat .= "\tinformat " . $ob->FIELD_NAME . " yymmdd10. ;\n";
$sas_format .= "\tformat " . $ob->FIELD_NAME . " yymmdd10. ;\n";
$sas_input .= "\t\t" . $ob->FIELD_NAME . "\n";
$stata_date_format .= "\ntostring " . $ob->FIELD_NAME . ", replace";
$stata_date_format .= "\ngen _date_ = date(" . $ob->FIELD_NAME . ",\"YMD\")\n";
$stata_date_format .= "drop " . $ob->FIELD_NAME . "\n";
$stata_date_format .= "rename _date_ " . $ob->FIELD_NAME . "\n";
$stata_date_format .= "format " . $ob->FIELD_NAME . " %dM_d,_CY\n";
} elseif ($large_name) {
$sas_informat .= "\tinformat " . $short_name . " yymmdd10. ;\n";
$sas_format .= "\tformat " . $short_name . " yymmdd10. ;\n";
$sas_input .= "\t\t" . $short_name . "\n";
$stata_date_format .= "\ntostring " . $short_name . ", replace";
$stata_date_format .= "\ngen _date_ = date(" . $short_name . ",\"YMD\")\n";
$stata_date_format .= "drop " . $short_name . "\n";
$stata_date_format .= "rename _date_ " . $short_name . "\n";
$stata_date_format .= "format " . $short_name . " %dM_d,_CY\n";
}
# If the ELEMENT_VALIDATION_TYPE is TIME (military)
} elseif ($ob->ELEMENT_VALIDATION_TYPE == "time") {
$spss_string .= $ob->FIELD_NAME . " (A500) ";
if (!$large_name) {
$sas_informat .= "\tinformat " . $ob->FIELD_NAME . " time5. ;\n";
$sas_format .= "\tformat " . $ob->FIELD_NAME . " time5. ;\n";
$sas_input .= "\t\t" . $ob->FIELD_NAME . "\n";
} elseif ($large_name) {
$sas_informat .= "\tinformat " . $short_name . " time5. ;\n";
$sas_format .= "\tformat " . $short_name . " time5. ;\n";
$sas_input .= "\t\t" . $short_name . "\n";
}
# If the ELEMENT_VALIDATION_TYPE is DATETIME or DATETIME_SECONDS
// } elseif (substr($ob->ELEMENT_VALIDATION_TYPE, 0, 8) == "datetime") {
# If the object type is select then the variable $select_is_text is checked to
# see if it is a TEXT or a NUMBER and treated accordanly.
} elseif ($ob->ELEMENT_TYPE == "yesno" || $ob->ELEMENT_TYPE == "truefalse" || $ob->ELEMENT_TYPE == "select" || $ob->ELEMENT_TYPE == "advcheckbox" || $ob->ELEMENT_TYPE == "radio") {
if ($select_is_text) {
$temp_trim = rtrim("varchar(500)", ")");
# Divides the string to get the number of caracters
$temp_explode_number = explode("(", $temp_trim);
$spss_string .= $ob->FIELD_NAME . " (A" . $temp_explode_number[1] . ") ";
if (!$large_name) {
$sas_informat .= "\tinformat " . $ob->FIELD_NAME . " \$" . $temp_explode_number[1] . ". ;\n";
$sas_format .= "\tformat " . $ob->FIELD_NAME . " \$" . $temp_explode_number[1] . ". ;\n";
$sas_input .= "\t\t" . $ob->FIELD_NAME . " \$\n";
} elseif ($large_name) {
$sas_informat .= "\tinformat " . $short_name . " \$" . $temp_explode_number[1] . ". ;\n";
$sas_format .= "\tformat " . $short_name . " \$" . $temp_explode_number[1] . ". ;\n";
$sas_input .= "\t\t" . $short_name . " \$\n";
}
// $spss_data_type_array[$x] = "TEXT";
} else {
$spss_string .= $ob->FIELD_NAME . " (F3) ";
if (!$large_name) {
$sas_informat .= "\tinformat " . $ob->FIELD_NAME . " best32. ;\n";
$sas_format .= "\tformat " . $ob->FIELD_NAME . " best12. ;\n";
$sas_input .= "\t\t" . $ob->FIELD_NAME . "\n";
} elseif ($large_name) {
$sas_informat .= "\tinformat " . $short_name . " best32. ;\n";
$sas_format .= "\tformat " . $short_name . " best12. ;\n";
$sas_input .= "\t\t" . $short_name . "\n";
}
// $spss_data_type_array[$x] = "NUMBER";
}
# If the object type is text a treat the data like a text and look for the length
# that is specified in the database
} elseif ($ob->ELEMENT_TYPE == "text" || $ob->ELEMENT_TYPE == "calc" || $ob->ELEMENT_TYPE == "file") {
$spss_string .= $ob->FIELD_NAME . " (A500) ";
if (!$large_name) {
$sas_informat .= "\tinformat " . $ob->FIELD_NAME . " \$500. ;\n";
$sas_format .= "\tformat " . $ob->FIELD_NAME . " \$500. ;\n";
$sas_input .= "\t\t" . $ob->FIELD_NAME . " \$\n";
} elseif ($large_name) {
$sas_informat .= "\tinformat " . $short_name . " \$500. ;\n";
$sas_format .= "\tformat " . $short_name . " \$500. ;\n";
$sas_input .= "\t\t" . $short_name . " \$\n";
