/**
* {@inheritDoc}
*/
public function load(ObjectManager $vm)
{
$vm = $this->container->get('vib.doctrine.registry')->getManagerForClass('VIB\\FliesBundle\\Entity\\StockVial');
$vm->disableAutoAcl();
$user = $this->getReference('user');
$vial_1 = new StockVial();
$vial_1->setStock($this->getReference('stock_4'));
$vm->persist($vial_1);
$vm->flush();
$vm->createACL($vial_1, $user);
$this->addReference('vial_1', $vial_1);
$vial_2 = new StockVial();
$vial_2->setStock($this->getReference('stock_1'));
$vial_2->getSetupDate()->sub(new \DateInterval('P3M'));
$vm->persist($vial_2);
$vm->flush();
$vm->createACL($vial_2, $user);
$vial_3 = new StockVial();
$vial_3->setStock($this->getReference('stock_1'));
$vial_3->setTrashed(true);
$vm->persist($vial_3);
$vm->flush();
$vm->createACL($vial_3, $user);
$vm->enableAutoAcl();
}
public function crossParentNameProvider()
{
$stock = new Stock();
$stock->setGenotype('test genotype');
$stock->setName('test stock');
$stockVial = new StockVial();
$stockVial->setStock($stock);
$injection = new InjectionVial();
$injection->setTargetStock($stock);
$injection->setConstructName('test');
return array(array(new FakeCrossVial(), null, 'test'), array(new FakeCrossVial(), $stockVial, 'test parent'), array(new FakeCrossVial(), $injection, 'test parent'), array(new FakeCrossVial(), new CrossVial(), 'test'));
}
/**
* Set target stock
*
* @param \VIB\FliesBundle\Entity\StockVial $targetStockVial
*/
public function setTargetStockVial(StockVial $targetStockVial = null)
{
$this->targetStockVial = $targetStockVial;
if (null !== $targetStockVial) {
$this->setTargetStock($targetStockVial->getStock());
}
}
protected function execute(InputInterface $input, OutputInterface $output)
{
$listfilename = $input->getArgument('listfile');
$stocks = array();
if ($listfilename) {
$listfile = fopen($listfilename, 'r');
if ($listfile) {
while ($data = fgetcsv($listfile, 0, "\t")) {
$stocks[] = $data[0];
}
}
}
natsort($stocks);
$dialog = $this->getHelperSet()->get('dialog');
$this->container = $this->getApplication()->getKernel()->getContainer();
$user = $this->container->get('user_provider')->loadUserByUsername($input->getArgument('owner'));
$om = $this->container->get('vib.doctrine.registry')->getManagerForClass('VIB\\CoreBundle\\Entity\\Entity');
$vm = $this->container->get('vib.doctrine.registry')->getManagerForClass('VIB\\FliesBundle\\Entity\\Vial');
$om->disableAutoAcl();
$vm->disableAutoAcl();
$om->getConnection()->beginTransaction();
$vials = new ArrayCollection();
foreach ($stocks as $stockname) {
try {
$stock = $om->getRepository('VIB\\FliesBundle\\Entity\\Stock')->createQueryBuilder('b')->where('b.name = :name')->setParameter('name', $stockname)->getQuery()->getSingleResult();
} catch (\Exception $e) {
echo "{$stockname} not found!\n";
$stock = null;
}
if (null !== $stock) {
echo $stock->getName() . "\n";
$vial = new StockVial();
$vial->setStock($stock);
$vials[] = $vial;
$vm->persist($vial);
}
}
$output->writeln("Objects imported. Flushing DB buffer.");
$om->flush();
$output->writeln("Creating ACLs.");
$vm->createACL($vials, $user);
$message = 'Everything seems to be OK. Commit?';
if ($dialog->askConfirmation($output, '<question>' . $message . '</question>', true)) {
$om->getConnection()->commit();
if ($input->getOption('print')) {
echo "Will print labels now.\n";
$pdf = $this->container->get('vibfolks.pdflabel');
foreach ($vials as $vial) {
$pdf->addLabel($vial);
$vm->markPrinted($vial);
}
$vm->flush();
$jobStatus = $pdf->printPDF();
echo $jobStatus . "\n";
}
} else {
$om->getConnection()->rollback();
$om->close();
}
$om->enableAutoAcl();
$vm->enableAutoAcl();
}
/**
* @dataProvider vialProvider
*/
public function testTargetStockVial($vial)
{
$this->assertInstanceOf('VIB\\FliesBundle\\Entity\\StockVial', $vial->getTargetStockVial());
$vial->setTargetStockVial(null);
$this->assertNull($vial->getTargetStockVial());
$this->assertNull($vial->getTargetStock());
$stock = new Stock();
$stockVial = new StockVial();
$stockVial->setStock($stock);
$vial->setTargetStockVial($stockVial);
$this->assertEquals($stock, $vial->getTargetStock());
$this->assertEquals($stockVial, $vial->getTargetStockVial());
}
public function __construct(Vial $template = null, $flip = true)
{
parent::__construct($template, $flip);
$this->id = 1;
$this->stock = new Stock();
$this->stock->setName('Test');
$this->stock->setGenotype('test');
}