}
# If the object type is textarea a treat the data like a text and specify a large
# string size.
} elseif ($ob->ELEMENT_TYPE == "textarea") {
$spss_string .= $ob->FIELD_NAME . " (A30000) ";
if (!$large_name) {
$sas_informat .= "\tinformat " . $ob->FIELD_NAME . " \$5000. ;\n";
$sas_format .= "\tformat " . $ob->FIELD_NAME . " \$5000. ;\n";
$sas_input .= "\t\t" . $ob->FIELD_NAME . " \$\n";
} elseif ($large_name) {
$sas_informat .= "\tinformat " . $short_name . " \$5000. ;\n";
$sas_format .= "\tformat " . $short_name . " \$5000. ;\n";
$sas_input .= "\t\t" . $short_name . " \$\n";
}
// $spss_data_type_array[$x] = "TEXT";
}
}
// File names
$today = date("Y-m-d_Hi");
$projTitleShort = substr(str_replace(" ", "", ucwords(preg_replace("/[^a-zA-Z0-9 ]/", "", html_entity_decode($app_title, ENT_QUOTES)))), 0, 20);
$data_file_name = $projTitleShort . "_DATA_NOHDRS_" . $today . ".csv";
$data_file_name_WH = $projTitleShort . "_DATA_" . $today . ".csv";
$data_file_name_labels = $projTitleShort . "_DATA_LABELS_" . $today . ".csv";
$export_sps_file_name = $projTitleShort . "_SPSS_" . $today . ".sps";
$export_sas_file_name = $projTitleShort . "_SAS_" . $today . ".sas";
$export_R_file_name = $projTitleShort . "_R_" . $today . ".r";
$export_stata_file_name = $projTitleShort . "_STATA_" . $today . ".do";
//Finish up syntax files
$spss_string = rtrim($spss_string);
$spss_string .= ".\n";
$spss_string .= "\nVARIABLE LEVEL " . implode("\n\t/", $spss_variable_level) . ".\n";
$spss_string .= "\n" . substr_replace($spss_variable_label, ".", -3) . "\n\n";
$spss_string .= rtrim($value_labels_spss);
$spss_string .= ".\n\n$spss_format_dates\nSET LOCALE=en_us.\nEXECUTE.\n";
$spss_string = str_replace("data_place_holder_name", $data_file_name, $spss_string);
$sas_read_string .= "%macro removeOldFile(bye); %if %sysfunc(exist(&bye.)) %then %do; proc delete data=&bye.; run; "
. "%end; %mend removeOldFile; %removeOldFile(work.redcap); data REDCAP; "; // Suggested change by Ray Balise
//$sas_read_string .= "proc delete data=REDCAP;\nrun;\n\ndata REDCAP;"; // Added to prevent deleting all temp files
//$sas_read_string .= "proc delete data=_ALL_;\nrun;\n\ndata REDCAP;";
$sas_read_string .= "%let _EFIERR_ = 0; ";
$sas_read_string .= "infile '" . $data_file_name . "'";
$sas_read_string .= " delimiter = ',' MISSOVER DSD lrecl=32767 firstobs=1 ; ";
$sas_read_string .= "\n" . $sas_informat;
$sas_read_string .= "\n" . $sas_format;
$sas_read_string .= "\n" . $sas_input;
$sas_read_string .= ";\n";
$sas_read_string .= "if _ERROR_ then call symput('_EFIERR_',\"1\");\n";
$sas_read_string .= "run;\n\nproc contents;run;\n\n";
$sas_read_string .= $sas_label_section . "\trun;\n";
$sas_value_label .= "\n\trun;\n";
$sas_format_string .= "\trun;\n";
$sas_read_string .= "\n" . $sas_value_label;
$sas_read_string .= "\n" . $sas_format_string;
$sas_read_string .= "\nproc contents data=redcap;";
$sas_read_string .= "\nproc print data=redcap;";
$sas_read_string .= "\nrun;\nquit;";
$stata_order = "order " . substr($stata_insheet, 8);
$stata_insheet .= "using " . "\"" . $data_file_name . "\", nonames";
$stata_string .= $stata_insheet . "\n\n";
$stata_string .= "label data " . "\"" . $data_file_name . "\"" . "\n\n";
$stata_string .= $stata_value_label . "\n";
$stata_string .= $stata_inf_label . "\n\n";
$stata_string .= $stata_date_format . "\n";
$stata_string .= $stata_var_label . "\n";
$stata_string .= $stata_order . "\n";
$stata_string .= "set more off\ndescribe\n";
$R_string .= "#Read Data\ndata=read.csv('" . $data_file_name_WH . "')\n";
$R_string .= $R_label_string;
$R_string .= $R_units_string;
$R_string .= $R_factors_string;
$R_string .= $R_levels_string;
$today = date("Y-m-d-H-i-s");
$docs_comment = $docs_comment_WH = "Data export file created by $userid on $today";
$spss_docs_comment = "Spss syntax file created by $userid on $today";
$sas_docs_comment = "Sas syntax file created by $userid on $today";
$stata_docs_comment = "Stata syntax file created by $userid on $today";
$R_docs_comment = "R syntax file created by $userid on $today";
$data = prep($data);
#########################################
// Replace any MS Word chacters in the data
$data_csv = replaceMSchars($data_csv);
$data_csv_labels = replaceMSchars($data_csv_labels);
//Add comment in last field if these are date shifted
$doc_rights = $do_date_shift ? "'DATE_SHIFT'" : "NULL";
// Set flag for checking if error occurs during saving of files to docs table
$is_export_error = false;
### Creates the STATA syntax file
$stata_string = strip_tags($stata_string); // Do NOT use addBOMtoUTF8() on Stata because BOM causes issues in syntax file
$docs_size = strlen($stata_string);
$export_sql = "INSERT INTO redcap_docs (project_id,docs_name,docs_file,docs_date,docs_size,docs_comment,docs_type,docs_rights,export_file) "
. "VALUES ($project_id, '" . $export_stata_file_name . "', NULL, '" . TODAY . "','$docs_size','" . $stata_docs_comment . "','application/octet-stream',$doc_rights,1)";
if (!db_query($export_sql)) {
$is_export_error = true;
} else {
// Get insert id
$stata_doc_id = db_insert_id();
// Store the file in the file system
if (!DataExport::storeExportFile($export_stata_file_name, $stata_string, $stata_doc_id, $docs_size)) {
$is_export_error = true;
}
}
### Creates the R syntax file
$R_string = addBOMtoUTF8(strip_tags($R_string));
$docs_size = strlen($R_string);
$export_sql = "INSERT INTO redcap_docs (project_id,docs_name,docs_file,docs_date,docs_size,docs_comment,docs_type,docs_rights,export_file) "
. "VALUES ($project_id, '" . $export_R_file_name . "', NULL, '" . TODAY . "','$docs_size','" . $R_docs_comment . "','application/octet-stream',$doc_rights,1)";
if (!db_query($export_sql)) {
$is_export_error = true;
} else {
// Get insert id
$r_doc_id = db_insert_id();
// Store the file in the file system
if (!DataExport::storeExportFile($export_R_file_name, $R_string, $r_doc_id, $docs_size)) {
$is_export_error = true;
}
}
### Creates the SAS syntax file
$sas_read_string = addBOMtoUTF8(strip_tags($sas_read_string));
$docs_size = strlen($sas_read_string);
$export_sql = "INSERT INTO redcap_docs (project_id,docs_name,docs_file,docs_date,docs_size,docs_comment,docs_type,docs_rights,export_file) "
. "VALUES ($project_id, '" . $export_sas_file_name . "', NULL, '" . TODAY . "','$docs_size','" . $sas_docs_comment . "','application/octet-stream',$doc_rights,1)";
if (!db_query($export_sql)) {
$is_export_error = true;
} else {
// Get insert id
$sas_doc_id = db_insert_id();
// Store the file in the file system
if (!DataExport::storeExportFile($export_sas_file_name, $sas_read_string, $sas_doc_id, $docs_size)) {
$is_export_error = true;
}
}
### Creates the data comma separeted value file WITHOUT headers
$data_csv_temp = addBOMtoUTF8($data_csv);
$docs_size = strlen($data_csv_temp);
$export_sql = "INSERT INTO redcap_docs (project_id,docs_name,docs_file,docs_date,docs_size,docs_comment,docs_type,docs_rights,export_file) "
. "VALUES ($project_id, '" . $data_file_name . "', NULL, '" . TODAY . "','$docs_size','" . $docs_comment . "','application/csv',$doc_rights,1)";
if (!db_query($export_sql)) {
$is_export_error = true;
} else {
// Get insert id
$data_wo_hdr_doc_id = db_insert_id();
// Store the file in the file system
if (!DataExport::storeExportFile($data_file_name, $data_csv_temp, $data_wo_hdr_doc_id, $docs_size)) {
$is_export_error = true;
}
}
unset($data_csv_temp);
### Creates the data comma separeted value file WITH header
$data_csv = addBOMtoUTF8($headers . $data_csv);
$docs_size = strlen($data_csv);
$export_sql = "INSERT INTO redcap_docs (project_id,docs_name,docs_file,docs_date,docs_size,docs_comment,docs_type,docs_rights,export_file) "
. "VALUES ($project_id, '" . $data_file_name_WH . "', NULL, '" . TODAY . "','$docs_size','" . $docs_comment_WH . "','application/csv',$doc_rights,1)";
if (!db_query($export_sql)) {
$is_export_error = true;
} else {
// Get insert id
$data_doc_id = db_insert_id();
// Store the file in the file system
if (!DataExport::storeExportFile($data_file_name_WH, $data_csv, $data_doc_id, $docs_size)) {
$is_export_error = true;
}
}
unset($data_csv);
### Creates the SPSS syntax file
$spss_string = addBOMtoUTF8(strip_tags($spss_string));
$docs_size = strlen($spss_string);
$export_sql = "INSERT INTO redcap_docs (project_id,docs_name,docs_file,docs_date,docs_size,docs_comment,docs_type,docs_rights,export_file) "
. "VALUES ($project_id, '" . $export_sps_file_name . "', NULL, '" . TODAY . "','$docs_size','" . $spss_docs_comment . "','application/octet-stream',$doc_rights,1)";
if (!db_query($export_sql)) {
$is_export_error = true;
} else {
// Get insert id
$spss_doc_id = db_insert_id();
// Store the file in the file system
if (!DataExport::storeExportFile($export_sps_file_name, $spss_string, $spss_doc_id, $docs_size)) {
$is_export_error = true;
}
}
### Creates the data comma separeted value file WITH LABELS
$data_csv_labels = addBOMtoUTF8($headers_labels . $data_csv_labels);
$docs_size = strlen($data_csv_labels);
$export_sql = "INSERT INTO redcap_docs (project_id,docs_name,docs_file,docs_date,docs_size,docs_comment,docs_type,docs_rights,export_file) "
. "VALUES ($project_id, '" . $data_file_name_labels . "', NULL, '" . TODAY . "','$docs_size','" . $docs_comment . "','application/csv',$doc_rights,1)";
if (!db_query($export_sql)) {
$is_export_error = true;
} else {
// Get insert id
$data_labels_doc_id = db_insert_id();
// Store the file in the file system
if (!DataExport::storeExportFile($data_file_name_labels, $data_csv_labels, $data_labels_doc_id, $docs_size)) {
$is_export_error = true;
}
}
#########################################
//Catch the error if the CSV data file is too large for MySQL to handle
if ($is_export_error) {
include APP_PATH_DOCROOT . 'ProjectGeneral/header.php';
renderPageTitle("<img src='" . APP_PATH_IMAGES . "application_go.png'> {$lang['app_03']}");
print "<div class='red' style='margin:20px 0;'><img src='" . APP_PATH_IMAGES . "exclamation.png'>
<b>{$lang['global_01']}:</b><br/>{$lang['data_export_tool_62']}";
if ($super_user) {
if ($edoc_storage_option == '1') {
print $lang['data_export_tool_136'];
} elseif ($edoc_storage_option == '0') {
print $lang['data_export_tool_135'] . " (<b>" . EDOC_PATH . "</b>)" . $lang['period'];
} else {
print $lang['data_export_tool_135'] . " " . $lang['period'];
}
print " " . $lang['data_export_tool_137'];
} else {
print "{$lang['data_export_tool_64']} <a href='mailto:$project_contact_email' style='font-family:Verdana;'>$project_contact_name</a>
{$lang['data_export_tool_65']}";
}
print "</div>";
renderPrevPageLink(PAGE);
include APP_PATH_DOCROOT . 'ProjectGeneral/footer.php';
exit;
}
//Catch the error if there were data conversion problems
if ($is_data_conversion_error) {
include APP_PATH_DOCROOT . 'ProjectGeneral/header.php';
renderPageTitle("<img src='" . APP_PATH_IMAGES . "application_go.png'> {$lang['app_03']}");
print "<div class='red' style='margin:20px 0;'><img src='" . APP_PATH_IMAGES . "exclamation.png'>
<b>{$lang['global_01']}:</b><br/>{$lang['data_export_tool_62']}";
if ($super_user) {
print $lang['data_export_tool_63'];
} else {
print "{$lang['data_export_tool_64']} <a href='mailto:$project_contact_email' style='font-family:Verdana;'>$project_contact_name</a>
{$lang['data_export_tool_65']}";
}
print $is_data_conversion_error_msg;
print "</div>";
renderPrevPageLink(PAGE);
include APP_PATH_DOCROOT . 'ProjectGeneral/footer.php';
exit;
}
// Header
include APP_PATH_DOCROOT . 'ProjectGeneral/header.php';
renderPageTitle("<img src='" . APP_PATH_IMAGES . "application_go.png'> {$lang['app_03']}");
print "<div style='text-align:center;padding-top:10px;max-width:700px;'>
<span class='darkgreen' style='padding:8px 80px;'>
<img src='" . APP_PATH_IMAGES . "tick.png' class='imgfix'> {$lang['data_export_tool_05']}
</span>
</div>
<p><br>{$lang['data_export_tool_06']}<br><br>";
// Button back to previous page
$prevPage = (isset($_SERVER['HTTP_REFERER']) && !empty($_SERVER['HTTP_REFERER'])) ? $_SERVER['HTTP_REFERER'] : PAGE_FULL . "?pid=$project_id";
print "<button class='jqbutton' onclick=\"window.location.href='$prevPage';\">
<img src='" . APP_PATH_IMAGES . "arrow_left.png' class='imgfix'>
{$lang['config_functions_40']}
</button>";
//Set the CSV icon to date-shifted look if the data in these files were date shifted
if ($do_date_shift) {
$csv_img = "download_csvdata_ds.gif";
$csvexcel_img = "download_csvexcel_raw_ds.gif";
$csvexcellabels_img = "download_csvexcel_labels_ds.gif";
} else {
$csv_img = "download_csvdata.gif";
$csvexcel_img = "download_csvexcel_raw.gif";
$csvexcellabels_img = "download_csvexcel_labels.gif";
}
// If Send-It is not enabled for Data Export and File Repository, then hide the link to utilize Send-It
$sendItLinkDisplay = ($sendit_enabled == '1' || $sendit_enabled == '3') ? "" : "display:none;";
//Table header
print "<div style='max-width:700px;'>";
print "<table style='border: 1px solid #DODODO; border-collapse: collapse; width: 100%'>
<tr class='grp2'>
<td colspan='2' style='font-family:Verdana;font-size:12px;text-align:right;'>
</td>
<td style='font-family:Verdana;font-size:12px;text-align:center;'>
{$lang['docs_58']}<br>{$lang['data_export_tool_51']}
</td>
</tr>";
//Excel
print '<tr class="odd">
<td valign="top" style="text-align:center;width:60px;padding-top:10px;border:0px;border-left:1px solid #D0D0D0;">
<img src="' . APP_PATH_IMAGES . 'excelicon.gif" title="' . $lang['data_export_tool_15'] . '" alt="' . $lang['data_export_tool_15'] . '" />
</td>
<td style="font-family:Verdana;font-size:11px;padding:10px;" valign="top">
<b>' . $lang['data_export_tool_15'] . '</b><br>
' . $lang['data_export_tool_118'] . '<br><br>
<i>' . $lang['global_02'] . ': ' . $lang['data_export_tool_17'] . '</i>
</td>
<td valign="top" style="text-align:right;width:100px;padding-top:10px;">
<a href="' . APP_PATH_WEBROOT . 'FileRepository/file_download.php?pid=' . $project_id . '&id=' . $data_labels_doc_id . '">
<img src="' . APP_PATH_IMAGES . $csvexcellabels_img . '" title="' . $lang['data_export_tool_60'] . '" alt="' . $lang['data_export_tool_60'] . '"></a>
<a href="' . APP_PATH_WEBROOT . 'FileRepository/file_download.php?pid=' . $project_id . '&id=' . $data_doc_id . '">
<img src="' . APP_PATH_IMAGES . $csvexcel_img . '" title="' . $lang['data_export_tool_60'] . '" alt="' . $lang['data_export_tool_60'] . '"></a>
<div style="text-align:left;padding:5px 0 1px;' . $sendItLinkDisplay . '">
<div style="line-height:5px;">
<img src="' . APP_PATH_IMAGES . 'mail_small.png" style="position: relative; top: 5px;"><a
href="javascript:;" style="color:#666;font-size:10px;text-decoration:underline;"
onclick=\'$("#sendit_' . $data_doc_id . '").toggle("blind",{},"fast");\'>' . $lang['data_export_tool_66'] . '</a>
</div>
<div id="sendit_' . $data_doc_id . '" style="display:none;padding:4px 0 4px 6px;">
<div>
• <a href="javascript:;" onclick="popupSendIt(' . $data_labels_doc_id . ',2);" style="font-size:10px;">' . $lang['data_export_tool_120'] . '</a>
</div>
<div>
• <a href="javascript:;" onclick="popupSendIt(' . $data_doc_id . ',2);" style="font-size:10px;">' . $lang['data_export_tool_119'] . '</a>
</div>
</div>
</div>
</td>
</tr>';
//SPSS
print '<tr class="even noncsv">
<td valign="top" style="text-align:center;width:60px;padding-top:10px;border:0px;border-left:1px solid #D0D0D0;">
<img src="' . APP_PATH_IMAGES . 'spsslogo_small.png" title="' . $lang['data_export_tool_07'] . '" alt="' . $lang['data_export_tool_07'] . '" />
</td>
<td style="font-family:Verdana;font-size:11px;padding:10px;" valign="top">
<b>' . $lang['data_export_tool_07'] . '</b><br />' . $lang['global_24'] . $lang['colon'] . " " . $lang['data_export_tool_08'] . '<br>
<a href="javascript:;" style="text-decoration:underline;font-size:11px;" onclick=\'$("#spss_detail").toggle("fade");\'>' . $lang['data_export_tool_08b'] . '</a>
<div style="display:none;border-top:1px solid #aaa;margin-top:5px;padding-top:3px;" id="spss_detail">
<b>' . $lang['data_export_tool_01'] . '</b><br>' .
$lang['data_export_tool_08c'] . ' <font color="green">/folder/subfolder/</font> (e.g., /Users/administrator/documents/)<br><br>' .
$lang['data_export_tool_08d'] . '
<br><font color=green>FILE HANDLE data1 NAME=\'DATA.CSV\' LRECL=90000.</font><br><br>' .
$lang['data_export_tool_08e'] . '<br>
<font color=green>FILE HANDLE data1 NAME=\'<font color=red>/folder/subfolder/</font>DATA.CSV\' LRECL=90000.</font><br><br>' .
$lang['data_export_tool_08f'] . '
</div>
</td>
<td valign="top" style="text-align:right;width:100px;padding-top:10px;">
<a href="' . APP_PATH_WEBROOT . 'FileRepository/file_download.php?pid=' . $project_id . '&id=' . $spss_doc_id . '">
<img src="' . APP_PATH_IMAGES . 'download_spss.gif" title="' . $lang['data_export_tool_68'] . '" alt="' . $lang['data_export_tool_68'] . '">
</a>
<a href="' . APP_PATH_WEBROOT . 'FileRepository/file_download.php?pid=' . $project_id . '&id=' . $data_wo_hdr_doc_id . '">
<img src="' . APP_PATH_IMAGES . $csv_img . '" title="' . $lang['data_export_tool_69'] . '" alt="' . $lang['data_export_tool_69'] . '"></a>
<div style="padding-left:11px;text-align:left;">
<a href="' . APP_PATH_WEBROOT . 'DataExport/spss_pathway_mapper.php?pid=' . $project_id . '"
><img src="' . APP_PATH_IMAGES . 'download_pathway_mapper.gif" title="' . $lang['data_export_tool_70'] . '" alt="' . $lang['data_export_tool_70'] . '"></a>
</div>
<div style="text-align:left;padding:5px 0 1px;' . $sendItLinkDisplay . '">
<div style="line-height:5px;">
<img src="' . APP_PATH_IMAGES . 'mail_small.png" style="position: relative; top: 5px;"><a
href="javascript:;" style="color:#666;font-size:10px;text-decoration:underline;" onclick=\'
$("#sendit_' . $spss_doc_id . '").toggle("blind",{},"fast");
\'>' . $lang['data_export_tool_66'] . '</a>
</div>
<div id="sendit_' . $spss_doc_id . '" style="display:none;padding:4px 0 4px 6px;">
<div>
• <a href="javascript:;" onclick="popupSendIt(' . $spss_doc_id . ',2);" style="font-size:10px;">' . $lang['data_export_tool_71'] . '</a>
</div>
<div>
• <a href="javascript:;" onclick="popupSendIt(' . $data_wo_hdr_doc_id . ',2);" style="font-size:10px;">' . $lang['data_export_tool_72'] . '</a>
</div>
</div>
</div>
</td>
</tr>';
//SAS
print '<tr class="odd noncsv">
<td valign="top" style="text-align:center;width:60px;padding-top:10px;border:0px;border-left:1px solid #D0D0D0;">
<img src="' . APP_PATH_IMAGES . 'saslogo_small.png" title="' . $lang['data_export_tool_11'] . '" alt="' . $lang['data_export_tool_11'] . '" />
</td>
<td style="font-family:Verdana;font-size:11px;padding:10px;" valign="top">
<b>' . $lang['data_export_tool_11'] . '</b><br />' . $lang['global_24'] . $lang['colon'] . " " . $lang['data_export_tool_130'] . '<br>
<a href="javascript:;" style="text-decoration:underline;font-size:11px;" onclick=\'$("#sas_detail").toggle("fade");\'>' . $lang['data_export_tool_08b'] . '</a>
<div style="display:none;border-top:1px solid #aaa;margin-top:5px;padding-top:3px;" id="sas_detail">
<b>' . $lang['data_export_tool_131'] . '</b><br>' .
$lang['data_export_tool_132'] . ' <font color="green">/folder/subfolder/</font> (e.g., /Users/administrator/documents/)<br><br>' .
$lang['data_export_tool_133'] . '
<br>... <font color=green>infile \'DATA.CSV\' delimiter = \',\' MISSOVER DSD lrecl=32767 firstobs=1 ;</font><br><br>' .
$lang['data_export_tool_08e'] . '<br>
... <font color=green>infile \'<font color=red>/folder/subfolder/</font>DATA.CSV\' delimiter = \',\' MISSOVER DSD lrecl=32767 firstobs=1 ;</font><br><br>' .
$lang['data_export_tool_134'] . '
</div>
</td>
<td valign="top" style="text-align:right;width:100px;padding-top:10px;">
<a href="' . APP_PATH_WEBROOT . 'FileRepository/file_download.php?pid=' . $project_id . '&id=' . $sas_doc_id . '">
<img src="' . APP_PATH_IMAGES . 'download_sas.gif" title="' . $lang['data_export_tool_74'] . '" alt="' . $lang['data_export_tool_74'] . '">
</a>
<a href="' . APP_PATH_WEBROOT . 'FileRepository/file_download.php?pid=' . $project_id . '&id=' . $data_wo_hdr_doc_id . '">
<img src="' . APP_PATH_IMAGES . $csv_img . '" title="' . $lang['data_export_tool_69'] . '" alt="' . $lang['data_export_tool_69'] . '"></a>
<div style="padding-left:11px;text-align:left;">
<a href="' . APP_PATH_WEBROOT . 'DataExport/sas_pathway_mapper.php?pid=' . $project_id . '"
><img src="' . APP_PATH_IMAGES . 'download_pathway_mapper.gif"></a>
</div>
<div style="text-align:left;padding:5px 0 1px;' . $sendItLinkDisplay . '">
<div style="line-height:5px;">
<img src="' . APP_PATH_IMAGES . 'mail_small.png" style="position: relative; top: 5px;"><a
href="javascript:;" style="color:#666;font-size:10px;text-decoration:underline;" onclick=\'
$("#sendit_' . $sas_doc_id . '").toggle("blind",{},"fast");
\'>' . $lang['data_export_tool_66'] . '</a>
</div>
<div id="sendit_' . $sas_doc_id . '" style="display:none;padding:4px 0 4px 6px;">
<div>
• <a href="javascript:;" onclick="popupSendIt(' . $sas_doc_id . ',2);" style="font-size:10px;">' . $lang['data_export_tool_71'] . '</a>
</div>
<div>
• <a href="javascript:;" onclick="popupSendIt(' . $data_wo_hdr_doc_id . ',2);" style="font-size:10px;">' . $lang['data_export_tool_72'] . '</a>
</div>
</div>
</div>
</td>
</tr>';
//R
print '<tr class="even noncsv">
<td valign="top" style="text-align:center;width:60px;padding-top:10px;border:0px;border-left:1px solid #D0D0D0;">
<img src="' . APP_PATH_IMAGES . 'rlogo_small.png" title="' . $lang['data_export_tool_09'] . '" alt="' . $lang['data_export_tool_09'] . '" />
</td>
<td style="font-family:Verdana;font-size:11px;padding:10px;" valign="top">
<b>' . $lang['data_export_tool_09'] . '</b><br />' . $lang['data_export_tool_10'] . '
</td>
<td valign="top" style="text-align:right;width:100px;padding-top:10px;">
<a href="' . APP_PATH_WEBROOT . 'FileRepository/file_download.php?pid=' . $project_id . '&id=' . $r_doc_id . '">
<img src="' . APP_PATH_IMAGES . 'download_r.gif" title="' . $lang['data_export_tool_75'] . '" alt="' . $lang['data_export_tool_75'] . '">
</a>
<a href="' . APP_PATH_WEBROOT . 'FileRepository/file_download.php?pid=' . $project_id . '&id=' . $data_doc_id . '&exporttype=R">
<img src="' . APP_PATH_IMAGES . $csv_img . '" title="' . $lang['data_export_tool_69'] . '" alt="' . $lang['data_export_tool_69'] . '"></a>
<div style="text-align:left;padding:5px 0 1px;' . $sendItLinkDisplay . '">
<div style="line-height:5px;">
<img src="' . APP_PATH_IMAGES . 'mail_small.png" style="position: relative; top: 5px;"><a
href="javascript:;" style="color:#666;font-size:10px;text-decoration:underline;" onclick=\'
$("#sendit_' . $r_doc_id . '").toggle("blind",{},"fast");
\'>' . $lang['data_export_tool_66'] . '</a>
</div>
<div id="sendit_' . $r_doc_id . '" style="display:none;padding:4px 0 4px 6px;">
<div>
• <a href="javascript:;" onclick="popupSendIt(' . $r_doc_id . ',2);" style="font-size:10px;">' . $lang['data_export_tool_71'] . '</a>
</div>
<div>
• <a href="javascript:;" onclick="popupSendIt(' . $data_doc_id . ',2);" style="font-size:10px;">' . $lang['data_export_tool_72'] . '</a>
</div>
</div>
</div>
</td>
</tr>';
//STATA
print '<tr class="odd noncsv">
<td valign="top" style="text-align:center;width:60px;padding-top:10px;border:0px;border-bottom:1px solid #D0D0D0;border-left:1px solid #D0D0D0;">
<img src="' . APP_PATH_IMAGES . 'statalogo_small.png" title="' . $lang['data_export_tool_13'] . '" alt="' . $lang['data_export_tool_13'] . '" />
</td>
<td style="font-family:Verdana;font-size:11px;padding:10px;border-bottom:1px solid #D0D0D0;" valign="top">
<b>' . $lang['data_export_tool_13'] . '</b><br />' . $lang['data_export_tool_14'] . '
</td>
<td valign="top" style="text-align:right;width:100px;padding-top:10px;border-bottom:1px solid #D0D0D0;">
<a href="' . APP_PATH_WEBROOT . 'FileRepository/file_download.php?pid=' . $project_id . '&id=' . $stata_doc_id . '">
<img src="' . APP_PATH_IMAGES . 'download_stata.gif" title="' . $lang['data_export_tool_76'] . '" alt="' . $lang['data_export_tool_76'] . '">
</a>
<a href="' . APP_PATH_WEBROOT . 'FileRepository/file_download.php?pid=' . $project_id . '&id=' . $data_wo_hdr_doc_id . '">
<img src="' . APP_PATH_IMAGES . $csv_img . '" title="' . $lang['data_export_tool_69'] . '" alt="' . $lang['data_export_tool_69'] . '"></a>
<div style="text-align:left;padding:5px 0 1px;' . $sendItLinkDisplay . '">
<div style="line-height:5px;">
<img src="' . APP_PATH_IMAGES . 'mail_small.png" style="position: relative; top: 5px;"><a
href="javascript:;" style="color:#666;font-size:10px;text-decoration:underline;" onclick=\'
$("#sendit_' . $stata_doc_id . '").toggle("blind",{},"fast");
\'>' . $lang['data_export_tool_66'] . '</a>
</div>
<div id="sendit_' . $stata_doc_id . '" style="display:none;padding:4px 0 4px 6px;">
<div>
• <a href="javascript:;" onclick="popupSendIt(' . $stata_doc_id . ',2);" style="font-size:10px;">' . $lang['data_export_tool_71'] . '</a>
</div>
<div>
• <a href="javascript:;" onclick="popupSendIt(' . $data_wo_hdr_doc_id . ',2);" style="font-size:10px;">' . $lang['data_export_tool_72'] . '</a>
</div>
</div>
</div>
</td>
</tr>';
print '</table>';
print '</div><br><br><br><br>';
}
/**
* @param $table_name string
* @param $lang
* @param $app_title string
* @param $userid string
* @param $user_rights
* @param $chkd_fields string
* @param $parent_chkd_flds
* @param $project_id
* @param $export_file_name
* @param $debug
*/
function create_cdisc_download($table_name, $lang, $app_title, $userid, $user_rights, $chkd_fields, $parent_chkd_flds, $project_id, $export_file_name, $debug)
{
$data_row = array();
$table_csv = "";
$export_result = db_query("SELECT * FROM `$table_name`");
if ($export_result) {
while ($export_row = db_fetch_assoc($export_result)) {
foreach ($export_row AS $export_key => $export_value) {
$data_row[strtoupper($export_key)] = fix_null_sas($export_value);
}
$row_csv = implode(',', $data_row) . "\n";
$table_csv .= $row_csv;
}
db_free_result($export_result);
}
/**
* when are we?
*/
//$today = date("Y-m-d_Hi");
/**
* Creates the data comma separated value file WITH header
*/
// File names, comments
$projTitleShort = substr(str_replace(" ", "", ucwords(preg_replace("/[^a-zA-Z0-9 ]/", "", html_entity_decode($app_title, ENT_QUOTES)))), 0, 20);
$data_file_name_WH = $export_file_name . ".csv";
$today = date("Y-m-d-H-i-s");
$docs_comment_WH = "CDISC $export_file_name domain data file created by $userid on $today.";
/**
* setup values for value export logging
*/
$headers = implode(',', array_keys($data_row)) . "\n";
/**
* turn on/off exporting
*/
if ($user_rights['data_export_tool'] && !$debug) {
$table_csv = addBOMtoUTF8($headers . $table_csv);
$docs_size = strlen($table_csv);
$export_sql = "INSERT INTO redcap_docs (project_id,docs_name,docs_file,docs_date,docs_size,docs_comment,docs_type,docs_rights,export_file) " . "VALUES ($project_id, '" . $data_file_name_WH . "', NULL, '" . TODAY . "','$docs_size','" . $docs_comment_WH . "','application/csv', NULL ,0)";
if (!db_query($export_sql)) {
$is_export_error = true;
} else {
/**
* Store the file in the file system
*/
if (!DataExport::storeExportFile($data_file_name_WH, $table_csv, db_insert_id(), $docs_size)) {
$is_export_error = true;
} else {
log_event("", "redcap_data", "data_export", "", str_replace("'", "", $chkd_fields) . (($parent_chkd_flds == "") ? "" : ", " . str_replace("'", "", $parent_chkd_flds)), "Export data");
}
}
unset($table_csv);
$csv_img = "download_csvdata.gif";
$csvexcel_img = "download_csvexcel_raw.gif";
$csvexcellabels_img = "download_csvexcel_labels.gif";
/**
* since we're not allowing download of csv headers only, we're going to reset the message shown in the export dialog
* and reset it later to the original value
*/
$temp_data_export_tool_118 = $lang['data_export_tool_118'];
$lang['data_export_tool_118'] = "You may download the CDISC $table_name data in CSV (comma-separated) format, which can be opened in Excel.";
// Need docs_id from this operation to automatically build link
$docsql = "SELECT docs_id FROM redcap_docs WHERE project_id = $project_id ORDER BY docs_id DESC LIMIT 1";
$new_id = db_result(db_query($docsql), 0) - 1;
/**
* print table header
*/
print "<h1>Export Data</h1>";
print "<div style='max-width:700px;'>";
print "<table style='border: 1px solid #DODODO; border-collapse: collapse; width: 100%'>
<tr class='grp2'>
<td colspan='2' style='font-family:Verdana;font-size:12px;text-align:left;'>
<!--<a href='javascript:void(0)' onclick='window.print();' title='Print this page'>Print Report</a>--></td>
<td style='font-family:Verdana;font-size:12px;text-align:center;'>
{$lang['docs_58']}<br>{$lang['data_export_tool_51']}
</td>
</tr>";
/**
* print csv export selection
*/
print '<tr class="odd">
<td valign="top" style="text-align:center;width:60px;padding-top:10px;border:0px;border-left:1px solid #D0D0D0;">
<img src="' . APP_PATH_IMAGES . 'excelicon.gif" title="' . $lang['data_export_tool_15'] . '" alt="' . $lang['data_export_tool_15'] . '" />
</td>
<td style="font-family:Verdana;font-size:11px;padding:10px;" valign="top">
<b>' . $lang['data_export_tool_15'] . '</b><br>
' . $lang['data_export_tool_118'] . '<br><br>
<i>' . $lang['global_02'] . ': ' . $lang['data_export_tool_17'] . '</i>
</td>
<td valign="top" style="text-align:center;width:100px;padding-top:10px;">
<a href="' . APP_PATH_WEBROOT . 'FileRepository/file_download.php?pid=' . $project_id . '&id=' . ($new_id + 1) . '">
<img src="' . APP_PATH_IMAGES . $csvexcellabels_img . '" title="' . $lang['data_export_tool_60'] . '" alt="' . $lang['data_export_tool_60'] . '"></a>
<div style="text-align:left;padding:5px 0 1px;">
<div style="line-height:5px;">
<img src="' . APP_PATH_IMAGES . 'mail_small.png" style="position: relative; top: 5px;"><a
href="javascript:;" style="color:#666;font-size:10px;text-decoration:underline;"
onclick=\'$("#sendit_' . ($new_id - 1) . '").toggle("blind",{},"fast");\'>' . $lang['data_export_tool_66'] . '</a>
</div>
<div id="sendit_' . ($new_id - 1) . '" style="display:none;padding:4px 0 4px 6px;">
<div>
• <a href="javascript:;" onclick="popupSendIt(' . ($new_id + 1) . ',2);" style="font-size:10px;">' . $lang['data_export_tool_120'] . '</a>
</div>
<div>
• <a href="javascript:;" onclick="popupSendIt(' . ($new_id - 1) . ',2);" style="font-size:10px;">' . $lang['data_export_tool_119'] . '</a>
</div>
</div>
</div>
</td>
</tr>';
/**
* print table footer
*/
print '</table>';
print '</div>';
$lang['data_export_tool_118'] = $temp_data_export_tool_118;
}
}
